LOC118936499 (LOC106578510)


Basic Information

Item Value
gene id LOC118936499
gene name LOC106578510
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 23590839 ~ 23594014 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036935211.1
CCATTATTCTGGTTCTTTGGGAGAACAACAAGGGTTCCTGGGTATTAAGCCTAATGCTTGACTCTTGAGTTTGCAGTGTACTTGGATTATCATTCTCACCGTCAGCCTTACACTAACAGCAATGGGGTGATGGATAATGTCTAATAATCTGTGTCTATGTTCTTTATATCTATGGGGCATGGCTTCATTCCAATGAAATGGAGGATATTAATTGAATATGCAGGTAGTGATTTGTGTTAAAGTCGTTTTTTTTCCCACCAAGAGGTTACTGTGAAATGACTGTGTGGGTGTGCGGCGTTTGGCAAAGGTCTGCTTTCAGAGGAAAAGGTGATGTGAAATGGAAGGCAATTATATTGATGGAGGGCAGAAGGTGCCACTGTTCTAGTTGCATGTTTTCTGATTCCTTGGATATGGTGTCTAATCACTAAGCGGAAACAAACCTCGCGACGTTTGGAAATCATCACTAATTACTAACATCCTTTCTTTTTCACCTGGCCTGTTGTGATTTTCACATCATCCTTTCAGTCGGTTTTGATTGTGAACACCTGTATCTCCACACAGGAGTTAAATGCCGAGTACCAGGCAGACCCGATACAATACATTTACGGACCGATTCCAAATATGCCAGATTTCCAGATGCAAAGGTCCATCACACCTACCAGTAGACCACTGAGGAAAATACAAAATCCACAGGAAGGACTTGATGGCGAAGAACCAAAGCAGGcTATGTTCGCCATGGAGATCAGTGTAGAGAAGGACATAAGAACAGGAGAGAGCCAAGTCGTGTCCATGACCACCCTAACCCCTGAAGAGTTCCAACAGAAGGGTGTGAAGGTCTACGATGATGGGAAGAAGTCTGTCTATGCCCTACGCTCGGAGGGACAGGTGACCCAGAATGGGGTGGGGGTGGGCGAACTGAGTAACGTTGAGGTAGAGGCGCTCCTGCGTCAGGCTGGGGATGCAAAGGTCCCCACCGAGGTCCAGTACCACAGGCCCGTCTACGCTGCTCCTTACACCAGCAGGCCTTCAACCCCTGCATGGAAGCCTGAGCAGGGACACGTCAGCCCCAGTCCTGGTGAGCCCAATGGCCATCGGACATCCATTACAACCCGCCATCCTCAAGCCAGCCCTTTCCAGATGCTTCCAGAAGCTCTGCCCAGAGATGGAGCCCAGAGCAGGGAAGAAGTAGCCAGCTCTGCCCCCACTCACATTCCAAACATCCACGCCGACAAGCATCTAGTGCAGCCTCAATCACCCCCCCATCAAGGTTTCAAAACTGGCCAGAGCCTCACCAATGGTAGCAGTGGAAAAGGCCCACACCCAGATAAAAACAGACCAGCTATCATCGCAGTCCTGAGTTCAGGAGAAAGCCGCACTCCCATACCGCTGATAGAGAATACTGTGACAGATTGGGACAGGCAGTCTCCATTCTACCCCAGCAGTCGACAGTCACCATTTTACACCAGTGACAGTGGTGAGTCCTCCTTCAACATCATGAACACCTTGCCACCTGATCTGGACTCTGAACCAGTGACAATGATCTTCATGGGCTACCAGAACGCagcagaggaggaagatgaggagaatATCCAGGCCGAGCTGGTCGTCATCGGAAAcggcgatgatgatgatgaagaagatGACAACAACGTACCCTCATACCACCCCGAGGGATACCGAAGCAAGATCTTCCAACCCACAGCTAtatgcaacaacaacacagactaTATTGCAGATTCCACAAACTCTGAGAGTCTGCTACACCGACCCACGTTCACCCACAAACCTGGCAAGCGCAGTTCTGACCCAGACCAACAGCCCCTGGCCATGGAAGTGCCCATGAGCGCAGGTATCAAGACGGGCAAAAAAAATTGCTGCTGCTTAGGGGGCTGGGGCTCTTCAATCCCTCTCATCAAATGCTAACCTAGCCTCTCATCTACTCTAACAGCCTAACACTCTCTCTCACGCGAACACTGTGGCATCTGCGCCAACCTACCCACAGCCCAAGCATGTACAGCATTCTCTAACCCGTGGTCCCTACGTTCACCCTCTTTTGTCTTCCTTTAACAAGATAATAAGGCACAGTTTTAGAGCGGTTACCACACCTGGCATTACTTTATGTGGCCTTATTTGAACTATAGTCAGCTTTGACAACTGAATGAAAGCTTTTAACTGTTTTGAACGGAAACAATATCGGAGAGATGTTGTCATGTAAATCAGTGTATTactaacttgttttttttttaagactTTAGCTCCATCCAGTGGCCGTACTGCTGAACACATCAACATTTGCTTGGTCATGTTCTGGGTACAGGTGTACTGAATGCCAAAGATGATGCTGCTGCTTGTAAGGAAAGGCATTACATTTCTCGAATGAGATGTTTATTTGATTTTATATAAGATTAAGTGCTTGGTCATTTCTAATGTATGTGTGTGCTATCTAACTTAACTGTTCTGCATAATGTCTGCTCTTGAATCTAAAATAATTAAAACTCATTTGTCATACTA

Function

NR:

description
PREDICTED: palmdelphin-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036935211.1 True 2511 mRNA 0.47 3 23590839 23594014

Neighbor

gene id symbol gene type direction distance location
LOC110535500 LOC106578508 coding upstream 59485 23494909 ~ 23531354 (+)
LOC118937334 NA coding upstream 113689 23475135 ~ 23477150 (+)
LOC110535498 NA coding upstream 203546 23381529 ~ 23387901 (+)
snx7 snx7 coding upstream 224840 23329750 ~ 23365999 (+)
ptbp2a ptbp2 coding upstream 624036 22951161 ~ 22966803 (+)
LOC110535501 LOC106578509 coding downstream 41885 23635899 ~ 23661525 (+)
LOC110535505 LOC106578511 coding downstream 72708 23666722 ~ 23675483 (+)
eif1b LOC106578512 coding downstream 81570 23675584 ~ 23678294 (+)
itprid1 LOC106578515 coding downstream 129199 23723213 ~ 23747923 (+)
ppp1r17 ppp1r17 coding downstream 169014 23763028 ~ 23765913 (+)
G956682 NA non-coding upstream 46111 23544494 ~ 23544728 (+)
G956657 NA non-coding upstream 97393 23493072 ~ 23493446 (+)
G956597 NA non-coding upstream 174550 23412325 ~ 23416289 (+)
G956569 NA non-coding upstream 220276 23370317 ~ 23370563 (+)
G956732 NA non-coding downstream 84066 23678080 ~ 23681424 (+)
G956739 NA non-coding downstream 94261 23688275 ~ 23688480 (+)
G956744 NA non-coding downstream 103765 23697779 ~ 23698068 (+)
G956771 NA non-coding downstream 133083 23727097 ~ 23727416 (+)
G956772 NA non-coding downstream 134316 23728330 ~ 23728626 (+)
tlcd4a LOC106570700 other upstream 849592 22712577 ~ 22741263 (+)
phldb2b tcpe other upstream 3821486 19740565 ~ 19799150 (+)
G951511 NA other upstream 4463754 19126665 ~ 19127085 (+)
G948710 NA other upstream 6988947 16554200 ~ 16601892 (+)
LOC110535387 LOC106579475 other upstream 7045550 16543682 ~ 16565783 (+)
G956728 LOC106613263 other downstream 71274 23665288 ~ 23665930 (+)
G956797 NA other downstream 181758 23775772 ~ 23776845 (+)
G957942 NA other downstream 1006457 24600471 ~ 24601653 (+)
G958300 idi1 other downstream 1200586 24794600 ~ 24795736 (+)
G960696 LOC106583976 other downstream 3119611 26713625 ~ 26797294 (+)

Expression


Co-expression Network