LOC110535505 (LOC106578511)


Basic Information

Item Value
gene id LOC110535505
gene name LOC106578511
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 23666722 ~ 23675483 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620541.2
aatctaccgcacctgattctaataatgaCCTGGTTGATCagatgaatcaggttagttacaactggggttggagtgaaaacctacagaagGGTAACTTTCCAGGGACAGGGTTGGAGACTCCCtgtgtagtgtgtctgtctgAAAGATGGATCGATACATATTGATCATTGCGTGTGTTCTGCGGGTCGTGCGGTGCTACAGCTCCGGAGAGGTGACTGAGGCGTGTGACGATATGGCACCGCAACACTTCGTAACCGCACAGCAGAGCCCTGCGCCATTCTCTGTCACCGCTGACCGGTCCAGCTTCAAGGAGGGCGATGAAATCACAGTCCGGCTCCTGGCAGATTCCACTCCATTCATTGGGTTCATGTTACAAGCCAGAGCAGTTAATGGAAGCAGTCCTCTGGGAGTCTTCACTGTAACAGGTGGAGAGGCCCAGCTCCTCACCTGCAACGGACAACCTAAGTCTGCAGTTTCTCACACATCAGCATCAGCTAAATTATCCATCCAGGGAACATGGAGGGCCCCCACATCAGATGGCCTTAACTCTATCCAATTCAGTGCATCCTTTGTAATAGATTTCTCCATCTTCTGGGTTGGCGTGACAAGTTATCCAGTCACGTTCAGTGGCACTACTGCAACACCAGCTAACAGCACATCCATACCCATCACCTCGACCACCTCCGCCTCATCTACAGCAGTATTTCCATCCCAATCCTCATTGTCCATCTCGAGTGCTGGATGTGGCAGCAGTAAGGTCTGTTTCAGGCAACCTCTGAACTGTGACCCTGGGGTCAGCCCAGACTGTTACTTCCTATCTGCTATGACCTCTACCAGGGATACAGCCATCCATTTGGAAATGACTGGCCCTTCAGATGGCTACATCGCCATCGGCTTCTCAGATGACCAGATGATGGGAAATGATGATATCTTTATTTGTGGCCGGGACAGTAACGGGTTCATCCAATTGCAACATGCCTATTCAACAGGAAGAAGGCGGCCGGACATAGTTCCTCTGGGAAATGTTTCTGATGTTAAATCCTCAATGCAGGATGATATCATTAGCTGTTCCTTCACGACTAGGAGCCCCATCTCAATTCCGCGATCGGTACGGTCCAGTTCCCCCTACTACCTCATGTTTGCTCACGGACCAACCAGTAATGGGGAAATTGGGCATCATACAAGCACCTTCCTCAGTGACACTAAGATGGATATTTCAAGACCTCGGGGCATCACCAATGCAATCCAGCCTCCTATTATCAAAGCACATGGTGCCCTGATGTTGATAGCATGGATGACCACAGGTAGTCTAGGAATGATCACAGCCAGGTATCTCAAAGGTGTGGCCAATGGGAAGGAATGTTGGCACGATGTTTGGTTTCTGGTACACGTGTTTCTTATGACACtaactgttgctgccaccatcatTGCCTTCATCTTGTCCTTCTCACATGTTAGAGGCTGGAGTGGGGGAGCCCATCCTGTGTTGGGCTGCGTCATGATGATTCTGGCCTTCTTCCAGCCGATCGTTGCCATGTTCCGATGTGGACCTCACCATCGCTGGCGATTCCTCTTTAATTGGTCGCATGCTTTAAATGCAGTGGCGATAAAAGTTTTAGCTGTGGTGGCCATATTCACTGGGTTGTCGTTGATTGACAGCTCTGAGGATAAGTGGCTTCTGAAGGTGATGGGTGGTTTTGTTGGATGGGAGGCAACACTGTACATCCTGCTAGATGTTCACATGCGCTGCAAGTGCAGTGATAACGAAGAGGGTGCTTCTGAATCGGCATGCAAGGCTTTGTTACTACTGGTCCTGTTTTTCCTAGGAAATATGGCCTTTTTGGGAGCACTACTTGTTGGAATTGCCATGTCATGAAGAGCTGCTGAGCAATGGACAGATGCGCTGTCATGATATTTCTATAATATAGCTCACTTTGACTGTATATTTGAAATTTTATAACGTTATGCTCAGAATCATACCGAAAATAGTTGTGATACCTTGTTTACACTGGATGATAAAACGGTATTTTAAATTGACTTCACCCATAATGTTTAAATTGCATGTATATCATTATTAATACTGTAAGTGACTTATAATAAAGTAATTGTTCAAAATGTGTAATAAACAATTGTGCAAACTA
>XM_021620542.2
aatctaccgcacctgattctaataatgaCCTGGTTGATCagatgaatcaggttagttacaactggggttggagtgaaaacctacagaagGGTAACTTTCCAGGGACAGGGTTGGAGACTCCCtgtgtagtgtgtctgtctgAAAGATGGATCGATACATATTGATCATTGCGTGTGTTCTGCGGGTCGTGCGGTGCTACAGCTCCGGAGAGGTGACTGAGGCGTGTGACGATATGGCACCGCAACACTTCGTAACCGCACAGCAGAGCCCTGCGCCATTCTCTGTCACCGCTGACCGGTCCAGCTTCAAGGAGGGCGATGAAATCACAGTCCGGCTCCTGGCAGATTCCACTCCATTCATTGGGTTCATGTTACAAGCCAGAGCAGTTAATGGAAGCAGTCCTCTGGGAGTCTTCACTGTAACAGGTGGAGAGGCCCAGCTCCTCACCTGCAACGGACAACCTTCTGCAGTTTCTCACACATCAGCATCAGCTAAATTATCCATCCAGGGAACATGGAGGGCCCCCACATCAGATGGCCTTAACTCTATCCAATTCAGTGCATCCTTTGTAATAGATTTCTCCATCTTCTGGGTTGGCGTGACAAGTTATCCAGTCACGTTCAGTGGCACTACTGCAACACCAGCTAACAGCACATCCATACCCATCACCTCGACCACCTCCGCCTCATCTACAGCAGTATTTCCATCCCAATCCTCATTGTCCATCTCGAGTGCTGGATGTGGCAGCAGTAAGGTCTGTTTCAGGCAACCTCTGAACTGTGACCCTGGGGTCAGCCCAGACTGTTACTTCCTATCTGCTATGACCTCTACCAGGGATACAGCCATCCATTTGGAAATGACTGGCCCTTCAGATGGCTACATCGCCATCGGCTTCTCAGATGACCAGATGATGGGAAATGATGATATCTTTATTTGTGGCCGGGACAGTAACGGGTTCATCCAATTGCAACATGCCTATTCAACAGGAAGAAGGCGGCCGGACATAGTTCCTCTGGGAAATGTTTCTGATGTTAAATCCTCAATGCAGGATGATATCATTAGCTGTTCCTTCACGACTAGGAGCCCCATCTCAATTCCGCGATCGGTACGGTCCAGTTCCCCCTACTACCTCATGTTTGCTCACGGACCAACCAGTAATGGGGAAATTGGGCATCATACAAGCACCTTCCTCAGTGACACTAAGATGGATATTTCAAGACCTCGGGGCATCACCAATGCAATCCAGCCTCCTATTATCAAAGCACATGGTGCCCTGATGTTGATAGCATGGATGACCACAGGTAGTCTAGGAATGATCACAGCCAGGTATCTCAAAGGTGTGGCCAATGGGAAGGAATGTTGGCACGATGTTTGGTTTCTGGTACACGTGTTTCTTATGACACtaactgttgctgccaccatcatTGCCTTCATCTTGTCCTTCTCACATGTTAGAGGCTGGAGTGGGGGAGCCCATCCTGTGTTGGGCTGCGTCATGATGATTCTGGCCTTCTTCCAGCCGATCGTTGCCATGTTCCGATGTGGACCTCACCATCGCTGGCGATTCCTCTTTAATTGGTCGCATGCTTTAAATGCAGTGGCGATAAAAGTTTTAGCTGTGGTGGCCATATTCACTGGGTTGTCGTTGATTGACAGCTCTGAGGATAAGTGGCTTCTGAAGGTGATGGGTGGTTTTGTTGGATGGGAGGCAACACTGTACATCCTGCTAGATGTTCACATGCGCTGCAAGTGCAGTGATAACGAAGAGGGTGCTTCTGAATCGGCATGCAAGGCTTTGTTACTACTGGTCCTGTTTTTCCTAGGAAATATGGCCTTTTTGGGAGCACTACTTGTTGGAATTGCCATGTCATGAAGAGCTGCTGAGCAATGGACAGATGCGCTGTCATGATATTTCTATAATATAGCTCACTTTGACTGTATATTTGAAATTTTATAACGTTATGCTCAGAATCATACCGAAAATAGTTGTGATACCTTGTTTACACTGGATGATAAAACGGTATTTTAAATTGACTTCACCCATAATGTTTAAATTGCATGTATATCATTATTAATACTGTAAGTGACTTATAATAAAGTAATTGTTCAAAATGTGTAATAAACAATTGTGCAAACTA
>XM_021620543.2
CATAATTCATGTCCTTATACCCAGATGTATAGTAGCAACTGTTGTCTTCTATAagatgtagtgtttatgtagaaAATAAATAGTAATGACACGAACTGTTCTGAGCCAGAACTAGCTGTATTTTTGTGTTGTAAAAACACTTTGGTCTCACAGGGTTAAGTGCTTAAGGCAACCGCCGTACTTGTCACACTAGTATCCAGAAGGGaggtcctctctctgtcttaacGTTAACCTCACACAAGGCACTAAACTAGAAATTCTGCCCTCACCCAAACTCCCTAACTTGTCGACTCAGCTCCGGAGAGGTGACTGAGGCGTGTGACGATATGGCACCGCAACACTTCGTAACCGCACAGCAGAGCCCTGCGCCATTCTCTGTCACCGCTGACCGGTCCAGCTTCAAGGAGGGCGATGAAATCACAGTCCGGCTCCTGGCAGATTCCACTCCATTCATTGGGTTCATGTTACAAGCCAGAGCAGTTAATGGAAGCAGTCCTCTGGGAGTCTTCACTGTAACAGGTGGAGAGGCCCAGCTCCTCACCTGCAACGGACAACCTAAGTCTGCAGTTTCTCACACATCAGCATCAGCTAAATTATCCATCCAGGGAACATGGAGGGCCCCCACATCAGATGGCCTTAACTCTATCCAATTCAGTGCATCCTTTGTAATAGATTTCTCCATCTTCTGGGTTGGCGTGACAAGTTATCCAGTCACGTTCAGTGGCACTACTGCAACACCAGCTAACAGCACATCCATACCCATCACCTCGACCACCTCCGCCTCATCTACAGCAGTATTTCCATCCCAATCCTCATTGTCCATCTCGAGTGCTGGATGTGGCAGCAGTAAGGTCTGTTTCAGGCAACCTCTGAACTGTGACCCTGGGGTCAGCCCAGACTGTTACTTCCTATCTGCTATGACCTCTACCAGGGATACAGCCATCCATTTGGAAATGACTGGCCCTTCAGATGGCTACATCGCCATCGGCTTCTCAGATGACCAGATGATGGGAAATGATGATATCTTTATTTGTGGCCGGGACAGTAACGGGTTCATCCAATTGCAACATGCCTATTCAACAGGAAGAAGGCGGCCGGACATAGTTCCTCTGGGAAATGTTTCTGATGTTAAATCCTCAATGCAGGATGATATCATTAGCTGTTCCTTCACGACTAGGAGCCCCATCTCAATTCCGCGATCGGTACGGTCCAGTTCCCCCTACTACCTCATGTTTGCTCACGGACCAACCAGTAATGGGGAAATTGGGCATCATACAAGCACCTTCCTCAGTGACACTAAGATGGATATTTCAAGACCTCGGGGCATCACCAATGCAATCCAGCCTCCTATTATCAAAGCACATGGTGCCCTGATGTTGATAGCATGGATGACCACAGGTAGTCTAGGAATGATCACAGCCAGGTATCTCAAAGGTGTGGCCAATGGGAAGGAATGTTGGCACGATGTTTGGTTTCTGGTACACGTGTTTCTTATGACACtaactgttgctgccaccatcatTGCCTTCATCTTGTCCTTCTCACATGTTAGAGGCTGGAGTGGGGGAGCCCATCCTGTGTTGGGCTGCGTCATGATGATTCTGGCCTTCTTCCAGCCGATCGTTGCCATGTTCCGATGTGGACCTCACCATCGCTGGCGATTCCTCTTTAATTGGTCGCATGCTTTAAATGCAGTGGCGATAAAAGTTTTAGCTGTGGTGGCCATATTCACTGGGTTGTCGTTGATTGACAGCTCTGAGGATAAGTGGCTTCTGAAGGTGATGGGTGGTTTTGTTGGATGGGAGGCAACACTGTACATCCTGCTAGATGTTCACATGCGCTGCAAGTGCAGTGATAACGAAGAGGGTGCTTCTGAATCGGCATGCAAGGCTTTGTTACTACTGGTCCTGTTTTTCCTAGGAAATATGGCCTTTTTGGGAGCACTACTTGTTGGAATTGCCATGTCATGAAGAGCTGCTGAGCAATGGACAGATGCGCTGTCATGATATTTCTATAATATAGCTCACTTTGACTGTATATTTGAAATTTTATAACGTTATGCTCAGAATCATACCGAAAATAGTTGTGATACCTTGTTTACACTGGATGATAAAACGGTATTTTAAATTGACTTCACCCATAATGTTTAAATTGCATGTATATCATTATTAATACTGTAAGTGACTTATAATAAAGTAATTGTTCAAAATGTGTAATAAACAATTGTGCAAACTA

Function

NR:

description
putative ferric-chelate reductase 1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620541.2 False 2141 mRNA 0.47 16 23666722 23675483
XM_021620542.2 False 2138 mRNA 0.47 16 23666722 23675483
XM_021620543.2 True 2235 mRNA 0.46 16 23666954 23675483

Neighbor

gene id symbol gene type direction distance location
LOC110535501 LOC106578509 coding upstream 5197 23635899 ~ 23661525 (+)
palmdb LOC106578510 coding upstream 61805 23563675 ~ 23604917 (+)
LOC118936499 LOC106578510 coding upstream 72708 23590839 ~ 23594014 (+)
LOC110535500 LOC106578508 coding upstream 135368 23494909 ~ 23531354 (+)
LOC118937334 NA coding upstream 189572 23475135 ~ 23477150 (+)
eif1b LOC106578512 coding downstream 101 23675584 ~ 23678294 (+)
itprid1 LOC106578515 coding downstream 47730 23723213 ~ 23747923 (+)
ppp1r17 ppp1r17 coding downstream 87545 23763028 ~ 23765913 (+)
trdmt1 trdmt1 coding downstream 301865 23977348 ~ 23996262 (+)
cubn cubn coding downstream 321105 23996588 ~ 24049588 (+)
G956682 NA non-coding upstream 121994 23544494 ~ 23544728 (+)
G956657 NA non-coding upstream 173276 23493072 ~ 23493446 (+)
G956597 NA non-coding upstream 250433 23412325 ~ 23416289 (+)
LOC110535498 NA non-coding upstream 278821 23381529 ~ 23387901 (+)
G956569 NA non-coding upstream 296159 23370317 ~ 23370563 (+)
G956732 NA non-coding downstream 2597 23678080 ~ 23681424 (+)
G956739 NA non-coding downstream 12792 23688275 ~ 23688480 (+)
G956744 NA non-coding downstream 22296 23697779 ~ 23698068 (+)
G956771 NA non-coding downstream 51614 23727097 ~ 23727416 (+)
G956772 NA non-coding downstream 52847 23728330 ~ 23728626 (+)
G956728 LOC106613263 other upstream 792 23665288 ~ 23665930 (+)
tlcd4a LOC106570700 other upstream 925475 22712577 ~ 22741263 (+)
phldb2b tcpe other upstream 3897369 19740565 ~ 19799150 (+)
G951511 NA other upstream 4539637 19126665 ~ 19127085 (+)
G948710 NA other upstream 7064830 16554200 ~ 16601892 (+)
G956797 NA other downstream 100289 23775772 ~ 23776845 (+)
G957942 NA other downstream 924988 24600471 ~ 24601653 (+)
G958300 idi1 other downstream 1119117 24794600 ~ 24795736 (+)
G960696 LOC106583976 other downstream 3038142 26713625 ~ 26797294 (+)
G960816 armc4 other downstream 3253193 26928676 ~ 26929027 (+)

Expression


Co-expression Network