ppp1r17 (ppp1r17)


Basic Information

Item Value
gene id ppp1r17
gene name ppp1r17
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 23763028 ~ 23765913 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620553.2
GACAACGGGCGCTAATGGAGACGGTGGACTGGGCGGATGGGTGGTGATGATGCTCCTCCTCCGAGCTACTTAACACCATGGCTTTGATCTGGCCCGGCACTCACTCCTTCTGTCCTGTCTGCTCACTGCACAGCTGAGACTGAGACTGGGCTGTGTTATCTGATCTGGGTCCAGACTGGGAGAAAAAGgataagagagagaagaggaggagaagatgtcTACAGGCTGTGGCTGTGTGAGGTCGCCCCCGGAGACAGCGGAACACAGACTGACGGGTGGACAGGAGCACCACTATCAGATGGTGGAGCCTGTGAGGACCCTGCTAGAGGAGGGGGCAGGGATGACCAGAGCTGTGCAGGGGAAACACTGTCCTGAGGCAGTGCACCCCGAGGAGCAGCCAGATGAGCAGGAACTGAAGAAACCACGCAGGAAAGACACGCCCGTCCTCAACACTCCTCCACTCATACCAGTCACTTGCCTTCATCAGGTGTGAGGATggtgaaaggagagaagagaatgaTTCACATGGAGGATGAAGAGAAGGATGGAAAGAACTAGAAGTCATTGGAGGAGAGATTCTTGCCtacaatttttgttgttgttgacatcgTTGTTTCCTGTTGTCACATTACTAATATGTAGCTTATACATGTTTATTAAAAGTAGCTCTACAATGTGTGGCTGTTATCTTTCATAAACAAGGTATAAAGATGTTGTCAATGCATGCATTCAATGTAATATACTGTCTCTAGCCAAAGGTTGCACCGTGGCcattacaatgtaaaaaatagcaTATGTCTTATGGAAGATGCCAAAACGTTGGAGAAAACAATAGAATGAAAAGTCAAAGTTACTGGTTTCCATCTGTGGCAAAGTTTTCCCTAAATGGTTATGTCAAATCCAGCTCCAGAACCAGCCTAGCCAGCTGGCTATTCTTTTGAATATGGTGTAGTTAGAAAAAAACCCAGCAACAACAGATGATGCTAGCtaaggttagcatgctagctatctacactgacagctgtcagttCCCTATTTCTTGATGTTTCTCCAGTCCACGTCGAAATCACCATGACGTTCTTTCCCACCCCCAATTCTAAAACATGTATAAGTAGCCTGCCTCATTCATCAGAGGTGCAACCTAAACAAGCATTCTTGCTCtagggcagagaggaagaggcaaagcgagaggtTTTAATCTGCCCAAATCTGTTTGTGTAAATAAGTCCACGAACTGAATAACTTTTGTATGGAAGTCAATAAGAGTATCAAATTTGGACAACAATAAATGTCATCGCTAATTTGCTACAAGAGGCTTACTTGATTTAATAGAAGTTTCataatggttaggttgttacgaATGCACTGATGTAAGTGGACGCATGTGGGATTTAGGCCACTTTGAAAAAAATGTGTTAATATCAGAGTTGTGCTTGTTGtcatagagatacagtatatagaggACTCATTATGGATCTAGccgttttagcatggacattTCCATTGAGGACTTCCACAATTTTAAAATAGTCAACTGGGTCGCTATTCCGAGCCAGAGAaatcagccaatgaagaagaaaatgtactactttaaAATAGAGAgagcctcaatggtgctgcccatgctgtcCCAGATGCTATAAAGGCACAGATGCAAAGACGAGTCCTCTACGGCCTATTGTTCATGCGCTTATCTGTCCTCTCATGGGCTAGAATGGTCCCATctgatctctcctcctcccatgtGTTTCATCTTTGACatatatttccattgttagagcgatcacttgactatcttgtcaatataatagacaatATCTAGGGCAGGAATTACAT
>XM_021620551.2
CAACGGGCGCTAATGGAGACGGTGGACTGGGCGGATGGGTGGTGATGATGCTCCTCCTCCGAGCTACTTAACACCATGGCTTTGATCTGGCCCGGCACTCACTCCTTCTGTCCTGTCTGCTCACTGCACAGCTGAGACTGAGACTGGGCTGTGTTATCTGATCTGGGTCCAGACTGGGAGAAAAAGgataagagagagaagaggaggagaagatgtcTACAGGCTGTGGCTGTGTGAGGTCGCCCCCGGAGACAGCGGAACACAGACTGACGGGTGGACAGGAGCACCACTATCAGATGGTGGAGCCTGTGAGGACCCTGCTAGAGGAGGGGGCAGGGATGACCAGAGCTGTGCAGGGGAAACACTGTCCTGAGGCAGTGCACCCCGAGGAGCAGCCAGATGAGCAGGAACTGAAGAAACCACGCAGGAAAGACACGCCCGTCCTCAACACTCCTCCACTCATACCAGGTGTGAGGATggtgaaaggagagaagagaatgaTTCACATGGAGGATGAAGAGAAGGATGGAAAGAACTAGAAGTCATTGGAGGAGAGATTCTTGCCtacaatttttgttgttgttgacatcgTTGTTTCCTGTTGTCACATTACTAATATGTAGCTTATACATGTTTATTAAAAGTAGCTCTACAATGTGTGGCTGTTATCTTTCATAAACAAGGTATAAAGATGTTGTCAATGCATGCATTCAATGTAATATACTGTCTCTAGCCAAAGGTTGCACCGTGGCcattacaatgtaaaaaatagcaTATGTCTTATGGAAGATGCCAAAACGTTGGAGAAAACAATAGAATGAAAAGTCAAAGTTACTGGTTTCCATCTGTGGCAAAGTTTTCCCTAAATGGTTATGTCAAATCCAGCTCCAGAACCAGCCTAGCCAGCTGGCTATTCTTTTGAATATGGTGTAGTTAGAAAAAAACCCAGCAACAACAGATGATGCTAGCtaaggttagcatgctagctatctacactgacagctgtcagttCCCTATTTCTTGATGTTTCTCCAGTCCACGTCGAAATCACCATGACGTTCTTTCCCACCCCCAATTCTAAAACATGTATAAGTAGCCTGCCTCATTCATCAGAGGTGCAACCTAAACAAGCATTCTTGCTCtagggcagagaggaagaggcaaagcgagaggtTTTAATCTGCCCAAATCTGTTTGTGTAAATAAGTCCACGAACTGAATAACTTTTGTATGGAAGTCAATAAGAGTATCAAATTTGGACAACAATAAATGTCATCGCTAATTTGCTACAAGAGGCTTACTTGATTTAATAGAAGTTTCataatggttaggttgttacgaATGCACTGATGTAAGTGGACGCATGTGGGATTTAGGCCACTTTGAAAAAAATGTGTTAATATCAGAGTTGTGCTTGTTGtcatagagatacagtatatagaggACTCATTATGGATCTAGccgttttagcatggacattTCCATTGAGGACTTCCACAATTTTAAAATAGTCAACTGGGTCGCTATTCCGAGCCAGAGAaatcagccaatgaagaagaaaatgtactactttaaAATAGAGAgagcctcaatggtgctgcccatgctgtcCCAGATGCTATAAAGGCACAGATGCAAAGACGAGTCCTCTACGGCCTATTGTTCATGCGCTTATCTGTCCTCTCATGGGCTAGAATGGTCCCATctgatctctcctcctcccatgtGTTTCATCTTTGACatatatttccattgttagagcgatcacttgactatcttgtcaatataatagacaatATCTAGGGCAGGAATTACAT
>XM_021620552.2
CTCCTTCTGTCCTGTCTGCTCACTGCACAGCTGAGACTGGGAGAAAAAGgataagagagagaagaggaggagaagatgtcTACAGGCTGTGGCTGTGTGAGGTCGCCCCCGGAGACAGCGGAACACAGACTGACGGGTGGACAGGAGCACCACTATCAGATGGTGGAGCCTGTGAGGACCCTGCTAGAGGAGGGGGCAGGGATGACCAGAGCTGTGCAGGGGAAACACTGTCCTGAGGCAGTGCACCCCGAGGAGCAGCCAGATGAGCAGGAACTGAAGAAACCACGCAGGAAAGACACGCCCGTCCTCAACACTCCTCCACTCATACCAGGTGTGAGGATggtgaaaggagagaagagaatgaTTCACATGGAGGATGAAGAGAAGGATGGAAAGAACTAGAAGTCATTGGAGGAGAGATTCTTGCCtacaatttttgttgttgttgacatcgTTGTTTCCTGTTGTCACATTACTAATATGTAGCTTATACATGTTTATTAAAAGTAGCTCTACAATGTGTGGCTGTTATCTTTCATAAACAAGGTATAAAGATGTTGTCAATGCATGCATTCAATGTAATATACTGTCTCTAGCCAAAGGTTGCACCGTGGCcattacaatgtaaaaaatagcaTATGTCTTATGGAAGATGCCAAAACGTTGGAGAAAACAATAGAATGAAAAGTCAAAGTTACTGGTTTCCATCTGTGGCAAAGTTTTCCCTAAATGGTTATGTCAAATCCAGCTCCAGAACCAGCCTAGCCAGCTGGCTATTCTTTTGAATATGGTGTAGTTAGAAAAAAACCCAGCAACAACAGATGATGCTAGCtaaggttagcatgctagctatctacactgacagctgtcagttCCCTATTTCTTGATGTTTCTCCAGTCCACGTCGAAATCACCATGACGTTCTTTCCCACCCCCAATTCTAAAACATGTATAAGTAGCCTGCCTCATTCATCAGAGGTGCAACCTAAACAAGCATTCTTGCTCtagggcagagaggaagaggcaaagcgagaggtTTTAATCTGCCCAAATCTGTTTGTGTAAATAAGTCCACGAACTGAATAACTTTTGTATGGAAGTCAATAAGAGTATCAAATTTGGACAACAATAAATGTCATCGCTAATTTGCTACAAGAGGCTTACTTGATTTAATAGAAGTTTCataatggttaggttgttacgaATGCACTGATGTAAGTGGACGCATGTGGGATTTAGGCCACTTTGAAAAAAATGTGTTAATATCAGAGTTGTGCTTGTTGtcatagagatacagtatatagaggACTCATTATGGATCTAGccgttttagcatggacattTCCATTGAGGACTTCCACAATTTTAAAATAGTCAACTGGGTCGCTATTCCGAGCCAGAGAaatcagccaatgaagaagaaaatgtactactttaaAATAGAGAgagcctcaatggtgctgcccatgctgtcCCAGATGCTATAAAGGCACAGATGCAAAGACGAGTCCTCTACGGCCTATTGTTCATGCGCTTATCTGTCCTCTCATGGGCTAGAATGGTCCCATctgatctctcctcctcccatgtGTTTCATCTTTGACatatatttccattgttagagcgatcacttgactatcttgtcaatataatagacaatATCTAGGGCAGGAATTACAT

Function

symbol description
ppp1r17 Predicted to enable protein serine/threonine phosphatase inhibitor activity. Predicted to be involved in regulation of phosphatase activity. Human ortholog(s) of this gene implicated in familial hypercholesterolemia. Orthologous to human PPP1R17 (protein phosphatase 1 regulatory subunit 17).

NR:

description
protein phosphatase 1 regulatory subunit 17

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620553.2 False 1836 mRNA 0.44 4 23763028 23765913
XM_021620551.2 False 1817 mRNA 0.44 4 23763030 23765913
XM_021620552.2 True 1680 mRNA 0.43 4 23763131 23765913

Neighbor

gene id symbol gene type direction distance location
itprid1 LOC106578515 coding upstream 15105 23723213 ~ 23747923 (+)
eif1b LOC106578512 coding upstream 84734 23675584 ~ 23678294 (+)
LOC110535505 LOC106578511 coding upstream 87545 23666722 ~ 23675483 (+)
LOC110535501 LOC106578509 coding upstream 101503 23635899 ~ 23661525 (+)
palmdb LOC106578510 coding upstream 158111 23563675 ~ 23604917 (+)
trdmt1 trdmt1 coding downstream 211435 23977348 ~ 23996262 (+)
cubn cubn coding downstream 230675 23996588 ~ 24049588 (+)
rsu1 rsu1 coding downstream 292811 24058724 ~ 24094985 (+)
c1ql3a c1ql3 coding downstream 331177 24097090 ~ 24103710 (+)
dtx3l1 LOC106578522 coding downstream 380563 24146476 ~ 24149671 (+)
G956792 NA non-coding upstream 989 23761760 ~ 23762039 (+)
G956785 NA non-coding upstream 9526 23753276 ~ 23753502 (+)
G956783 NA non-coding upstream 10737 23751862 ~ 23752291 (+)
G956781 NA non-coding upstream 12770 23750010 ~ 23750258 (+)
G956777 NA non-coding upstream 22064 23740741 ~ 23740964 (+)
G956795 NA non-coding downstream 2125 23768038 ~ 23768562 (+)
G956796 NA non-coding downstream 9560 23775473 ~ 23775681 (+)
G956798 NA non-coding downstream 11400 23777313 ~ 23777694 (+)
G956799 NA non-coding downstream 11995 23777908 ~ 23778122 (+)
G956800 NA non-coding downstream 12967 23778880 ~ 23779171 (+)
G956728 LOC106613263 other upstream 97098 23665288 ~ 23665930 (+)
tlcd4a LOC106570700 other upstream 1021781 22712577 ~ 22741263 (+)
phldb2b tcpe other upstream 3993675 19740565 ~ 19799150 (+)
G951511 NA other upstream 4635943 19126665 ~ 19127085 (+)
G948710 NA other upstream 7161136 16554200 ~ 16601892 (+)
G956797 NA other downstream 9859 23775772 ~ 23776845 (+)
G957942 NA other downstream 834558 24600471 ~ 24601653 (+)
G958300 idi1 other downstream 1028687 24794600 ~ 24795736 (+)
G960696 LOC106583976 other downstream 2947712 26713625 ~ 26797294 (+)
G960816 armc4 other downstream 3162763 26928676 ~ 26929027 (+)

Expression


Co-expression Network