trdmt1 (trdmt1)


Basic Information

Item Value
gene id trdmt1
gene name trdmt1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 23977348 ~ 23996262 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620558.2
ACTCTGATCGGAAACGCACCAGTAATGCTTGTTTACAATGTGTATGCTGTTAAACCTAGATAGCTCAACTAGGGACCAAACATGGAAAACCTCAGAGTACTAGAATTGTACAGCGGAATCGGAGGAATGCATTATGCATTAACGGAGAGTGGTGTGGCAGCAAAGGTGGTAGCTGCAGTGGATGTGAACACCACAGCCAATGAGATCTACAAACACAACTTCCCCAACACTCCTTTACTTCCCAAGACCATAGAGGGAATGACATTGGATGATTTCAACAAACTGGCGTTTGATATGATCTTGATGAGCCCTCCATGCCAACCTTTCACTagGATTGGGTTACAAGGTGACATATCTGACCCCAGAACCAAGAGCTTTCTCTACATCCTCGACCTTCTACCAAGGCTCATCAAGTTGCCACGCTTCATTCTGCTGGAGAACGTGAAAGGCTTTGAGACGTCCTCCGCCAGAGACTCTTTGGTGAAAACGCTAAAGGAATGTGGATACAACTATCAGGAGCTCATGGTTTCTCCTACATGTCTGGGGATGCCCAACTCCAGACTCCGGTATTTCATGATTGCCAAAGCACCACCAGGATCTTTCTCCTTCCACACCACTTCAGAGATCCAGGAAGGTTTCCCGCAACCCGCAGACAAGGTCTTATTAGAGCCCAGTTCTCCAATCTCACCTAGTCCTACTTCAACCGCCTACCAAGAGGAAGAACACAAGGAAGATGAAGGTGGTATCCTGTACAAGCTGGAGCGGGCTCAGGATGCTGAGAGGAAGAGCAGTCAGAACAGAGACCAGTCCCTCAGACAGATCAGTGTCTACCTGGAGGAccagggagaaggggagatggaGCAGTACCTCCTTCCCACGAAGACCTTGCTGCGCTACGCTCTGCTCATGGATATAGTCAGGCCCACCTGCAGGAGATCTGTCTGCTTCACCAAAGGCTATGGACACTACGTGGAGGGAACAGGCTCTGTGCTTCAGTCCTGTATGGAAACCGATATGGAAGCAGCGTTTAAGTCTCCGGAGCGTCTGTCTGATGAGGAGAAACTAAATCAGCTGTCCAGGTTGAAGCTCCGCTACTTCTCCCCCAGAGAGATAGCCAACCTCATGGGCTTCCCCAAGCACTTCACTGTCCCAAAGAACATTTCCACCAAACAGCAATACCGAGTCCTGGGGAATAGCCTGAACGTACATGTGGTCGCCCGGCTCATAGAACTCTTGGTATCCTAACCAGGCATATGCAGCTCGTGGTATCCTAACCAGGTGTATACAACTCATGGTATCCTAACAAAAAATACTATCTGCCTCGGGAAAAATACTGTTTTCCAGTGTATGTTTTCTAACTGAGATAATGTAGCCACAGTCTGTCTGTCCTACAGTCCACAGTTGATCCAGCGGGACAAGTTGCATTCTGTATTTATTGACCAAACTGTGTAAATGATGTTCTACTCGACATGGATTGGAATCATGGAATCAACCTTTGCAGATGCCTTTGCTAACtgaattaaataaaatgttttttgttaCA

Function

symbol description
trdmt1 Predicted to enable methyltransferase activity. Predicted to act upstream of or within methylation. Is expressed in brain; immature eye; and liver. Orthologous to human TRDMT1 (tRNA aspartic acid methyltransferase 1).

NR:

description
tRNA (cytosine(38)-C(5))-methyltransferase

GO: NA

KEGG:

id description
K15336 TRDMT1, DNMT2; tRNA (cytosine38-C5)-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620558.2 True 1543 mRNA 0.48 11 23977348 23996262

Neighbor

gene id symbol gene type direction distance location
ppp1r17 ppp1r17 coding upstream 211435 23763028 ~ 23765913 (+)
itprid1 LOC106578515 coding upstream 229425 23723213 ~ 23747923 (+)
eif1b LOC106578512 coding upstream 299054 23675584 ~ 23678294 (+)
LOC110535505 LOC106578511 coding upstream 301865 23666722 ~ 23675483 (+)
LOC110535501 LOC106578509 coding upstream 315823 23635899 ~ 23661525 (+)
cubn cubn coding downstream 326 23996588 ~ 24049588 (+)
rsu1 rsu1 coding downstream 62462 24058724 ~ 24094985 (+)
c1ql3a c1ql3 coding downstream 100828 24097090 ~ 24103710 (+)
dtx3l1 LOC106578522 coding downstream 150214 24146476 ~ 24149671 (+)
LOC110535520 LOC106578523 coding downstream 176834 24173096 ~ 24188768 (+)
G957316 LOC106583515 non-coding upstream 43879 23933013 ~ 23933469 (+)
G957307 NA non-coding upstream 57389 23919699 ~ 23919959 (+)
G957301 NA non-coding upstream 74516 23902619 ~ 23902832 (+)
G957299 NA non-coding upstream 76026 23900958 ~ 23901322 (+)
G957285 NA non-coding upstream 85087 23892037 ~ 23892261 (+)
G957406 NA non-coding downstream 144561 24140823 ~ 24141306 (+)
G957407 NA non-coding downstream 145183 24141445 ~ 24141684 (+)
G957414 NA non-coding downstream 155712 24151974 ~ 24152283 (+)
G957415 NA non-coding downstream 156809 24153071 ~ 24153331 (+)
G956797 NA other upstream 200503 23775772 ~ 23776845 (+)
G956728 LOC106613263 other upstream 311418 23665288 ~ 23665930 (+)
tlcd4a LOC106570700 other upstream 1236101 22712577 ~ 22741263 (+)
phldb2b tcpe other upstream 4207995 19740565 ~ 19799150 (+)
G951511 NA other upstream 4850263 19126665 ~ 19127085 (+)
G957942 NA other downstream 604209 24600471 ~ 24601653 (+)
G958300 idi1 other downstream 798338 24794600 ~ 24795736 (+)
G960696 LOC106583976 other downstream 2717363 26713625 ~ 26797294 (+)
G960816 armc4 other downstream 2932414 26928676 ~ 26929027 (+)
bambia LOC106578551 other downstream 3412740 27409002 ~ 27412913 (+)

Expression


Co-expression Network