c1ql3a (c1ql3)


Basic Information

Item Value
gene id c1ql3a
gene name c1ql3
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 24097090 ~ 24103710 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036935216.1
attaatcatgtttacatgtaAATCATAAGTGCTGTATTGATTGTAGTCTAAAGAAACACATAGAGATGTTGCCACATAGCCCTGAGTAAACGCTAAAGTAAAATAATCCAATGTGTCTAAGCTTGAAACATTTATATCCTCTATAGCAGTGATTAATGCCATCTTTGTCCAAGGCCTGATTGCATCCCTCCAAGCCTCTCCTCCTAGTGATGCCAAGTCTGAGTTTTGGACCGAGCGAGATATCAAGATAACGGAATGGGTGGTGTTACTCTGCACTATATTTCCATCTTTTATAAGACGGTGCACTATCTtgccctccctctctgtttttcttctctctctgtgcagTGCAGAGTACTGCGCATACAACTCTGTAAGCTACGCGCTCTGATCAGAGGCACTCCGCTCTCCACACAGGGCTTAATGACATTACCAGCGGTTTATAGAGTCGTGCTTACACCTGATATGCTGCTATTCTTTAACAAACTCTGGACTGTGTACACAGTGGTAGACTTTTAGACCAGTTGGCTTTGGATATAAGCTGTGGATCGTTGGAAaataaaggagaggaaggagtgcgTTCTCCCACCGAAGTGTTTTTTGTGTGCCTCGCGTCCACACGTGGCTGCTTACAGCAGGGCTTTAAAGTACAGCCGCCACCTCACAGATGCTGAAGACAGTGTTTTTTTAACCACTGACGACTTAAAGCGCGAGCAGCCAGGAAAAGGGCTGAACTTTCCGATTCGGTGAGACTTAGATAAGCAAACATCAGCACAAAAAGTAAAGAgcggaaagaagaaaaaaaaacagacgcGCAGGGGGCTTGGCCCAAAAAAAAGTTCATTACCATTAACTTACCAACAAACCAATATTGGCtgtatatttttttctttttaaaaGCGTACCTCATCAACCACCAAGATTTCACCCAAAAGCAGACAAGAGGATCGCCCTGCGCTGACGAGACTGGTCGGCAGGAAGCGGCTAATAGCGGCTGGAGTGCTTGGAGTCGTCATGGTGTTAGTGCTGGTGATTCTGATCCCAGTTCTGGTTAACTCCGCTGGAACTTCAGCGCACTATGAGATGCTGGGAACCTGCAGGATGGTATGTGATCCATATGGAACCAAGTCACCGACCGCTACGGCAGACACGGTGCGAGCGGACAACAGCCTCATGCAGTCTTTACCAACTTTTATAACAGGTCCGAAAGGGGAACCGGGCCGCCCGGGGAAGGCTGGACCCAGAGGCATCCCAGGTGATCAGGGCCCGCCCGGTCCGATGGGGCCACCCGGGGAGAAGGGGGAACCGGGACGGCCTGGACTACCGGGGCCACCGGGACCCAATGCCGCGGCGGGGGCTATCAGCGCGGCTACGTACAGCACCGTTCCCAAAATCGCGTTTTACGCAGGCCTTAAAAAACAGCACGAGGGCTACGAGGTGCTGAAATTCGACGACGTGGTCACTAATCTGGGGAACCATTACGACCCCACAACCGGGAAGTTTACCTGCTCCATACCTGGGATATACTTCTTCACTTATCACGTCCTGATGCGGGGAGGGGACGGAACCAGCATGTGGGCAGATCTCTGCAAAAACAATCAGTGCTTCAACGATCAGAATTTACAGAATCTGCTCATAATACTAGCTGCTGTCAGAGAGCACATCTAATCCCTATTCCCTCGGGACATCCCGTGTCACCAAGCCACTGTGAGTCTCCTCGACTCACAGAGCCCGCTTCGCCATGCGCATCTCCCTGTCAACGGCTACTGCGCTCGGTGTACCGGGCGACCAGGCAGCCACTTAGGCTGAAGCCCGGAGCTCATTCTGcacaacacagctacagtacGGGCCAATCAGTtcacagcacagacagacaggttcatCTGAAGCAAAAACTGTACTTTTggtgtgtaaaaaaaaagaagaaaaaatacaaaaaactaaGACTCTGCCAagtgtgttttgtttttattgTCACATCCAGTGTTTGAAAACAGCATGCTGAGCTGAGGACTAGTAGAGGTCAAGCGTGAGCTAAAGCAGAAATAAACAAttacaaataataaaatacattCTTTATTTATTCACTCACTCAGATAATTAAAATAATTTGGATTACACTAAAATATGCCTTTAGGCACGAGCGTTTACAGTATGATTTTAAAATAAAGTCGTCTTAAATAATTCAGATGCTATTCATCATTTTATTATAGTGAATTAACAGGGCTTGCTGTGCATGCCTTTAGTGGCATTTAAAGGTTGTTCCCCATTTGAATCTCCACACACAGAACATCAAAATAGTGTTATGCAAACAGTGGATTTATAGCAAATTCCCTAATTTACAGTCTCATGTTACACCTTACAGAAGGTGTCTGAGGAGACTCATTTGAATAAACAACAGCCCACAATTCCCTGCTATGTTTCACTTTCTAGATCTTAATGATATTCATGTTCATCAATCAATGAAGACTGATGATTAGGCTAATTAGGGCGATATTGCAGAACAATTTCTGGTTGATGACAGGTCTGGATAGGTGTAGCCTAATTGGGCTTAGGCCAATCCTTCATATGGAAGTCTACCATCCCCTTTCTCTATGTGATATTGATATAACATTTTTATTGGTGGTTTTAATTCATTGTGGTATTTTGTTATCTCGCTCAAATAGTTGTTTTAGCAATAGTTAGGGTCAGAATGCAGAATTCAAGGCTCTTCCTGATTTTGAAATCTTCCTGACAAGCCTCTGGTGTCCGGGTAGGCCTATTGTGTATTGGAGCTTTCCATGGGGCTGAAACAGTGATCACCTCTTCTTTATAATCTACATCGGAAGCAAGACCAAGGCCTACCCTATGACTCTAATATGTTGTTTTTAGAAGAGTGAGCAGTCCACTACAGTACTGCAATTTGGAGTCATAAACATTAGATTATGTACACATGTTGTATAAAAACTCCCCAGAAGGCAATTCAATTAAGTTGCATACTGACATAAAATGAATCTTTAATATCATttgcattaaacatttatgaaacTAAAGATAATGTTCTTGTAAAAAATGTAAGCAAACTTGTTAGTGTTAATCCCACACAATATTTGAAGTTCACTGATAACTGAAACATTGCTAGTCTGGCAACCTTCGGGGTGGAGAACCTGTTATGGGACTCCAATGAGAAACCTTGGGTTAAGGTGCTGATTCTATTCCATTCAATACGACTTTAATTATCCACTCAAGGGAAATTAAGAAAGGCATATTGTATATCAACATGGCTATTCTCCTCTAGGCTTGAGCCAGTGCCACAGTGAGTTGATGGCAGTTAACTATATACGCCTGTCTCCATTACCCTGTAGGTTTGAGCCAATGCCATGTGTTCATGATAACAAACTGTGTCTCCATACATTCCCCTCTAGGTTCAAGACAGTGCTAACTGTACCCATTACTCCATTCCCTTGTGGGTTGGAGCCAGTGTTAACTAATTATATACATGAACTAACTATGTAAACATGTC
>XM_021620561.2
tgtaAATCATAAGTGCTGTATTGATTGTAGTCTAAAGAAACACATAGAGATGTTGCCACATAGCCCTGAGTAAACGCTAAAGTAAAATAATCCAATGTGTCTAAGCTTGAAACATTTATATCCTCTATAGCAGTGATTAATGCCATCTTTGTCCAAGGCCTGATTGCATCCCTCCAAGCCTCTCCTCCTAGTGATGCCAAGTCTGAGTTTTGGACCGAGCGAGATATCAAGATAACGGAATGGGTGGTGTTACTCTGCACTATATTTCCATCTTTTATAAGACGGTGCACTATCTtgccctccctctctgtttttcttctctctctgtgcagTGCAGAGTACTGCGCATACAACTCTGTAAGCTACGCGCTCTGATCAGAGGCACTCCGCTCTCCACACAGGGCTTAATGACATTACCAGCGGTTTATAGAGTCGTGCTTACACCTGATATGCTGCTATTCTTTAACAAACTCTGGACTGTGTACACAGTGGTAGACTTTTAGACCAGTTGGCTTTGGATATAAGCTGTGGATCGTTGGAAaataaaggagaggaaggagtgcgTTCTCCCACCGAAGTGTTTTTTGTGTGCCTCGCGTCCACACGTGGCTGCTTACAGCAGGGCTTTAAAGTACAGCCGCCACCTCACAGATGCTGAAGACAGTGTTTTTTTAACCACTGACGACTTAAAGCGCGAGCAGCCAGGAAAAGGGCTGAACTTTCCGATTCGGTGAGACTTAGATAAGCAAACATCAGCACAAAAAGTAAAGAgcggaaagaagaaaaaaaaacagacgcGCAGGGGGCTTGGCCCAAAAAAAAGTTCATTACCATTAACTTACCAACAAACCAATATTGGCtgtatatttttttctttttaaaaGCGTACCTCATCAACCACCAAGATTTCACCCAAAAGCAGACAAGAGGATCGCCCTGCGCTGACGAGACTGGTCGGCAGGAAGCGGCTAATAGCGGCTGGAGTGCTTGGAGTCGTCATGGTGTTAGTGCTGGTGATTCTGATCCCAGTTCTGGTTAACTCCGCTGGAACTTCAGCGCACTATGAGATGCTGGGAACCTGCAGGATGGTATGTGATCCATATGGAACCAAGTCACCGACCGCTACGGCAGACACGGTGCGAGCGGACAACAGCCTCATGCAGTCTTTACCAACTTTTATAACAGGTCCGAAAGGGGAACCGGGCCGCCCGGGGAAGGCTGGACCCAGAGGCATCCCAGGTGATCAGGGCCCGCCCGGTCCGATGGGGCCACCCGGGGAGAAGGGGGAACCGGGACGGCCTGGACTACCGGGGCCACCGGGACCCAATGCCGCGGCGGGGGCTATCAGCGCGGCTACGTACAGCACCGTTCCCAAAATCGCGTTTTACGCAGGCCTTAAAAAACAGCACGAGGGCTACGAGGTGCTGAAATTCGACGACGTGGTCACTAATCTGGGGAACCATTACGACCCCACAACCGGGAAGTTTACCTGCTCCATACCTGGGATATACTTCTTCACTTATCACGTCCTGATGCGGGGAGGGGACGGAACCAGCATGTGGGCAGATCTCTGCAAAAACAATCAGGTTCGAGCCAGTGCCATAGCCCAGGACGCTGACCAGAACTATGATTATGCCAGTAACAGTGCCGTGCTGCATCTGGAGCCTGGAGACGAGGTCTACATCAAACTGGACGGGGGCAAGGCCCATGGGGGCAACAACAACAAGTACAGCACCTTCTCTGGATTCATCATCTACGCAGATTAGCTAACAGACCTAGCCTCAAACCTCAGTCAACCTACAGCCTCACCTCTCAGTCAACCGACAGCCTCACCTCTCAGTCATACGGAACACCCTCTCCATGATCTGTCCTATAGTAACTATAGGCCCTAGTTACTAAAGTTACCATAGTGACTAATACTATATTTGAGAGTTGAGGCTATAGGACCTAGCCTCAACTCTCATTCCTCCCTACAACTTCAACCCTCAGTCACCTACTTACAGAGCCCCCTCTCCATCTATATGATCTAGCCTCAACTTTCAACCCTCAGTCATCTAATAATAGCCCTccccataacccccccccccccccccccccccctggctgTAGAGGGTGGGTGTTTCACAACGACAGAGTAATTGAGTTTTGTCCAATCCTGCTACTGGATCCAAAGCTGCCTGCGGGAACTGCCTGTGTGTAAAGAAAATGAAAGAAGAATTGAAGAAGAAGAGTTACGGAAGGAAAATGTCAAAACATAAATTGTAAGTCAAACAGAAGTGCTGGCCTTCATTATTCTACCACCAAAGCAGTAAACTAGTGTACATCTTTGTTTGTGTAGCTATATAAACAAAGCCTAATCGTGTGATGACGAGAGTTTTTATGAACACAGAACCAGATGATTGTTTGCAATAACCCACATAAACAAACCATAATTGTCCTTGCTGTGCGTGACGTGTTAAAACCGAAGGCAATACAATACTTTCTGAGGGTTGCCAAGCAACTCGGATGCTTACATGTTGGAGAAAGGTTGGTTGTGTTGTTGtagggagagggggggatgatGACATCATCTTAAATCTGGTTTCAGTTCATGGTTGGGAATGGACTGTGTATATGGTGAAGTCTCTACTAGCTCTATAAATAGTCATTCCTTTCCCTTATTAATTAAGTAGACTTTAAGGCCTTATAAAAAAATACCTTCAACATcatatttaaagggatagttcctTTATGGCAGAGCTGCTTTCTTATGGTTATAGCAGACACAGCCTTTTTGTTTACAAATGGTACACATGGTTTCTATACATTTTTAGaaaaaaaggtgttatctagaTCCTAAAAGAGTTATTTGactgtcccaataggagaaccctttgaagaaccctttttgattcaaggtagaacccttttgggttccatgtagaacggGTTCTAGTTGGAACAACAAATGGTTCTagttggaaccaaaagggttctcctacggggacagctgacaaacccttttggaacccttttttctaagtgtacagtatgtatacttTTTCTGAAGGTCAAACCTAGACTGTTTAGTGGTTAGGTCCACTTAGAACCACCTTGTTTTACACTAGATGAATCATCGAGTGCTGTGTGGGAGTGGCGCTACCTGACGTGAAACAATGCTTAGCCCCATTAGTTCAACACAACAGTGTGAAGTTACAGTATTGGAATGCTACTGGAGGAAAGCACTATGCAGAACTACGAGTACGGCTACTATGtaaatgtatatgtatgtatcCTAAAGAAAGTTTAACAAGAATGTGGATAGCACCACTGAATTACTGTGTAAATATTGTAGTGATTATGAAATTGTTCTTATTTTTCGCCCCTATAAATGTACAAAACTGTTGAAAGAAAGAGCACGGGTTGGATAACCTACCGCTTCGTATTAGAACCATAGTCTAACTTAATGGGACATGCAGTACCAGTCCTATACTTACTGATACGTGTGTGACTATGTCTGCGTCTGagatggcacactattccctatatagtgcacagctTTTGATCCGAACCCTATGggtccttgtcaaaagtagtgcactatatagagaatagggtgccatttcagaccgAGGCTATTAGATCAGGACACGTTCTTCTATTGTATTCCCTGGACACACTTCACCTTGTGTACTGTTTACTCAAATCATGTTGCCATTAAATGGACAAATCGAATCAGA
>TU1091518
TCCAAAGCTGCCTGCGGGAACTGCCTGTGTGTAAAGAAAATGAAAGAAGAATTGAAGAAGAAGAGTTACGGAAGGAAAATGTCAAAACATAAATTGTAAGTCAAACAGAAGTGCTGGCCTTCATTATTCTACCACCAAAGCAGTAAACTAGTGTACATCTTTGTTTGTGTAGCTATATAAACAAAGCCTAATCGTGTGATGACGAGAGTTTTTATGAACACAGAACCAGATGATTGTTTGCAATAACCCACATAAACAAACCATAATTGTCCTTGCTGTGCGTGACGTGTTAAAACCGAAGGCAATACAATACTTTCTGAGGGTTGCCAAGCAACTCGGATGCTTACATGTTGGAGAAAGGTTGGTTGTGTTGTTGtagggagagggggggatgatGACATCATCTTAAATCTGGTTTCAGTTCATGGTTGGGAATGGACTGTGTATATGGTGAAGTCTCTACTAGCTCTATAAATAGTCATTCCTTTCCCTTATTAATTAAGTAGACTTTAAGGCCTTATAAAAAAATACCTTCAACATcatatttaaagggatagttcctTTATGGCAGAGCTGCTTTCTTATGGTTATAGCAGACACAGCCTTTTTGTTTACAAATGGTACACATGGTTTCTATACATTTTTAGaaaaaaaggtgttatctagaTCCTAAAAGAGTTATTTGactgtcccaataggagaaccctttgaagaaccctttttgattcaaggtagaacccttttgggttccatgtagaacggGTTCTAGTTGGAACAACAAATGGTTCTagttggaaccaaaagggttctcctacggggacagctgacaaacccttttggaacccttttttctaagtgtacagtatgtatacttTTTCTGAAGGTCAAACCTAGACTGTTTAGTGGTTAGGTCCACTTAGAACCACCTTGTTTTACACTAGATGAATCATCGAGTGCTGTGTGGGAGTGGCGCTACCTGACGTGAAACAATGCTTAGCCCCATTAGTTCAACACAACAGTGTGAAGTTACAGTATTGGAATGCTACTGGAGGAAAGCACTATGCAGAACTACGAGTACGGCTACTATGtaaatgtatatgtatgtatcCTAAAGAAAGTTTAACAAGAATGTGGATAGCACCACTGAATTACTGTGTAAATATTGTAGTGATTATGAAATTGTTCTTATTTTTCGCCCCTATAAATGTACAAAACTGTTGAAAGAAAGAGCACGGGTTGGATAACCTACCGCTTCGTATTAGAACCATAGTCTAACTTAATGGGACATGCAGTACCAGTCCTATACTTACTGATACGTGTGTGACTATGTCTGCGTCTGagatggcacactatatagagaatagggtgccatttcagaccgAGGCTATTAGATCAGGACACGTTCTTCTATTGTATTCCCTGGACACACTTCACCTTGTGTACTGTTTACTCAAATCATGTTGCCATTAAATGGAC

Function

symbol description
c1ql3 Predicted to enable identical protein binding activity. Predicted to act upstream of or within regulation of synapse organization. Predicted to be located in extracellular region. Predicted to be part of collagen trimer.

NR:

description
unnamed protein product

GO:

id name namespace
GO:0005581 collagen trimer cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036935216.1 False 3502 mRNA 0.44 2 24097090 24101564
XM_021620561.2 False 3719 mRNA 0.46 2 24097106 24103710
TU1091518 True 1476 lncRNA 0.39 2 24102158 24103697

Neighbor

gene id symbol gene type direction distance location
rsu1 rsu1 coding upstream 2105 24058724 ~ 24094985 (+)
cubn cubn coding upstream 47502 23996588 ~ 24049588 (+)
trdmt1 trdmt1 coding upstream 100828 23977348 ~ 23996262 (+)
ppp1r17 ppp1r17 coding upstream 331177 23763028 ~ 23765913 (+)
itprid1 LOC106578515 coding upstream 349167 23723213 ~ 23747923 (+)
dtx3l1 LOC106578522 coding downstream 42766 24146476 ~ 24149671 (+)
LOC110535520 LOC106578523 coding downstream 69386 24173096 ~ 24188768 (+)
steap2 steap2 coding downstream 85431 24189141 ~ 24198511 (+)
LOC110535521 mmp16 coding downstream 191779 24295489 ~ 24367062 (+)
LOC110535524 LOC106578570 coding downstream 394244 24497954 ~ 24532037 (+)
G957344 NA non-coding upstream 105966 23990555 ~ 23991124 (+)
G957316 LOC106583515 non-coding upstream 163621 23933013 ~ 23933469 (+)
G957307 NA non-coding upstream 177131 23919699 ~ 23919959 (+)
G957301 NA non-coding upstream 194258 23902619 ~ 23902832 (+)
G957299 NA non-coding upstream 195768 23900958 ~ 23901322 (+)
G957406 NA non-coding downstream 37113 24140823 ~ 24141306 (+)
G957407 NA non-coding downstream 37735 24141445 ~ 24141684 (+)
G957414 NA non-coding downstream 48264 24151974 ~ 24152283 (+)
G957415 NA non-coding downstream 49361 24153071 ~ 24153331 (+)
G957417 NA non-coding downstream 52032 24155742 ~ 24156009 (+)
G956797 NA other upstream 320245 23775772 ~ 23776845 (+)
G956728 LOC106613263 other upstream 431160 23665288 ~ 23665930 (+)
tlcd4a LOC106570700 other upstream 1355843 22712577 ~ 22741263 (+)
phldb2b tcpe other upstream 4327737 19740565 ~ 19799150 (+)
G951511 NA other upstream 4970005 19126665 ~ 19127085 (+)
G957942 NA other downstream 496761 24600471 ~ 24601653 (+)
G958300 idi1 other downstream 690890 24794600 ~ 24795736 (+)
G960696 LOC106583976 other downstream 2609915 26713625 ~ 26797294 (+)
G960816 armc4 other downstream 2824966 26928676 ~ 26929027 (+)
bambia LOC106578551 other downstream 3305292 27409002 ~ 27412913 (+)

Expression


Co-expression Network