dtx3l1 (LOC106578522)


Basic Information

Item Value
gene id dtx3l1
gene name LOC106578522
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 24146476 ~ 24149671 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620562.2
CTCCCGCCACACCCACCCGAACACACATGACAGGACTGCCAGCATTATTGTCAAAAACATTTGACCGCAGCATAGTACTCAGGTGACAGCTTGGTAGAGGAAACAGAGTTACTCAGACCCAGTCCCAGACCGTAATGGTTAGTATTGGGACGAGCTGAATGAACGTGGTCTGAGCTACAGGACCAGAGGAGAAAATAAGGCTCTTGAGGAGTAACAAGGCTGTGGAGACCATCACACAATTGAGTGACACAGCCCTGCTATGGGTGCTAAACAAGAGAAAATGTATTGCACCAGGTACTTGGATGGTCAGGGACCCCCAGCACTGATAGACCAAGCTAATGGGGATGTGAAGGGGAGCTATGCTGAGGTGTCAGAGGGCAGCCAGCCAGAGGGACAGATGACATGGGTCATTCTACACAGAGACCTCCCTGGTTACCCAGGGGACAACACCATACAGATCAATTATGTTTTTGCAGATGGAATGCAAACAGACAAGCATCCCAATCCAGGGCAGACGTTTTTGGGAATGAGGACATTGGCGTATTTGCCCGACAACCGCGATGGAAGGAGGATCCTGGGGCTATTGGATAAGGCCTTCTACCAGAGGCTGGTCTTTACTGTAGCAACCAATGAGAATGGAGAGGATATGGTCACATGGGCAGATATACCCCATAAAACAACCCCTGATGCAGGAAAAGACAGTCACAGCTATCCAGACCCGGACTACTTGAAAACAGCGAGGAAAATACTGAAAGACAAAGGCATCGAATGAGAGGCGACTAAGATCCAATCAACATCAGTTATCAACACTGTCAACGTCAACAGTAATGTCTGAAAGGTGCTGATTGCTCTGTCGTAGCCTACAGGTCCCGGTGTACAATTATTTGAGACCTCTACAGCAGGATTACGTACAAGTTTATTAGCTGCTGTAATGTATCGTGTTGGTTTTGTTTCTTGAAAGCTTTGATAATATATTAATATTTTAGACTACAGGGTCCTTATGTACAGAATGTACAATAAATAGCTGTTTGCTGCACACTC

Function

NR:

description
E3 ubiquitin-protein ligase DTX3L-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620562.2 True 1041 mRNA 0.47 5 24146476 24149671

Neighbor

gene id symbol gene type direction distance location
c1ql3a c1ql3 coding upstream 42766 24097090 ~ 24103710 (+)
rsu1 rsu1 coding upstream 51491 24058724 ~ 24094985 (+)
cubn cubn coding upstream 96888 23996588 ~ 24049588 (+)
trdmt1 trdmt1 coding upstream 150214 23977348 ~ 23996262 (+)
ppp1r17 ppp1r17 coding upstream 380563 23763028 ~ 23765913 (+)
LOC110535520 LOC106578523 coding downstream 23425 24173096 ~ 24188768 (+)
steap2 steap2 coding downstream 39470 24189141 ~ 24198511 (+)
LOC110535521 mmp16 coding downstream 145818 24295489 ~ 24367062 (+)
LOC110535524 LOC106578570 coding downstream 348283 24497954 ~ 24532037 (+)
cngb3.1 LOC106578566 coding downstream 383408 24533079 ~ 24566994 (+)
G957407 NA non-coding upstream 4792 24141445 ~ 24141684 (+)
G957406 NA non-coding upstream 5170 24140823 ~ 24141306 (+)
G957344 NA non-coding upstream 155352 23990555 ~ 23991124 (+)
G957316 LOC106583515 non-coding upstream 213007 23933013 ~ 23933469 (+)
G957414 NA non-coding downstream 2303 24151974 ~ 24152283 (+)
G957415 NA non-coding downstream 3400 24153071 ~ 24153331 (+)
G957417 NA non-coding downstream 6071 24155742 ~ 24156009 (+)
G957391 NA non-coding downstream 49714 24199385 ~ 24199770 (+)
G957432 NA non-coding downstream 54114 24203785 ~ 24203992 (+)
G956797 NA other upstream 369631 23775772 ~ 23776845 (+)
G956728 LOC106613263 other upstream 480546 23665288 ~ 23665930 (+)
tlcd4a LOC106570700 other upstream 1405229 22712577 ~ 22741263 (+)
phldb2b tcpe other upstream 4377123 19740565 ~ 19799150 (+)
G951511 NA other upstream 5019391 19126665 ~ 19127085 (+)
G957942 NA other downstream 450800 24600471 ~ 24601653 (+)
G958300 idi1 other downstream 644929 24794600 ~ 24795736 (+)
G960696 LOC106583976 other downstream 2563954 26713625 ~ 26797294 (+)
G960816 armc4 other downstream 2779005 26928676 ~ 26929027 (+)
bambia LOC106578551 other downstream 3259331 27409002 ~ 27412913 (+)

Expression


Co-expression Network