Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110535521 |
| gene name | mmp16 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048575.1 |
| NCBI id | CM023229.2 |
| chromosome length | 86280908 |
| location | 24295489 ~ 24367062 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| mmp16 | Enables metalloaminopeptidase activity; metalloendopeptidase activity; and zinc ion binding activity. Involved in protein processing. Is integral component of plasma membrane. |
| description |
|---|
| matrix metalloproteinase-16 isoform X4 |
| id | description |
|---|---|
| K07996 | MMP16; matrix metalloproteinase-16 (membrane-inserted) |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021620567.2 | False | 6752 | mRNA | 0.46 | 11 | 24295489 | 24367062 |
| XM_021620569.2 | False | 6737 | mRNA | 0.46 | 10 | 24295489 | 24367062 |
| XM_021620568.2 | False | 6742 | mRNA | 0.46 | 11 | 24295490 | 24367062 |
| XM_021620570.2 | True | 6727 | mRNA | 0.46 | 10 | 24295490 | 24367062 |
24,230,000
24,240,000
24,250,000
24,260,000
24,270,000
24,280,000
24,290,000
24,300,000
24,310,000
24,320,000
24,330,000
24,340,000
24,350,000
24,360,000
24,370,000
NC_048575.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| steap2 | steap2 | coding | upstream | 96978 | 24189141 ~ 24198511 (+) |
| LOC110535520 | LOC106578523 | coding | upstream | 106721 | 24173096 ~ 24188768 (+) |
| dtx3l1 | LOC106578522 | coding | upstream | 145818 | 24146476 ~ 24149671 (+) |
| c1ql3a | c1ql3 | coding | upstream | 191779 | 24097090 ~ 24103710 (+) |
| rsu1 | rsu1 | coding | upstream | 200504 | 24058724 ~ 24094985 (+) |
| LOC110535524 | LOC106578570 | coding | downstream | 130892 | 24497954 ~ 24532037 (+) |
| cngb3.1 | LOC106578566 | coding | downstream | 166017 | 24533079 ~ 24566994 (+) |
| rmdn1 | rmdn1 | coding | downstream | 224061 | 24591123 ~ 24599218 (+) |
| LOC118937338 | NA | coding | downstream | 365308 | 24732370 ~ 24746682 (+) |
| LOC110535530 | LOC106578529 | coding | downstream | 430184 | 24797246 ~ 24827022 (+) |
| G957748 | NA | non-coding | upstream | 6991 | 24285508 ~ 24288498 (+) |
| G957738 | NA | non-coding | upstream | 24086 | 24271188 ~ 24271403 (+) |
| G957452 | NA | non-coding | upstream | 62496 | 24232738 ~ 24232993 (+) |
| G957432 | NA | non-coding | upstream | 91497 | 24203785 ~ 24203992 (+) |
| G957391 | NA | non-coding | upstream | 95719 | 24199385 ~ 24199770 (+) |
| G957920 | NA | non-coding | downstream | 55354 | 24422416 ~ 24422699 (+) |
| G957964 | NA | non-coding | downstream | 101148 | 24468210 ~ 24468665 (+) |
| G958002 | NA | non-coding | downstream | 172034 | 24539096 ~ 24539325 (+) |
| G958007 | NA | non-coding | downstream | 177974 | 24545036 ~ 24545304 (+) |
| G958008 | NA | non-coding | downstream | 178658 | 24545720 ~ 24545989 (+) |
| G956797 | NA | other | upstream | 518644 | 23775772 ~ 23776845 (+) |
| G956728 | LOC106613263 | other | upstream | 629559 | 23665288 ~ 23665930 (+) |
| tlcd4a | LOC106570700 | other | upstream | 1554242 | 22712577 ~ 22741263 (+) |
| phldb2b | tcpe | other | upstream | 4526136 | 19740565 ~ 19799150 (+) |
| G951511 | NA | other | upstream | 5168404 | 19126665 ~ 19127085 (+) |
| G957942 | NA | other | downstream | 233409 | 24600471 ~ 24601653 (+) |
| G958300 | idi1 | other | downstream | 427538 | 24794600 ~ 24795736 (+) |
| G960696 | LOC106583976 | other | downstream | 2346563 | 26713625 ~ 26797294 (+) |
| G960816 | armc4 | other | downstream | 2561614 | 26928676 ~ 26929027 (+) |
| bambia | LOC106578551 | other | downstream | 3041940 | 27409002 ~ 27412913 (+) |
