LOC110535524 (LOC106578570)


Basic Information

Item Value
gene id LOC110535524
gene name LOC106578570
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 24497954 ~ 24532037 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036935220.1
GGGGCTGCTTGCCTCAGAGGAGGTTATTAGTGTGCTGTATTAGTGGGTCTAACAGCATCAGAGGCCTAATTCTATCAGAGGTCCGCAGGTTATGGGGACAGCAACCTAGAGGACTGTATAGCTGAGCatgacatagagagacagagagagaagagaacagggaaAGGGAAAAGCTTGGAGGGGAACTCACTACCACCACCTCTGTCCACAGCAGAGTCTGTTGGCTACCCAGCTATACAGCCATGTTTGGCAAATTGAAGAGGATGTTTATCCCCCAACCTCCAGCAGCCCCGGTCTCTGCTCCAGCCTTGGCCTCTGCCTCAGCCGCGGCCTCTGCCCCAGCCGCGGTCCCTGCCCCAGCCGCGGACCCTGCCCCAGCCGCGGCCCCTATTCCAGCCCCGGCCCCAGCTCCTGCACCTGCTAAGCAGGAACATAAGCCTGCAGATAAAGAAAATGGGGCCAAGAAAGAGGATAAACCAGCAGAGCCTGCACATAACCCAGCCCCGGCTTCAGCCACTTCTCCAGCATCTGCTGCGGCTCCAGCTGCAGCCCCAGCCGCTACCCCAGCCAACCCTGGCCAGGAGGAAGCAGAGGGAGAAGAAgttccccctcctccaccacctcctatAGTGGTAAATAGGTACTCTGATGATCAGCTCCGGGTCATAgtgaagaggatgagagagagaacagaaatatACAGAGAGAAGCTCATAGACCCACACGCATCCTCACCTGAATTCAGCCCTCCAGTCACTCCCATTTATCGAAAAAAGGATTATGAAATATTAATGAACGAGAGGCTAATAAAAGAAGAGCAAGATAGGATAAAGAAAGAAGGGGAAGACTTAAAAAagaaagaggaggcagagaagaaAAAGCAGGAGATGGCGGAGAAGAAAGCGGCAGAGCAAAAAGCGAAAGATGAAGCAAAAGCATCGGAGCCTGTGGTCAAACCAACTGTTGGCCAGGAAGTTGCCGCCTTCCTTGACAGGAGGCTAAAACCTATCGAGGATGCGATGGACTCAGTGCTGCCATCCACCATCGATCCATTCTCAGatcACACGTACATCGCGTGGCTCACTCTGGTGACTCTGGCCTTCAACTACAACACCTGGTTCATGACGGCTCGTCTGTGTTTCCCCTACCACACCCCGGAGTGGATCCCTTACTGGATAACCATGGACCTTGTGGCTGATTTCATCTATCTCATTGACTCAATCTTCTTCCAGGCCCGCAAGCAGTTCGTCAAAGGAGGGGACATCATTAAAGACAGGATTATAACCAAAGCGTACTACAGAAACTCTGAGAGATTTAAGATGGACATGATAGCAATGGCACCCATAGACTTGCTATGCTTCCATTTCGGGTACAAATCCATCTTCAGATTCAATCGAATGATAAAGGTGGACACATTCTTTGAGTTCAGTGATCGTCTGGAGAGCCTCATGTCCAAGGCCTACATTTGGAGAGTGGTCCGCACCATTGGCTACCTGCTCTTCATGCTCCACCTCAACGCCTGCGCCTACTATGTGGCCTCGGCCTACCAGGGCATCGGCAAGACCACATGGGTCTACACTGGCAAAGGCAGCGCttaCCTGAGCAGTTTCTTCTATGCGGAGAAATCCCTGCTGATGATCGCAGAGTTGCCATTTCCCGACACCTTATTCGGCCAGTTGTTTCAGATGGCCAACTATTTTTTCGGCGCCTTCTTTTTGTCCATCTTTCTTGGCCAGATGAGAGATGTCATTGGGGCAGCCACCACAGGCCAGACCTACTTTCGTTCCTCCATGGACAACACTGTGTATTATATGGTGTCAAATAACATCCCCAAACTGTGCCAGAACAGAATACGCACCTGGTACAACTACACCTGGGACGCCCAGGGCATGCTGGATGAGTCTGAGCTGCTGGAGCAGATGCCTCTCGTCATGAGGACAGCCATTGCTGTTGACATTAACCTGGCTACCTTCCAGAAAATTGATCTATTTAAGGGTTGTGATAACCAGATGTTGGTAGACATGTTGCTGAGGCTTAAGTCTATTATATATCTACCTGGGGACTTTGtggtgcagaagGGAGATATTGGTAAAGAGATGTACATAATCAAGTCTGGAGCAGTACAGGTGGTTGGTGGACCAGATAACTCCATCGTGTTCGTTACACTGAAGGCCGGCTGTGTGTTTGGAGAAATCAGTCTGTTGCAATCGTCTAAAGATGGCGGGAACAGGAGGACAGCTAATGTCAAAGCTCACGGCTTTGCTAACCTGTCCGTCCTGGAAAAGAAGGATCTCTTTGAAATTCTGGTCCACTACCCAATGGCTCAGAAGGTTCTGGCCAGGAAAGGAAAGAAACTGATGAAGGCTAAGGGTCCAGCTGCTGCTAAGGCTGTTGAAGATAAAAAGAAAGGACTGGCGCTGTTCGGACCCAAACCCCCCACTCCTAAAATGCTGCGTGTCTTTGGGGGCGACAAAGGCTTTTTGGAGAAACTCAAGCATGCCACTCAAAATCATAAAGATTGAGAATATCAAACTGCATCGTTTCTCATATGTATTACTTTTGTGGTGAATTTACAGTGCATTATTGTTCAATCCCCTCTTTACTCACAGCTGAATGAacagtatgtgagtgtgtgtacagaaCACTATTTTGAGGGATTCGTGTAAGAGGGATACAACTACCCTCTCGCATACTATCCTTTAGAATTGTTTAATCTTTCAAAAACTTTATTAAGATGTGCAATAATTAAAGAAGTGGAAAAAACGAATATTTCTAGAAGTGTTTTGATCATTTTTCTTTTCATATCAATTATAAATTATATTTCAGGTTtagaaactgttttttttttttttttggaccaATCACGATTTGTATTTGCCGATACACAACTCATGTAGTTTGTGGTGGCAGTTATGGATGCAGTGCCAATCAAAGGATTTATTTTTCTGTGTAACGGGTAACAGTTTAGCTACGAAACAAGCTACTTAAGTGACATTTAATACGATCTGTCTGCTTTGTAAGATACACATTTacctaaataaatacattctcaTTTACTAACAACTGCATCAGTTCCATAGTATCCTATTCTTCTTCGTGAtctattgtgtgttgtgttgaataGTAGTTGAATGTGAAAGCAAGCCAACCATGGAGATCTCAGTCCAATAATCCCCTTATCCAGGGTGGGACATTGTGAAGTCTTAGCTAGGAAAGGGGCGGGACATTGTGATGTTTAATTAAGTAAGtggtctcctctctgtatctgtccccAGCTTTAACACACAGTAAGCAGTGAAGCTAAGAATAACCCaaatagggcctcccgggtggcgcagtggttaagggcg
>XM_036935221.1
GGGGCTGCTTGCCTCAGAGGAGGTTATTAGTGTGCTGTATTAGTGGGTCTAACAGCATCAGAGGCCTAATTCTATCAGAGGTCCGCAGGTTATGGGGACAGCAACCTAGAGGACTGTATAGCTGAGCatgacatagagagacagagagagaagagaacagggaaAGGGAAAAGCTTGGAGGGGAACTCACTACCACCACCTCTGTCCACAGCAGAGTCTGTTGGCTACCCAGCTATACAGCCATGTTTGGCAAATTGAAGAGGATGTTTATCCCCCAACCTCCAGCAGCCCCGGTCTCTGCTCCAGCCTTGGCCTCTGCCTCAGCCGCGGCCTCTGCCCCAGCCGCGGTCCCTGCCCCAGCCGCGGACCCTGCCCCAGCCGCGGCCCCTATTCCAGCCCCGGCCCCAGCTCCTGCACCTGCTAAGGAACATAAGCCTGCAGATAAAGAAAATGGGGCCAAGAAAGAGGATAAACCAGCAGAGCCTGCACATAACCCAGCCCCGGCTTCAGCCACTTCTCCAGCATCTGCTGCGGCTCCAGCTGCAGCCCCAGCCGCTACCCCAGCCAACCCTGGCCAGGAGGAAGCAGAGGGAGAAGAAgttccccctcctccaccacctcctatAGTGGTAAATAGGTACTCTGATGATCAGCTCCGGGTCATAgtgaagaggatgagagagagaacagaaatatACAGAGAGAAGCTCATAGACCCACACGCATCCTCACCTGAATTCAGCCCTCCAGTCACTCCCATTTATCGAAAAAAGGATTATGAAATATTAATGAACGAGAGGCTAATAAAAGAAGAGCAAGATAGGATAAAGAAAGAAGGGGAAGACTTAAAAAagaaagaggaggcagagaagaaAAAGCAGGAGATGGCGGAGAAGAAAGCGGCAGAGCAAAAAGCGAAAGATGAAGCAAAAGCATCGGAGCCTGTGGTCAAACCAACTGTTGGCCAGGAAGTTGCCGCCTTCCTTGACAGGAGGCTAAAACCTATCGAGGATGCGATGGACTCAGTGCTGCCATCCACCATCGATCCATTCTCAGatcACACGTACATCGCGTGGCTCACTCTGGTGACTCTGGCCTTCAACTACAACACCTGGTTCATGACGGCTCGTCTGTGTTTCCCCTACCACACCCCGGAGTGGATCCCTTACTGGATAACCATGGACCTTGTGGCTGATTTCATCTATCTCATTGACTCAATCTTCTTCCAGGCCCGCAAGCAGTTCGTCAAAGGAGGGGACATCATTAAAGACAGGATTATAACCAAAGCGTACTACAGAAACTCTGAGAGATTTAAGATGGACATGATAGCAATGGCACCCATAGACTTGCTATGCTTCCATTTCGGGTACAAATCCATCTTCAGATTCAATCGAATGATAAAGGTGGACACATTCTTTGAGTTCAGTGATCGTCTGGAGAGCCTCATGTCCAAGGCCTACATTTGGAGAGTGGTCCGCACCATTGGCTACCTGCTCTTCATGCTCCACCTCAACGCCTGCGCCTACTATGTGGCCTCGGCCTACCAGGGCATCGGCAAGACCACATGGGTCTACACTGGCAAAGGCAGCGCttaCCTGAGCAGTTTCTTCTATGCGGAGAAATCCCTGCTGATGATCGCAGAGTTGCCATTTCCCGACACCTTATTCGGCCAGTTGTTTCAGATGGCCAACTATTTTTTCGGCGCCTTCTTTTTGTCCATCTTTCTTGGCCAGATGAGAGATGTCATTGGGGCAGCCACCACAGGCCAGACCTACTTTCGTTCCTCCATGGACAACACTGTGTATTATATGGTGTCAAATAACATCCCCAAACTGTGCCAGAACAGAATACGCACCTGGTACAACTACACCTGGGACGCCCAGGGCATGCTGGATGAGTCTGAGCTGCTGGAGCAGATGCCTCTCGTCATGAGGACAGCCATTGCTGTTGACATTAACCTGGCTACCTTCCAGAAAATTGATCTATTTAAGGGTTGTGATAACCAGATGTTGGTAGACATGTTGCTGAGGCTTAAGTCTATTATATATCTACCTGGGGACTTTGtggtgcagaagGGAGATATTGGTAAAGAGATGTACATAATCAAGTCTGGAGCAGTACAGGTGGTTGGTGGACCAGATAACTCCATCGTGTTCGTTACACTGAAGGCCGGCTGTGTGTTTGGAGAAATCAGTCTGTTGCAATCGTCTAAAGATGGCGGGAACAGGAGGACAGCTAATGTCAAAGCTCACGGCTTTGCTAACCTGTCCGTCCTGGAAAAGAAGGATCTCTTTGAAATTCTGGTCCACTACCCAATGGCTCAGAAGGTTCTGGCCAGGAAAGGAAAGAAACTGATGAAGGCTAAGGGTCCAGCTGCTGCTAAGGCTGTTGAAGATAAAAAGAAAGGACTGGCGCTGTTCGGACCCAAACCCCCCACTCCTAAAATGCTGCGTGTCTTTGGGGGCGACAAAGGCTTTTTGGAGAAACTCAAGCATGCCACTCAAAATCATAAAGATTGAGAATATCAAACTGCATCGTTTCTCATATGTATTACTTTTGTGGTGAATTTACAGTGCATTATTGTTCAATCCCCTCTTTACTCACAGCTGAATGAacagtatgtgagtgtgtgtacagaaCACTATTTTGAGGGATTCGTGTAAGAGGGATACAACTACCCTCTCGCATACTATCCTTTAGAATTGTTTAATCTTTCAAAAACTTTATTAAGATGTGCAATAATTAAAGAAGTGGAAAAAACGAATATTTCTAGAAGTGTTTTGATCATTTTTCTTTTCATATCAATTATAAATTATATTTCAGGTTtagaaactgttttttttttttttttggaccaATCACGATTTGTATTTGCCGATACACAACTCATGTAGTTTGTGGTGGCAGTTATGGATGCAGTGCCAATCAAAGGATTTATTTTTCTGTGTAACGGGTAACAGTTTAGCTACGAAACAAGCTACTTAAGTGACATTTAATACGATCTGTCTGCTTTGTAAGATACACATTTacctaaataaatacattctcaTTTACTAACAACTGCATCAGTTCCATAGTATCCTATTCTTCTTCGTGAtctattgtgtgttgtgttgaataGTAGTTGAATGTGAAAGCAAGCCAACCATGGAGATCTCAGTCCAATAATCCCCTTATCCAGGGTGGGACATTGTGAAGTCTTAGCTAGGAAAGGGGCGGGACATTGTGATGTTTAATTAAGTAAGtggtctcctctctgtatctgtccccAGCTTTAACACACAGTAAGCAGTGAAGCTAAGAATAACCCaaatagggcctcccgggtggcgcagtggttaagggcgc

Function

NR:

description
cyclic nucleotide-gated cation channel beta-3-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036935220.1 False 3350 mRNA 0.47 18 24497954 24532036
XM_036935221.1 True 3348 mRNA 0.47 18 24497954 24532037

Neighbor

gene id symbol gene type direction distance location
LOC110535521 mmp16 coding upstream 130892 24295489 ~ 24367062 (+)
steap2 steap2 coding upstream 299443 24189141 ~ 24198511 (+)
LOC110535520 LOC106578523 coding upstream 309186 24173096 ~ 24188768 (+)
dtx3l1 LOC106578522 coding upstream 348283 24146476 ~ 24149671 (+)
c1ql3a c1ql3 coding upstream 394244 24097090 ~ 24103710 (+)
cngb3.1 LOC106578566 coding downstream 1042 24533079 ~ 24566994 (+)
rmdn1 rmdn1 coding downstream 59086 24591123 ~ 24599218 (+)
LOC118937338 NA coding downstream 200333 24732370 ~ 24746682 (+)
LOC110535530 LOC106578529 coding downstream 265209 24797246 ~ 24827022 (+)
pfkpa LOC106578535 coding downstream 662416 25194453 ~ 25222665 (+)
G957964 NA non-coding upstream 29289 24468210 ~ 24468665 (+)
G957920 NA non-coding upstream 75255 24422416 ~ 24422699 (+)
G957740 NA non-coding upstream 170879 24272570 ~ 24327075 (+)
G957767 NA non-coding upstream 178409 24318887 ~ 24319545 (+)
G957748 NA non-coding upstream 209456 24285508 ~ 24288498 (+)
G958002 NA non-coding downstream 7059 24539096 ~ 24539325 (+)
G958007 NA non-coding downstream 12999 24545036 ~ 24545304 (+)
G958008 NA non-coding downstream 13683 24545720 ~ 24545989 (+)
G958080 NA non-coding downstream 154020 24686057 ~ 24686281 (+)
G958081 LOC106573797 non-coding downstream 154600 24686637 ~ 24687109 (+)
G956797 NA other upstream 721109 23775772 ~ 23776845 (+)
G956728 LOC106613263 other upstream 832024 23665288 ~ 23665930 (+)
tlcd4a LOC106570700 other upstream 1756707 22712577 ~ 22741263 (+)
phldb2b tcpe other upstream 4728601 19740565 ~ 19799150 (+)
G951511 NA other upstream 5370869 19126665 ~ 19127085 (+)
G957942 NA other downstream 68434 24600471 ~ 24601653 (+)
G958300 idi1 other downstream 262563 24794600 ~ 24795736 (+)
G960696 LOC106583976 other downstream 2181588 26713625 ~ 26797294 (+)
G960816 armc4 other downstream 2396639 26928676 ~ 26929027 (+)
bambia LOC106578551 other downstream 2876965 27409002 ~ 27412913 (+)

Expression


Co-expression Network