cngb3.1 (LOC106578566)


Basic Information

Item Value
gene id cngb3.1
gene name LOC106578566
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 24533079 ~ 24566994 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021622349.2
ATGTTTGGCAAGCTCAAAGCACTGTTCTCGGTGCCCGAGCCACCTCCGAAGCCGGATGCCACTGCTGCTCCTGCCACGGCTCCTGCCCCCGCACCAGCTCCCGCTCCTGCCCCAGCACCTCCAGCAAAGGAAGAGGAGAAGCCTGCAGAGAAAAAGgatgaggagaagaaagaggaagaaCCTAAGAAGGAGGAGGCTAAACCAGCAGATCctgccccagctccagccccagctccagcccctgcTCCAGCCCCTGCCCCTACCCCAGCCCCGGCCGCTGCCCCAGCACCTGCACCTGCAGAAGGGGACAAACCCGCTGATGGGGCTGAAGGTGAAGAGCagccccctcctccacctccgccGGTTGTGTACAGCAGGTATGCAGATGACACACTCCGGGAAGTTGTCAAACGGCTAAGAGACCGGACAAATACCTACAAAGAGAGAGCCATTGACCCCTATGCTACCACACCTGAAATCAGCCCCCCTAtcaCCCCGGTCTTGAGGAAATCAGACTACCTGAGGaagaaggaggcagagaggataaAAGCAGAGGAGGATGCAATAAAAAAAGCAGAAGCAGATGCGATAAAGGCAGTAGAGATGGCAAAGAAAAAGGAGGAGAAAGCAAAGGCAGATGCGGAGAAGAAGGAGGCAGAGCGGCTAAAgaaacaggaggaggagcaggcagCTAGAGATGCATCCATTTGTCCCATGATCAGCTTTTCCTTCATTGACACTACGCTCCAACCAGTTGAAGACGCCATGGACTCAGTGCTTGGTAACACCATAGATCCATTCACAGatCGCAAGTATATTGCTTGGATAACACTTGTAAGTTTGGCATTCAACTACAACGCTTGGTTTACACCGGTTCGTTTGGTCTTTCCCATCCACACTCCAGTGTCCGTTCCTTTCTGGATATTTGCTGACATTCTTGCAGACAGTGTCAATGTCATAGATATCGTCCTCTGGCAACCCCGACTGCAGTTTGTGAAAGGAGGAGACATTATTAAAGACCGGACTGTGACGAAGCTACATTATCGAGAGATTTCGAGGTTTAACTTGGATATGATCAGCATCATCCCATTCGAACTGCTCGGTATCCCGTTTGGATTCTCTGCTTTATACAGACTCAACCGTCTACTGAGGATAGACATGTTTTTCGAGTTCAGCGATCGGCTTGAGAGTATCATGGCCAAGGCTTACATCTGGAGAGTTGGTCGAACTACTGGCTACCTGCTGTACATGCTCCATCTCAATGCCTGTTTCTACTATGTGGCGTCAGTGTACCTTGGCATCGGCACCTCCAAATGGGTCTACGATGGAGATGGAACCGCGTACCTGCGTTGTTATTACTTCGCTGTTCGTAGTCTGATCAACATCGGGGGTCTTCCTGAGCCTGGCACTGTGTTTGAGATCTGTTTCCAGATGACCAACTTCTTTACTGGTGTCTTTGTGTTCTCCAGTTTGATTGGACAGATGAGAGATGTCATCGGGGCTGCCACGCAGGGCCAGACATATTTCCGGGCCTCCATGGACGGCTGTGTGGAATACATGAACACTTTCACCATCCCCGACTTGGTGCAGAACAGAGTACGCACCTGGTACAACTACACCTGGGACGCCCAGGGAATGCTGGaCGAGTCTGTACTGCTGGAGCAGATGCCTCTTGTAATGAGAACAGCCATTGGTGTGGATGTAAACTTTGCCACCTTCGATAAAATTGCTCTTTTTCAGGGCTGTGATAAGCAGATGTTGGTAGACATGTTGCTGAGGCTCAAGTCTATTATATATCTACCTGGGGAttttgtggtgaagaagGGTGACATTGGTAAAGAGATGTACATCATAAAGGGTGGAGAGGTGCAGGTGGTTGGTGGACCAGATAACTCCATTGTGTTTGTGACGCTGAAGGCCGGCTGTGTGTTTGGAGAAATCAGTCTGCTACAGTCTGCCAAAGATGGCGGGAACAGAAGGACTGCTAACGTAAAAGCTCATGGCTTCGTCAACCTTTTTGTCCTGGATAAGAAAGACCTGGTTGACATCTTGGTCCACTACCCAAATTCCCAGAGAGTGCTGGCCAAGAAAGGAAGGAAACTGATGAAGGCGAAGGGTCCAGCTGGTGCTAAGGGTGAGGTTGACAAGACGAAAGGAATGGCGCTGTTTGGACCCAAACCCCCCACTCCTAAAATGGCGCGCATCTTTGGAGGCTTTGGCAAAGGAGGCTTCTTGGAGAAACTCAAGGCTGCACAAGCGAAGGAGCAGCAGGGGAAGTAAAAGAGTAGAGGGTGAGACATCTGATCCTTTACTTGGATCCGCCATCTTTGTTTATATTCCTCTACTGCCCTGGAGTGTATTCATTAGTACACACCGCAGCAAAAACGTTTAGCAATGTGTTAGAAATATTTTTGTTTCGATTGATCTCGGAACCAAATTTTGCGTGCGTTGTTGACAATTTATTATGCTTTGATTAGTCAGTGAGTTCTGATCTCTGTGCTGTTAGCCAATATGATGGAGAATACCAGCATGTTAAACTTTGTACACTGTAAATAGTACTTTTCATAAAAGTATTAAAATGTTTACTACAACTACAGTGTCTTAT

Function

NR:

description
cyclic nucleotide-gated cation channel beta-3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021622349.2 True 2605 mRNA 0.49 18 24533079 24566994

Neighbor

gene id symbol gene type direction distance location
LOC110535524 LOC106578570 coding upstream 1042 24497954 ~ 24532037 (+)
LOC110535521 mmp16 coding upstream 166017 24295489 ~ 24367062 (+)
steap2 steap2 coding upstream 334568 24189141 ~ 24198511 (+)
LOC110535520 LOC106578523 coding upstream 344311 24173096 ~ 24188768 (+)
dtx3l1 LOC106578522 coding upstream 383408 24146476 ~ 24149671 (+)
rmdn1 rmdn1 coding downstream 24129 24591123 ~ 24599218 (+)
LOC118937338 NA coding downstream 165376 24732370 ~ 24746682 (+)
LOC110535530 LOC106578529 coding downstream 230252 24797246 ~ 24827022 (+)
pfkpa LOC106578535 coding downstream 627459 25194453 ~ 25222665 (+)
fzd8a LOC106578536 coding downstream 1161067 25728061 ~ 25730806 (+)
G957964 NA non-coding upstream 64414 24468210 ~ 24468665 (+)
G957920 NA non-coding upstream 110380 24422416 ~ 24422699 (+)
G957740 NA non-coding upstream 206004 24272570 ~ 24327075 (+)
G958080 NA non-coding downstream 119063 24686057 ~ 24686281 (+)
G958081 LOC106573797 non-coding downstream 119643 24686637 ~ 24687109 (+)
G958304 NA non-coding downstream 190159 24757153 ~ 24757640 (+)
G958345 NA non-coding downstream 284561 24851555 ~ 24851762 (+)
G958347 NA non-coding downstream 286238 24853232 ~ 24853618 (+)
G956797 NA other upstream 756234 23775772 ~ 23776845 (+)
G956728 LOC106613263 other upstream 867149 23665288 ~ 23665930 (+)
tlcd4a LOC106570700 other upstream 1791832 22712577 ~ 22741263 (+)
phldb2b tcpe other upstream 4763726 19740565 ~ 19799150 (+)
G951511 NA other upstream 5405994 19126665 ~ 19127085 (+)
G957942 NA other downstream 33477 24600471 ~ 24601653 (+)
G958300 idi1 other downstream 227606 24794600 ~ 24795736 (+)
G960696 LOC106583976 other downstream 2146631 26713625 ~ 26797294 (+)
G960816 armc4 other downstream 2361682 26928676 ~ 26929027 (+)
bambia LOC106578551 other downstream 2842008 27409002 ~ 27412913 (+)

Expression


Co-expression Network