rmdn1 (rmdn1)


Basic Information

Item Value
gene id rmdn1
gene name rmdn1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 24591123 ~ 24599218 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620576.2
TGATTTGAAGTTCGTGTTGTTTCTCTACGTTTTCGCTAATTGCGATCTTGAATGACCCACGTTTGTATCGTGTTCTTACATTTCAAAGTCCAGGCTGTTCGGCTCAGATTTAGAAGTGATCATTCAGCTCTTGACTTGATTAGGGAGAAGGATGGCAGGAGCAACTTTCATGCGATTTGCTGCCCGGACTGTGCTATCGGCACCTGCTTGTAAAGCCGTCAAGATCAGAGGATATCATCGACAATACTTGACTACTTTCAGGAGCAATACCTCAACTATTAACGGTGGAAGAACTGCATTCTTGCTCACCTTACCAGTACTATCTTATCTAGGCGTGGAAGCCTACAGGAGGGTGCAGAGTGCAACTGTGGTCCATGCTCTGGAAAAAGCTGAAGAGGCTGTGGAACAAGCAGACTACCTGTATAGCTGTGGGGAGACAGAGAAACTCTACCAGCTTCTGCTACAGTATAAGGACAGTGATGATGCGGAGTTCCTGTGGAGGCTGGCGCGGGCATCTCGTGACCTCTCCCTCCTCGCTCACATTGCTGCTGACGAGAAGAAGAGGCTGACCTTTGAGGCGTTTGAATACGCCAAGAAGGCCCTGGAGAAAAATGAGGCCTGCTTCGCAGCACACAAATGGTATGCAGTGTGCCTCAGTGACATAGGCGATTACGAGGGGGTCAAAGTAAAAATAGGAAATTCTTACATCATTAAAGAACATTTGCAGAGGGCTATCGAGCTAAATCCTAAAGATGCCACATCTATCCATATCTTGGGTTATTGGTGTTTTGCCTTCGCTGAGTTGGCGTGGTATCAACGTAAAGTGGCAGCCATGATCTTCGCCTCTCCTCCCACTGCTACATACGAAGAGGCTTTGGCTTTCTTCCTGAAAGCTGAAGAAGTGGACCCAAACTTCTACAGTAAGAATCTACTTATGCTGGGGAAGTCCTACATGTCATTGAAGGACGAGGGGAATGCTGTGCTCTGGCTGAGAAAGGCACGGGACTACCCCCCTCACACAGAGGAAGACAAGGAGGTCCATAAAGAAGCCCTTGACCTTCTAAAGAAGCTCAGTGCATAAGATGACCTAGTCACACGGAGGCAAGAGTGCACTGTGTTGATAATAGGTGTAATCTATGTCTATCTACTATATGCATATTTTTGTTCCTAACGCAAGAGTGTACATAGGCTATAATGTACGGCCTTAACAGGAAATGATACATGCTTTTCCACTAACCTGTGTATAGTGATTTACAGATGCTGTGATTTAACTTTAATTAAACGTTATTTTAATTTAA
>XR_002475265.2
TGATTTGAAGTTCGTGTTGTTTCTCTACGTTTTCGCTAATTGCGATCTTGAATGACCCACGTTTGTATCGTGTTCTTACATTTCAAAGTCCAGGCTGTTCGGCTCAGATTTAGAAGTGATCATTCAGCTCTTGACTTGATTAGGGAGAAGGATGGCAGGAGCAACTTTCATGCGATTTGCTGCCCGGACTGTGCTATCGGCACCTGCTTGTAAAGCCGTCAAGATCAGAGGATATCATCGACAATACTTGACTACTTTCAGGAGCAATACCTCAACTATTAACGGTGGAAGAACTGCATTCTTGCTCACCTTACCAGTACTATCTTATCTAGGCGTGGAAGCCTACAGGAGGGTGCAGAGTGCAACTGTGGTCCATGCTCTGGAAAAAGCTGAAGAGGCTGTGGAACAAGCAGACTACCTGTATAGCTGTGGGGAGACAGAGAAACTCTACCAGCTTCTGCTACAGTATAAGGACAGTGATGATGCGGAGTTCCTGTGGAGGCTGGCGCGGGCATCTCGTGACCTCTCCCTCCTCGCTCACATTGCTGCTGACGAGAAGAAGAGGCTGACCTTTGAGGCGTTTGAATACGCCAAGAAGGCCCTGGAGAAAAATGAGGCCTGCTTCGCAGCACACAAATGGTATGCAGTGTGCCTCAGTGACATAGGCGATTACGAGGGGGTCAAAGTAAAAATAGGAAATTCTTACATCATTAAAGAACATTTGCAGAGGGCTATCGAGCTAAATCCTAAAGATGCCACATCTATCCATATCTTGGGTTATTGGTGTTTTGCCTTCGCTGAGTTGGCGTGGTATCAACGTAAAGTGGCAGCCATGATCTTCGCCTCTCCTCCCACTGCTACATACGAAGAGTGGACCCAAACTTCTACAGTAAGAATCTACTTATGCTGGGGAAGTCCTACATGTCATTGAAGGACGAGGGGAATGCTGTGCTCTGGCTGAGAAAGGCACGGGACTACCCCCCTCACACAGAGGAAGACAAGGAGGTCCATAAAGAAGCCCTTGACCTTCTAAAGAAGCTCAGTGCATAAGATGACCTAGTCACACGGAGGCAAGAGTGCACTGTGTTGATAATAGGTGTAATCTATGTCTATCTACTATATGCATATTTTTGTTCCTAACGCAAGAGTGTACATAGGCTATAATGTACGGCCTTAACAGGAAATGATACATGCTTTTCCACTAACCTGTGTATAGTGATTTACAGATGCTGTGATTTAACTTTAATTAAACGTTATTTTAATTTAA

Function

symbol description
rmdn1 Predicted to enable microtubule binding activity. Predicted to be active in cytoplasm; mitotic spindle pole; and spindle microtubule. Orthologous to human RMDN1 (regulator of microtubule dynamics 1).

NR:

description
regulator of microtubule dynamics protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620576.2 False 1298 mRNA 0.46 10 24591123 24599218
XR_002475265.2 True 1267 mRNA 0.46 9 24591123 24599218

Neighbor

gene id symbol gene type direction distance location
cngb3.1 LOC106578566 coding upstream 24129 24533079 ~ 24566994 (+)
LOC110535524 LOC106578570 coding upstream 59086 24497954 ~ 24532037 (+)
LOC110535521 mmp16 coding upstream 224061 24295489 ~ 24367062 (+)
steap2 steap2 coding upstream 392612 24189141 ~ 24198511 (+)
LOC110535520 LOC106578523 coding upstream 402355 24173096 ~ 24188768 (+)
LOC118937338 NA coding downstream 133152 24732370 ~ 24746682 (+)
LOC110535530 LOC106578529 coding downstream 198028 24797246 ~ 24827022 (+)
pfkpa LOC106578535 coding downstream 595235 25194453 ~ 25222665 (+)
fzd8a LOC106578536 coding downstream 1128843 25728061 ~ 25730806 (+)
LOC110536590 cul2 coding downstream 1235755 25834973 ~ 25856195 (+)
G958008 NA non-coding upstream 45134 24545720 ~ 24545989 (+)
G958007 NA non-coding upstream 45819 24545036 ~ 24545304 (+)
G958002 NA non-coding upstream 51798 24539096 ~ 24539325 (+)
G957964 NA non-coding upstream 122458 24468210 ~ 24468665 (+)
G957920 NA non-coding upstream 168424 24422416 ~ 24422699 (+)
G958080 NA non-coding downstream 86839 24686057 ~ 24686281 (+)
G958081 LOC106573797 non-coding downstream 87419 24686637 ~ 24687109 (+)
G958304 NA non-coding downstream 157935 24757153 ~ 24757640 (+)
G958345 NA non-coding downstream 252337 24851555 ~ 24851762 (+)
G958347 NA non-coding downstream 254014 24853232 ~ 24853618 (+)
G956797 NA other upstream 814278 23775772 ~ 23776845 (+)
G956728 LOC106613263 other upstream 925193 23665288 ~ 23665930 (+)
tlcd4a LOC106570700 other upstream 1849876 22712577 ~ 22741263 (+)
phldb2b tcpe other upstream 4821770 19740565 ~ 19799150 (+)
G951511 NA other upstream 5464038 19126665 ~ 19127085 (+)
G957942 NA other downstream 1253 24600471 ~ 24601653 (+)
G958300 idi1 other downstream 195382 24794600 ~ 24795736 (+)
G960696 LOC106583976 other downstream 2114407 26713625 ~ 26797294 (+)
G960816 armc4 other downstream 2329458 26928676 ~ 26929027 (+)
bambia LOC106578551 other downstream 2809784 27409002 ~ 27412913 (+)

Expression


Co-expression Network