LOC118937338


Basic Information

Item Value
gene id LOC118937338
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 24732370 ~ 24746682 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005034603.1
GTCAATAGTAAATCCCAGTGGATTAATACCTGTGATTACTATTAATATAGGGTGAGTCCCGGAAGGTAAACTCACGCAGGCTGGAACCTGCGAAGGGTGAGTCCTAGGGGGTAAATACCAGCGGGGTTGGTTCCCTGTATAGCTACAACGGGGTGAGAGCCTAGTTGTATTGGCCATAAAAGTGTGAATGGAAGGTTAGTTGTGTGCCCTGTTGGGGTGGTGAACCATGGCAGATTAtgtggaaataggaagacaaATGTGAATAATTTTGGTGAAGTATTATCAATAATAGGGATATTGGAGGAGATACGGCACAAAGACATTAAGAAATCCGTATTCTCCAGTAATAGATTCGCAGACGTTTCTGGTATCGGTTTTTGAATGATTATCCGGGGAAGTGTGTAGTGCTATCTTAGGAAATAGTGAATAGATGGTGTGTATAATCGACAGGAGTTAAGGAATCTAAGATACCCTGAATACCGTCGGGTATCTATTGATATGGCGACAAACGAACCCGTTTCTCCCTGTAATATAGAGATAGCGGAATAGAATAAAGCTATGGAGGTGCTAAAAGAAGCACACGAGCATTCTACCAATTCGGCTGGAATATGGGAAAAATTTAGCAAATTAGATAAAATTGGACAATATTTTCCTTCTGACGGtgaattcaaatcaaataaagaATGCAGGGAGGCAATTATGACTTGGCACAAGGACATAAAAACAGAATCAAAAACGTAATATACCCGTGTTTTAATGTCAGCATTCTATCAACAGAAAATGCGTAAACCCATAAAGTGTAACACCAGTACTTTACTACAGAAGGCCTGGGAACGGGAGTGTATTGAAAAAAAATTGCGCTTCTGCTTTAATGACGGGGTTGAACCCTCAAAACAGTAATTGCGGGGGTAGTAGATTTAATTCAAGACAATGTTTTGAGAGTGGAATATGACTCCGCTCACCTTGCAGACGTGCCAGGGGTTAATAAGGCCATAGAGGAAATGGCTAACAACAGTTTCAATGGCCAGGATAAAACTAAGAAACGTAGCGAAAAAAAATCAAAACGTAAGGAGACAGCTCCCTGTTTTAGATGTGGGACTATCGGGCATTGGAAGAATGAGTTTAAGGTGATACTGGAACCTAGTGCATTAGCATATCACTTTATGACGACTCATGTGACATGGATTGGTTATTGGTAACTGGGGGACCAATGGGAGGACAGAGGATGCTGTTATTCAAATATTACAAATTATGTTTGTCAGGAAATAACCCATGTGTTACAGTGTGCATATCCTCAGTTATATCTTGGTTCCACCTAAGGGCACGGGCTGAATTCTGGAGATTGAGTGTACATCAAGAGACATCAGGCGGGGGTGTTGAGCATTGATTTGAGAGACACACTACTTCGAACAGTACCTGCAGTGGTTAAGATCGTCATGTCTCTCCTTGGGGGGTGCATAGTTTGCACGTGAAGTGAGGTCCAACTGCATAATGGGTCCCTCCATGCTCTCCCTCGACTCCCATGAACACCTGTGTCCCCCCATCCCACTCACGCGCCCCTTCACCTACTCCTCACCCAATCTTGGCACCAAGgatccaattcgggaaagtcgcATTCCtagtcgtaatgctggtgagttaccgccactgatatccaaaagttatttccggctgcaAAGTTGCTTCGGAGCTAGAAGCAGATCTGCCATATCTGTTGGCGCCATCTTCATAAATATAGGAGCTGGGTCGAATCAAGGTGCCGAAGACAGGCTCCTTCATGACCAGTATCTGTGACGAGACGAGCCTGGAGCTGATCTACGCTGCAATGCCCAACAGGCGTTGGCAAACACCTCCGAAGTGACAAAAGATGGAGGACAGAAGAGCTGCTTTTGTCATGGAGTCCTCTTATTGAAAGACTGGTTGATACTGATGTATGAATTGGGAGAGAGCTTTCACTCAGCATTAAAATTGAACTAGACGCA

Function

NR:

description
PREDICTED: uncharacterized protein LOC106594372 isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005034603.1 True 1982 mRNA 0.44 4 24732370 24746682

Neighbor

gene id symbol gene type direction distance location
rmdn1 rmdn1 coding upstream 133152 24591123 ~ 24599218 (+)
cngb3.1 LOC106578566 coding upstream 165376 24533079 ~ 24566994 (+)
LOC110535524 LOC106578570 coding upstream 200333 24497954 ~ 24532037 (+)
LOC110535521 mmp16 coding upstream 365308 24295489 ~ 24367062 (+)
steap2 steap2 coding upstream 533859 24189141 ~ 24198511 (+)
LOC110535530 LOC106578529 coding downstream 50564 24797246 ~ 24827022 (+)
pfkpa LOC106578535 coding downstream 447771 25194453 ~ 25222665 (+)
fzd8a LOC106578536 coding downstream 981379 25728061 ~ 25730806 (+)
LOC110536590 cul2 coding downstream 1088291 25834973 ~ 25856195 (+)
LOC110535542 LOC106578541 coding downstream 1112163 25858845 ~ 26401631 (+)
G958081 LOC106573797 non-coding upstream 45261 24686637 ~ 24687109 (+)
G958080 NA non-coding upstream 46089 24686057 ~ 24686281 (+)
G958008 NA non-coding upstream 186381 24545720 ~ 24545989 (+)
G958007 NA non-coding upstream 187066 24545036 ~ 24545304 (+)
G958002 NA non-coding upstream 193045 24539096 ~ 24539325 (+)
G958304 NA non-coding downstream 10471 24757153 ~ 24757640 (+)
G958345 NA non-coding downstream 104873 24851555 ~ 24851762 (+)
G958347 NA non-coding downstream 106550 24853232 ~ 24853618 (+)
G958350 NA non-coding downstream 112179 24858861 ~ 24859069 (+)
G958363 adarb2 non-coding downstream 144599 24891281 ~ 24891985 (+)
G957942 NA other upstream 130717 24600471 ~ 24601653 (+)
G956797 NA other upstream 955525 23775772 ~ 23776845 (+)
G956728 LOC106613263 other upstream 1066440 23665288 ~ 23665930 (+)
tlcd4a LOC106570700 other upstream 1991123 22712577 ~ 22741263 (+)
phldb2b tcpe other upstream 4963017 19740565 ~ 19799150 (+)
G958300 idi1 other downstream 47918 24794600 ~ 24795736 (+)
G960696 LOC106583976 other downstream 1966943 26713625 ~ 26797294 (+)
G960816 armc4 other downstream 2181994 26928676 ~ 26929027 (+)
bambia LOC106578551 other downstream 2662320 27409002 ~ 27412913 (+)
mtpap LOC106578552 other downstream 3016306 27739381 ~ 27765414 (+)

Expression


Co-expression Network