fzd8a (LOC106578536)


Basic Information

Item Value
gene id fzd8a
gene name LOC106578536
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 25728061 ~ 25730806 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620593.2
ATAGAACATAGAGCACACACAACGAATGTAGCCACTGCTTTTCGAGAAACAGTAGCCACGATTTTTAAACTTCTATAATCGTTTTAAACGGAGCATGCAAACCAATTCAGGGGAAAGAGGCCTGGTCGAGGATAAGCTACAGGATAACCATAgcaccctttttttttttacaagggaATAAAGCCGGGTGTTCTGCATCTCTCGCTTCTCCTCAGTCCTCAGCCATCTTGACTGCTCCTGCTCGCCTGAAGGCTATAATTTCTCCTCCCGCTCCTCCTCTGAAAGTATACACGGTTTGCAAATTGCTTGCAACTCCGTGCCAAAAGAGTAAGCGAGATGGGTTCACTGTACACGATCTAATTAGACTGCGCAGGCTCTGGCAAGAGACAGGAGCAGGCAGAGGaggactactgtactgctgttttaTCAACAGAGGAGAGGGATCCGATAAAGGATGGAGTGCTACCTGTCGGGGATATACCTGCTTCTCGCACTTGCTATTTTACCGAGATCCAGCGGCACCACGGCGAAGGAGATCACCTGCCAAGAGATTGCCGTGCCTCTGTGCAAGGGGATCGGCTACAACTATACCTACATGCCCAACCAGTTCAATCACGACACCCAGGACGAGGCGGGTTTGGAGGTACACCAGTTCTGGCCTCTGGTTGAAATCCAGTGCTCGCCGGACCTCAAGTTCTTTCTCTGCAGCATGTACACTCCTATTTGCCTAGAGGACTATAAGAAACCACTGCCACCGTGCCGGAGCGTCTGCGAGAGAGCGAAGGCAGGCTGCGCGCCTCTTATGAGGCAGTATGGTTTTCCCTGGCCAGACAGAATGAAATGTGACTCGCTACCGGTTCAAGGCAATCCGGAGATGTTATGTATGGACTACAATAGGACTCACTCGACCACAGTATCACCGGTCCTTTCTAAGCCTACCAACTATCCGGGTAAGGCGTTTAACCCTAATAAAAACAACAAAGGACACAATCGACCCGGTGTTCCCGGTAAATACAAACCTCCGGCTCCCTGCGAGCCGCAGTGCAAGTGTCTTTCGCCCATGGTCCCGGTAAACACTGACCGGCATCACCTCTACAACCGGGTGAAGACCGGGCAGCTTTTAAACTGCGCCATGCCCTGCCATAACCCCTATTTTACGCAAGACGAGAGAACGTTTACCGCGTTCTGGATAGGTCTGTGGTCCGTGTTATGTTTTGTGTCCACGTTCGCAACGGTTGCCACTTTTCTCATAGACATGGAGCGGTTCAAGTACCCAGAGAGACCCATTATTTTCCTCTCTGCCTGTTACATGTTTGTTTCCATCGGGTATATCGTCAGACTAATCGCTGGACATGAAAAGGTGGCCTGCAACCGGGAGTATGACGTGGAACACATTCACTATGAGACCACTGGCCCTGCACTCTGTACTGTTGTGTTTCTTTTGATTTATTTCTTCGGCATGGCCAGTTCTATCTGGTGGGTCATTCTCTCTTTGACATGGTTCCTGGCTGCTGGGATGAAATGGGGAAACGAAGCCATAGCCAGTTACTCCCAATATTTTCACCTGGCTGCTTGGCTTATCCCTAGTATGAAATCTATTGCTGTGTTGGCCCTCAGCTCTGTGGACGGGGACTCAGTGGCTGGAATCTGCTACGTTGGCAATCAAAACTTGGACAATCTGAGAGGATTCGTGTTGGCCCCCCTGGTCATATATTTATTTATCGGCACTATGTTCCTCCTGGCCGGGTTTGTGTCCCTGTTCAGGATACGCAGCGTGATCAAACAGGGTGGCACCAAAACAGACAAGCTGGAGAAGTTGATGATAAGGATAGGGATATTCACCGTGTTGTACACCGTACCTGCCACTATTATAGTGGCCTGTTACTTCTACGAGCAGCACAACAGACAGAGTTGGGAGATCACCCACAACTGCTCCTGTCTGTCGGAGCATGAACTGAACAAGCCAGACTATGCTGTCTTCATGTTGAAGTACTTTATGTGCCTTCTGGTGGGCATCACGTCCGGCGTGTGGATATGGTCGGGGAAGACCCTGGAATCATGGAGGACCTTCTGCACGCGCTGCTGTTGGGGTAGCAAAGGCACCAGTGGCTCAATGTACAGTGACGTGAGCACAGGACTAACCTGGAGATCGGGTACTGCCAGCTCTGTATCTTGCCCAAAGCAGATGCCATTGTCACAGGTTTGAAGAGAAACCCATGGATGGACTAATGGGCTAATTGTTCCGGAGCTTGGCTAGCACTCTTTTTTTTATACCAGTTAGCATTTTAACATACTGTTGAAGAACTGGTTATAACATTGTAGCCTACCTGGCATTAACAAGAGTTCATTCCTACCCATTCATATGTATAGAACGAGCAGACTGGCATTTCTGGGCACATGGGCATTATGTGTTCTTTCTTTTTACGCAAATAAACATTTAGTTCATAACCCTATAAGGACTGATTGATAACCTTAACATAGTGCCAGTCAGATATAATTGTATAAATCAATCAGAACAATATCAAAGATGGTTTAAATTAAGCCTTAATAGTGCCCAAATATTATATGTGTCATTTTTTTAATTATAAAGATGTATTTATATAATGGTTATGTACAAACTTGTAAATTCTGTATAAAAGAAAATGTATAAGCTATTGTAAATGTGTATAAAGTGTAGAAGATGTCTCTTTGTAAAAAAGCAAATCTGACTTTTATTTtgacaataaaaataaacattttgataAAT

Function

NR:

description
frizzled-8-like

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0021529 spinal cord oligodendrocyte cell differentiation biological_process
GO:0008406 gonad development biological_process
GO:0021531 spinal cord radial glial cell differentiation biological_process
GO:0060898 eye field cell fate commitment involved in camera-type eye formation biological_process
GO:0021879 forebrain neuron differentiation biological_process
GO:0007409 axonogenesis biological_process
GO:0033077 T cell differentiation in thymus biological_process
GO:0001944 vasculature development biological_process
GO:0042995 cell projection cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0030165 PDZ domain binding molecular_function
GO:0042813 Wnt-activated receptor activity molecular_function
GO:0017147 Wnt-protein binding molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K02375 FZD5_8, fz2; frizzled 5/8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620593.2 True 2746 mRNA 0.46 1 25728061 25730806

Neighbor

gene id symbol gene type direction distance location
pfkpa LOC106578535 coding upstream 505396 25194453 ~ 25222665 (+)
LOC110535530 LOC106578529 coding upstream 901039 24797246 ~ 24827022 (+)
LOC118937338 NA coding upstream 981379 24732370 ~ 24746682 (+)
rmdn1 rmdn1 coding upstream 1128843 24591123 ~ 24599218 (+)
cngb3.1 LOC106578566 coding upstream 1161067 24533079 ~ 24566994 (+)
LOC110536590 cul2 coding downstream 104167 25834973 ~ 25856195 (+)
LOC110535542 LOC106578541 coding downstream 128039 25858845 ~ 26401631 (+)
LOC110536591 LOC106578544 coding downstream 887342 26618148 ~ 26700276 (+)
LOC118936350 NA coding downstream 982789 26713595 ~ 26751558 (+)
LOC110535543 LOC106590025 coding downstream 1029511 26760317 ~ 26809964 (+)
G959464 NA non-coding upstream 38358 25689336 ~ 25689703 (+)
G959463 NA non-coding upstream 39073 25688764 ~ 25688988 (+)
G959454 NA non-coding upstream 43789 25684049 ~ 25684272 (+)
G959401 NA non-coding upstream 82279 25645549 ~ 25645782 (+)
G959371 NA non-coding upstream 103384 25624431 ~ 25624677 (+)
G959510 NA non-coding downstream 38249 25769055 ~ 25769839 (+)
G959637 NA non-coding downstream 327347 26058153 ~ 26072686 (+)
G959659 NA non-coding downstream 366244 26097050 ~ 26154913 (+)
G959852 NA non-coding downstream 710136 26440942 ~ 26441293 (+)
G958300 idi1 other upstream 932325 24794600 ~ 24795736 (+)
G957942 NA other upstream 1126408 24600471 ~ 24601653 (+)
G956797 NA other upstream 1951216 23775772 ~ 23776845 (+)
G956728 LOC106613263 other upstream 2062131 23665288 ~ 23665930 (+)
tlcd4a LOC106570700 other upstream 2986814 22712577 ~ 22741263 (+)
G960696 LOC106583976 other downstream 982819 26713625 ~ 26797294 (+)
G960816 armc4 other downstream 1197870 26928676 ~ 26929027 (+)
bambia LOC106578551 other downstream 1678196 27409002 ~ 27412913 (+)
mtpap LOC106578552 other downstream 2032182 27739381 ~ 27765414 (+)
G961864 NA other downstream 2097940 27828746 ~ 27829177 (+)

Expression


Co-expression Network