Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110535540 |
| gene name | LOC106578540 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048575.1 |
| NCBI id | CM023229.2 |
| chromosome length | 86280908 |
| location | 25818677 ~ 25833045 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: cAMP-responsive element modulator-like isoform X4 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021620602.2 | False | 1822 | mRNA | 0.40 | 3 | 25818677 | 25823263 |
| XM_021620599.2 | False | 1967 | mRNA | 0.41 | 7 | 25818677 | 25832899 |
| XM_036935231.1 | False | 1675 | mRNA | 0.42 | 7 | 25818677 | 25833034 |
| XM_036935229.1 | False | 1677 | mRNA | 0.42 | 7 | 25818677 | 25833045 |
| XM_036935230.1 | False | 2090 | mRNA | 0.43 | 7 | 25818677 | 25833045 |
| XM_036935232.1 | False | 1901 | mRNA | 0.42 | 6 | 25818677 | 25833045 |
| TU1094307 | False | 1506 | TUCP | 0.42 | 3 | 25818777 | 25823047 |
| TU1094308 | False | 2976 | lncRNA | 0.38 | 3 | 25818777 | 25823047 |
| TU1094309 | True | 1454 | TUCP | 0.43 | 4 | 25818777 | 25823047 |
25,806,000
25,808,000
25,810,000
25,812,000
25,814,000
25,816,000
25,818,000
25,820,000
25,822,000
25,824,000
25,826,000
25,828,000
25,830,000
25,832,000
25,834,000
25,836,000
25,838,000
NC_048575.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| ccny | ccny | coding | downstream | 8891 | 25747146 ~ 25809786 (-) |
| LOC110535538 | LOC106578537 | coding | downstream | 74708 | 25739907 ~ 25743969 (-) |
| klf6a | LOC100196412 | coding | downstream | 482874 | 25328108 ~ 25335803 (-) |
| adarb2 | adarb2 | coding | downstream | 791229 | 24833828 ~ 25027448 (-) |
| idi1 | idi1 | coding | downstream | 1021247 | 24794584 ~ 24797430 (-) |
| LOC118937341 | NA | coding | upstream | 948566 | 26781584 ~ 26783782 (-) |
| LOC110536592 | LOC106578547 | coding | upstream | 1016858 | 26849903 ~ 26882829 (-) |
| odad2 | armc4 | coding | upstream | 1068941 | 26901986 ~ 26970548 (-) |
| LOC118937384 | armc4 | coding | upstream | 1178798 | 27011843 ~ 27032098 (-) |
| LOC110536594 | LOC106578549 | coding | upstream | 1227169 | 26998789 ~ 27352402 (-) |
| G959940 | NA | non-coding | downstream | 36760 | 25780755 ~ 25781917 (-) |
| G959465 | NA | non-coding | downstream | 129002 | 25689335 ~ 25689675 (-) |
| G959455 | NA | non-coding | downstream | 133459 | 25684980 ~ 25685218 (-) |
| G959399 | NA | non-coding | downstream | 174596 | 25643874 ~ 25644081 (-) |
| G960198 | NA | non-coding | upstream | 326742 | 26159787 ~ 26160489 (-) |
| G960280 | NA | non-coding | upstream | 447206 | 26280251 ~ 26280699 (-) |
| G960344 | LOC106578541 | non-coding | upstream | 524000 | 26357045 ~ 26401551 (-) |
| G960365 | NA | non-coding | upstream | 550042 | 26383087 ~ 26383725 (-) |
| G960461 | NA | non-coding | upstream | 662806 | 26495851 ~ 26496053 (-) |
| G959058 | NA | other | downstream | 444379 | 25373845 ~ 25374298 (-) |
| G958946 | NA | other | downstream | 638964 | 25179384 ~ 25179713 (-) |
| G958210 | LOC106578566 | other | downstream | 1251695 | 24556819 ~ 24566982 (-) |
| G958191 | NA | other | downstream | 1285133 | 24533004 ~ 24533544 (-) |
| G958140 | NA | other | downstream | 1364558 | 24453648 ~ 24454119 (-) |
| G961041 | LOC107713907 | other | upstream | 904129 | 26737174 ~ 26802826 (-) |
| G961930 | LOC106578555 | other | upstream | 2002921 | 27835966 ~ 27836768 (-) |
| G962982 | NA | other | upstream | 2888601 | 28721646 ~ 28722303 (-) |
| G966663 | LOC100194703 | other | upstream | 5557991 | 31391036 ~ 31391344 (-) |
| G959973 | NA | non-coding | upstream | 1130 | 25824177 ~ 25824383 (-) |
| G959974 | NA | non-coding | upstream | 2064 | 25825111 ~ 25825382 (-) |
