LOC110536590 (cul2)


Basic Information

Item Value
gene id LOC110536590
gene name cul2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 25834973 ~ 25856195 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036935233.1
TTATTAGATATACATGTTTTCATTGTGCACGATACACATTTACATTCTCTGATATTATTATATTAAATTCAAATAATTACTACTCCAATACAGTACACCCTACAGCTGATACAATGGTATTTTCCATAAGGTAGGGTAATGGAGAGCTGTAGCTAAGCGAAAGCGATCAAGCCTGTGACAGTGAAGAAACTTGACTTTTATTAACACATATATTAGTTAGAGCAACATTCTCCGAAAGTGACAAGCTAGCTTGAATGACGAATGGAtagctgcaagctagctagccaggCCTAAAAAAAAGTATTGCGGGATATCTAAGCCTGAAGAAGAAGCCATACGATGTCCTTGAAGCCGCGGGTGGTGGACTTTGATGAAACATGGAACAAGCTACTGACGACAATCAAGGCTGTGGTGATGCTTGATTATGTGGAGAGGGCCACATGGAACGACAGATTCTCTGACATCTATGCCTTGTGTGTTGCTTACCCAGAGCCTCTGGGTGAAAAGTTATACACAGAGACCAAGGTGTTCCTGGAGAACCATGTCAGACAATTGTACAAGAAAGTTCTGGAGTCGGAGGAGAAGGTTTTAGTTATGTACCACAGATACTGGGAGGAGTATAGCAAGGGAGCAGACTACATGGATTGCTTGTACAGGTACCTCAACACACAGTTCATCAAGAAGAACAAACTGACAGAGGCAGACTTGCAGTATGGCTATGGAGGGGTTGACATGAATGAACCACTTATGGAGATAGGAGAGCTAGCACTAGACATGTGGAGGAAACTGATGATCGAGCCCCTGCAAGCTGTCCTGATACGGATGCTGCTGAAAGAAGTCAAAAATGACCGGTGCGGTGAGGACCCTAATCAGAAAGTAATCCATGGGGTTATCAACTCCTTTGTTCATGTTGAACAGTACAAGAAAAAGTTTCCTCTCAAGTTTTATCAGGAAATCTTCGAAGGGCCTTTTCTGACGAAAACAGGAGAGTATTACAAACAGGAAGCCTCCAATTTACTGCAAGAGTCCAACTGCTCACAGTATATGGAAAAGGTTTTAGGACGGTTGAAAGACGAGGAGGTGCGATGTCGAAAGTACCTGCATCCCAGCTCCTACGCCAAAGTCATCCACGAATGCCAGCAGAGGATGGTGGCGGACCACCTGCAGTTCCTCCATGGGGAGTGTCAGAACATCATCCGCCAGGAGAAGAGAGACGGTCAGTCTGGTTACAGGAGCGACGACATGGCTAACATGTACACCCTGCTGCGAGCCGTGTCCAGTGGTTTACCTCACATGATCCAGGAGCTCCAGGTCCATATCCACGACGAGGGCATCCGAGCCACCAGTAACCTCTCTCAGGAAAACATGCCAACCCTGTTTGTGGAGTCCGTGTTGGAGGTTCACAGTAAATTTGTTCAGCTCATTAACACAGTGCTGAATGGGGATCAGCACTTCATGAGCGCACTTGATAAGGCTTTGACGTCAGTGGTTAACCACAGGGAGCCCAAATCCATCTGCAAAGCACCTGAACTGCTCGCCAAGTATTGTGACAATCTGCTGAAGAAGTCTGCAAAGGGAATGACAGAGAACGAGGTGGAAGACAAGCTGACCAGCTTCATTACCGTGTTCAAGTACATAGATGACAAGGACGTTTTTCAAAAGTTTTATGCAAGAATGTTAGCCAAGCGGTTAATACACGGGCTGTCTTTGTCTATGGACTCGGAAGAAGCCATGATCAACAAACTAAAGCAAGCGTGCGGCTACGAGTTCACAAGCAAGCTCCACAGAATGTACACAGACATGAGCGTCAGCGCAGACCTGAACAACAAATTCAACAACTTCATCAAGACCCAGGAATCACCGGTCGAACTGGGCATCAGCTTCCAGATCTACGTATTACAGGCAGGAGCCTGGCCCCTCACACACGTCCCCTCCTCTACCTTTGCCATCCCACAAGAGCTGGAGAAGAGTGTTCAGATGTTTGAGTTGTTCTATAATCAGCACTTCAGCGGGAGGAAGTTGACCTGGCTGCACTATCTctgcacagGTGAGGTGAAGATGAACTATCTCTCCAAGCCCTACGTTGCCATGGTGACCACCTACCAGATGGCGGTGCTGCTGGCGTTCAACAACAGTGAGACGGTAGGCTACAAGGAGCTCCAGGACTCCACCCAGATGAATGAGAAAGAGCTTCAGAAGACCATCAAGTCCCTGCTGGATGTCAAGATGCTCAACCACGACTCCcaaaaggtcaggggtcaggtgTCAGCAGCCACAGATTCACCTGGAGATCTGGAGTCAGCAGGGTCTTCTTTATTGGAGGAAATCGAGGCAGAGTCCACATTTTCACTAAATATGAGTTTCACCAGTAAAAGAACAAAGTTCAAGATCACAACGTCAATGCAGAAAGACACACCACAGGAGATGGAGCAGACGAGGAGTGCAGTGGACGAGGACCGCAAAATGTATTTACAAGCTGCTATCGTGAGAATCATGAAGGCACGCAAAGTGCTCAGACACAATGCCCTCATACAGGAGGTCATCAACCAGTCCAAAGCCAGATTTAACCCCAGTATCAGCATGATCAAGAAGTGCATTGAGGTGCTCATCGACAAGCAGTACATCGAGAGGAGCCAGAGCTCTGCAGACGAGTATAGCTACGTGGCGTAATGGTGTATAAGGCCCCTACCCCAACCAACTGCTGGCTAAGCAAAGAACGACAGAGGCCATTCTTCATTTATTTTTGGGCTGTCGCTGTCTCGCATGCTCCTatacggagggagggatgaagcAGGTCTGTGGGCCTCCATCTTGGAAACAAACAAAACTGTTCAACCCAGACAGCCACCGAGTCATGACACCCTCTGGCCCCCATCCCCCCCCTCATCTGATTTTATGCTGTTTACAACATCACCAGTGCCACGCACCCATTGCGTCAATGGAAAATGCCTGTAGGTATCTGAGCGCAAAGCTGATAATACATTTTTGGTCGACTTAGCCGAAAACAAAAAAAGAATGGGGGGAAAAAAGCGAGTGAGCTGTGACATTGACAAAAAATGTTAGAGACTAGACGCGGAAAACCATGCTTTCTTTTCTCACGTTTGcagttgtttttaaatgtatCGAAGTTTAAAAGAAATATTGTAATAAAACCG
>XM_036935235.1
TATTAGATATACATGTTTTCATTGTGCACGATACACATTTACATTCTCTGATATTATTATATTAAATTCAAATAATTACTACTCCAATACAGTACACCCTACAGCTGATACAATGGTATTTTCCATAAGGTAGGGTAATGGAGAGCTGTAGCTAAGCGAAAGCGATCAAGCCTGTGACAGTGAAGAAACTTGACTTTTATTAACACATATATTAGTTAGAGCCTGAAGAAGAAGCCATACGATGTCCTTGAAGCCGCGGGTGGTGGACTTTGATGAAACATGGAACAAGCTACTGACGACAATCAAGGCTGTGGTGATGCTTGATTATGTGGAGAGGGCCACATGGAACGACAGATTCTCTGACATCTATGCCTTGTGTGTTGCTTACCCAGAGCCTCTGGGTGAAAAGTTATACACAGAGACCAAGGTGTTCCTGGAGAACCATGTCAGACAATTGTACAAGAAAGTTCTGGAGTCGGAGGAGAAGGTTTTAGTTATGTACCACAGATACTGGGAGGAGTATAGCAAGGGAGCAGACTACATGGATTGCTTGTACAGGTACCTCAACACACAGTTCATCAAGAAGAACAAACTGACAGAGGCAGACTTGCAGTATGGCTATGGAGGGGTTGACATGAATGAACCACTTATGGAGATAGGAGAGCTAGCACTAGACATGTGGAGGAAACTGATGATCGAGCCCCTGCAAGCTGTCCTGATACGGATGCTGCTGAAAGAAGTCAAAAATGACCGGTGCGGTGAGGACCCTAATCAGAAAGTAATCCATGGGGTTATCAACTCCTTTGTTCATGTTGAACAGTACAAGAAAAAGTTTCCTCTCAAGTTTTATCAGGAAATCTTCGAAGGGCCTTTTCTGACGAAAACAGGAGAGTATTACAAACAGGAAGCCTCCAATTTACTGCAAGAGTCCAACTGCTCACAGTATATGGAAAAGGTTTTAGGACGGTTGAAAGACGAGGAGGTGCGATGTCGAAAGTACCTGCATCCCAGCTCCTACGCCAAAGTCATCCACGAATGCCAGCAGAGGATGGTGGCGGACCACCTGCAGTTCCTCCATGGGGAGTGTCAGAACATCATCCGCCAGGAGAAGAGAGACGACATGGCTAACATGTACACCCTGCTGCGAGCCGTGTCCAGTGGTTTACCTCACATGATCCAGGAGCTCCAGGTCCATATCCACGACGAGGGCATCCGAGCCACCAGTAACCTCTCTCAGGAAAACATGCCAACCCTGTTTGTGGAGTCCGTGTTGGAGGTTCACAGTAAATTTGTTCAGCTCATTAACACAGTGCTGAATGGGGATCAGCACTTCATGAGCGCACTTGATAAGGCTTTGACGTCAGTGGTTAACCACAGGGAGCCCAAATCCATCTGCAAAGCACCTGAACTGCTCGCCAAGTATTGTGACAATCTGCTGAAGAAGTCTGCAAAGGGAATGACAGAGAACGAGGTGGAAGACAAGCTGACCAGCTTCATTACCGTGTTCAAGTACATAGATGACAAGGACGTTTTTCAAAAGTTTTATGCAAGAATGTTAGCCAAGCGGTTAATACACGGGCTGTCTTTGTCTATGGACTCGGAAGAAGCCATGATCAACAAACTAAAGCAAGCGTGCGGCTACGAGTTCACAAGCAAGCTCCACAGAATGTACACAGACATGAGCGTCAGCGCAGACCTGAACAACAAATTCAACAACTTCATCAAGACCCAGGAATCACCGGTCGAACTGGGCATCAGCTTCCAGATCTACGTATTACAGGCAGGAGCCTGGCCCCTCACACACGTCCCCTCCTCTACCTTTGCCATCCCACAAGAGCTGGAGAAGAGTGTTCAGATGTTTGAGTTGTTCTATAATCAGCACTTCAGCGGGAGGAAGTTGACCTGGCTGCACTATCTctgcacagGTGAGGTGAAGATGAACTATCTCTCCAAGCCCTACGTTGCCATGGTGACCACCTACCAGATGGCGGTGCTGCTGGCGTTCAACAACAGTGAGACGGTAGGCTACAAGGAGCTCCAGGACTCCACCCAGATGAATGAGAAAGAGCTTCAGAAGACCATCAAGTCCCTGCTGGATGTCAAGATGCTCAACCACGACTCCcaaaaggtcaggggtcaggtgTCAGCAGCCACAGATTCACCTGGAGATCTGGAGTCAGCAGGGTCTTCTTTATTGGAGGAAATCGAGGCAGAGTCCACATTTTCACTAAATATGAGTTTCACCAGTAAAAGAACAAAGTTCAAGATCACAACGTCAATGCAGAAAGACACACCACAGGAGATGGAGCAGACGAGGAGTGCAGTGGACGAGGACCGCAAAATGTATTTACAAGCTGCTATCGTGAGAATCATGAAGGCACGCAAAGTGCTCAGACACAATGCCCTCATACAGGAGGTCATCAACCAGTCCAAAGCCAGATTTAACCCCAGTATCAGCATGATCAAGAAGTGCATTGAGGTGCTCATCGACAAGCAGTACATCGAGAGGAGCCAGAGCTCTGCAGACGAGTATAGCTACGTGGCGTAATGGTGTATAAGGCCCCTACCCCAACCAACTGCTGGCTAAGCAAAGAACGACAGAGGCCATTCTTCATTTATTTTTGGGCTGTCGCTGTCTCGCATGCTCCTatacggagggagggatgaagcAGGTCTGTGGGCCTCCATCTTGGAAACAAACAAAACTGTTCAACCCAGACAGCCACCGAGTCATGACACCCTCTGGCCCCCATCCCCCCCCTCATCTGATTTTATGCTGTTTACAACATCACCAGTGCCACGCACCCATTGCGTCAATGGAAAATGCCTGTAGGTATCTGAGCGCAAAGCTGATAATACATTTTTGGTCGACTTAGCCGAAAACAAAAAAAGAATGGGGGGAAAAAAGCGAGTGAGCTGTGACATTGACAAAAAATGTTAGAGACTAGACGCGGAAAACCATGCTTTCTTTTCTCACGTTTGcagttgtttttaaatgtatCGAAGTTTAAAAGAAATATTGTAATAAAACCG
>XM_036935234.1
ATTAGATATACATGTTTTCATTGTGCACGATACACATTTACATTCTCTGATATTATTATATTAAATTCAAATAATTACTACTCCAATACAGTACACCCTACAGCTGATACAATGGTATTTTCCATAAGGTAGGGTAATGGAGAGCTGTAGCTAAGCGAAAGCGATCAAGCCTGTGACAGTGAAGAAACTTGACTTTTATTAACACATATATTAGTTAGAGCCTGAAGAAGAAGCCATACGATGTCCTTGAAGCCGCGGGTGGTGGACTTTGATGAAACATGGAACAAGCTACTGACGACAATCAAGGCTGTGGTGATGCTTGATTATGTGGAGAGGGCCACATGGAACGACAGATTCTCTGACATCTATGCCTTGTGTGTTGCTTACCCAGAGCCTCTGGGTGAAAAGTTATACACAGAGACCAAGGTGTTCCTGGAGAACCATGTCAGACAATTGTACAAGAAAGTTCTGGAGTCGGAGGAGAAGGTTTTAGTTATGTACCACAGATACTGGGAGGAGTATAGCAAGGGAGCAGACTACATGGATTGCTTGTACAGGTACCTCAACACACAGTTCATCAAGAAGAACAAACTGACAGAGGCAGACTTGCAGTATGGCTATGGAGGGGTTGACATGAATGAACCACTTATGGAGATAGGAGAGCTAGCACTAGACATGTGGAGGAAACTGATGATCGAGCCCCTGCAAGCTGTCCTGATACGGATGCTGCTGAAAGAAGTCAAAAATGACCGGTGCGGTGAGGACCCTAATCAGAAAGTAATCCATGGGGTTATCAACTCCTTTGTTCATGTTGAACAGTACAAGAAAAAGTTTCCTCTCAAGTTTTATCAGGAAATCTTCGAAGGGCCTTTTCTGACGAAAACAGGAGAGTATTACAAACAGGAAGCCTCCAATTTACTGCAAGAGTCCAACTGCTCACAGTATATGGAAAAGGTTTTAGGACGGTTGAAAGACGAGGAGGTGCGATGTCGAAAGTACCTGCATCCCAGCTCCTACGCCAAAGTCATCCACGAATGCCAGCAGAGGATGGTGGCGGACCACCTGCAGTTCCTCCATGGGGAGTGTCAGAACATCATCCGCCAGGAGAAGAGAGACGGTCAGTCTGGTTACAGGAGCGACGACATGGCTAACATGTACACCCTGCTGCGAGCCGTGTCCAGTGGTTTACCTCACATGATCCAGGAGCTCCAGGTCCATATCCACGACGAGGGCATCCGAGCCACCAGTAACCTCTCTCAGGAAAACATGCCAACCCTGTTTGTGGAGTCCGTGTTGGAGGTTCACAGTAAATTTGTTCAGCTCATTAACACAGTGCTGAATGGGGATCAGCACTTCATGAGCGCACTTGATAAGGCTTTGACGTCAGTGGTTAACCACAGGGAGCCCAAATCCATCTGCAAAGCACCTGAACTGCTCGCCAAGTATTGTGACAATCTGCTGAAGAAGTCTGCAAAGGGAATGACAGAGAACGAGGTGGAAGACAAGCTGACCAGCTTCATTACCGTGTTCAAGTACATAGATGACAAGGACGTTTTTCAAAAGTTTTATGCAAGAATGTTAGCCAAGCGGTTAATACACGGGCTGTCTTTGTCTATGGACTCGGAAGAAGCCATGATCAACAAACTAAAGCAAGCGTGCGGCTACGAGTTCACAAGCAAGCTCCACAGAATGTACACAGACATGAGCGTCAGCGCAGACCTGAACAACAAATTCAACAACTTCATCAAGACCCAGGAATCACCGGTCGAACTGGGCATCAGCTTCCAGATCTACGTATTACAGGCAGGAGCCTGGCCCCTCACACACGTCCCCTCCTCTACCTTTGCCATCCCACAAGAGCTGGAGAAGAGTGTTCAGATGTTTGAGTTGTTCTATAATCAGCACTTCAGCGGGAGGAAGTTGACCTGGCTGCACTATCTctgcacagGTGAGGTGAAGATGAACTATCTCTCCAAGCCCTACGTTGCCATGGTGACCACCTACCAGATGGCGGTGCTGCTGGCGTTCAACAACAGTGAGACGGTAGGCTACAAGGAGCTCCAGGACTCCACCCAGATGAATGAGAAAGAGCTTCAGAAGACCATCAAGTCCCTGCTGGATGTCAAGATGCTCAACCACGACTCCcaaaaggtcaggggtcaggtgTCAGCAGCCACAGATTCACCTGGAGATCTGGAGTCAGCAGGGTCTTCTTTATTGGAGGAAATCGAGGCAGAGTCCACATTTTCACTAAATATGAGTTTCACCAGTAAAAGAACAAAGTTCAAGATCACAACGTCAATGCAGAAAGACACACCACAGGAGATGGAGCAGACGAGGAGTGCAGTGGACGAGGACCGCAAAATGTATTTACAAGCTGCTATCGTGAGAATCATGAAGGCACGCAAAGTGCTCAGACACAATGCCCTCATACAGGAGGTCATCAACCAGTCCAAAGCCAGATTTAACCCCAGTATCAGCATGATCAAGAAGTGCATTGAGGTGCTCATCGACAAGCAGTACATCGAGAGGAGCCAGAGCTCTGCAGACGAGTATAGCTACGTGGCGTAATGGTGTATAAGGCCCCTACCCCAACCAACTGCTGGCTAAGCAAAGAACGACAGAGGCCATTCTTCATTTATTTTTGGGCTGTCGCTGTCTCGCATGCTCCTatacggagggagggatgaagcAGGTCTGTGGGCCTCCATCTTGGAAACAAACAAAACTGTTCAACCCAGACAGCCACCGAGTCATGACACCCTCTGGCCCCCATCCCCCCCCTCATCTGATTTTATGCTGTTTACAACATCACCAGTGCCACGCACCCATTGCGTCAATGGAAAATGCCTGTAGGTATCTGAGCGCAAAGCTGATAATACATTTTTGGTCGACTTAGCCGAAAACAAAAAAAGAATGGGGGGAAAAAAGCGAGTGAGCTGTGACATTGACAAAAAATGTTAGAGACTAGACGCGGAAAACCATGCTTTCTTTTCTCACGTTTGcagttgtttttaaatgtatCGAAGTTTAAAAGAAATATTGTAATAAAACCGGTAAACTGATAATTGTATCTACTTTcaaatgtaaagaaaaaaaaacaagttgaGGTGACAAACATGATCCTGCTGcttgtcaaataaataaataaaatactgaGGGTTTTTGGTAAATAA

Function

symbol description
cul2 Predicted to enable ubiquitin protein ligase binding activity and ubiquitin-protein transferase activity. Acts upstream of or within chordate embryonic development and vasculature development. Predicted to be part of Cul2-RING ubiquitin ligase complex and SCF ubiquitin ligase complex. Orthologous to human CUL2 (cullin 2).

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K03870 CUL2; cullin 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036935233.1 False 3155 mRNA 0.47 23 25834973 25856075
XM_036935235.1 False 3033 mRNA 0.47 22 25834974 25856075
XM_036935234.1 True 3176 mRNA 0.46 22 25834975 25856195

Neighbor

gene id symbol gene type direction distance location
fzd8a LOC106578536 coding upstream 104167 25728061 ~ 25730806 (+)
pfkpa LOC106578535 coding upstream 612308 25194453 ~ 25222665 (+)
LOC110535530 LOC106578529 coding upstream 1007951 24797246 ~ 24827022 (+)
LOC118937338 NA coding upstream 1088291 24732370 ~ 24746682 (+)
rmdn1 rmdn1 coding upstream 1235755 24591123 ~ 24599218 (+)
LOC110535542 LOC106578541 coding downstream 2650 25858845 ~ 26401631 (+)
LOC110536591 LOC106578544 coding downstream 761953 26618148 ~ 26700276 (+)
LOC118936350 NA coding downstream 857400 26713595 ~ 26751558 (+)
LOC110535543 LOC106590025 coding downstream 904122 26760317 ~ 26809964 (+)
rab18a LOC106578546 coding downstream 955831 26812026 ~ 26823822 (+)
G959510 NA non-coding upstream 65134 25769055 ~ 25769839 (+)
G959464 NA non-coding upstream 145270 25689336 ~ 25689703 (+)
G959463 NA non-coding upstream 145985 25688764 ~ 25688988 (+)
G959454 NA non-coding upstream 150701 25684049 ~ 25684272 (+)
G959401 NA non-coding upstream 189191 25645549 ~ 25645782 (+)
G959637 NA non-coding downstream 201958 26058153 ~ 26072686 (+)
G959659 NA non-coding downstream 240855 26097050 ~ 26154913 (+)
G959852 NA non-coding downstream 584747 26440942 ~ 26441293 (+)
G960486 NA non-coding downstream 658801 26514996 ~ 26515221 (+)
G958300 idi1 other upstream 1039237 24794600 ~ 24795736 (+)
G957942 NA other upstream 1233320 24600471 ~ 24601653 (+)
G956797 NA other upstream 2058128 23775772 ~ 23776845 (+)
G956728 LOC106613263 other upstream 2169043 23665288 ~ 23665930 (+)
tlcd4a LOC106570700 other upstream 3093726 22712577 ~ 22741263 (+)
G960696 LOC106583976 other downstream 857430 26713625 ~ 26797294 (+)
G960816 armc4 other downstream 1072481 26928676 ~ 26929027 (+)
bambia LOC106578551 other downstream 1552807 27409002 ~ 27412913 (+)
mtpap LOC106578552 other downstream 1906793 27739381 ~ 27765414 (+)
G961864 NA other downstream 1972551 27828746 ~ 27829177 (+)

Expression


Co-expression Network