LOC110535543 (LOC106590025)


Basic Information

Item Value
gene id LOC110535543
gene name LOC106590025
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 26760317 ~ 26809964 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620606.2
CtaattttgaaaataaaaataaattcacGCGGCCAGGGGAatattctaaatatatatatatatatattacatttgatatatatatatattacatacgCCAACACTTTTTTTACAACTAAACAGCATTTTTCCCTTTCTCAATGAAGTAACTGAATAAGGAGTGACCCGCGGGGGAGTGAATTGACCGTGACTTTTCGCAGAGGAGAAAGCTGTTACCAACAAAGCAATTGCTGCTGTGTCTACGGTGTTTAGAGGATCACAACGGGGATtttgaagagcatacatttatTTACGTATGTTGCATCGGAAATAAATCACGCCGATAagATGGACCTGAAACTACTTCTGATTTCAACGTTGTTAGGCGTCATTTGTTACAGCAGTGCTCAGCAAGAAGGGAACGAGTGCATCAAAGCTAATGCCAAATCCTGTGGGGAGTGTATTCAAGTGGGAGCGAAATGTGGCTGGTGCATGGACCCAgGGTTCCTGAAGCAGGGTGAGGCCACATCGACCCGCTGTGACGAGCTGGAGTCCCTGAGGAAGAGAGGTTGTAGCTCCACCAAGGTAGAGAACCCCCAAGGCAGCCAACGGGCCCTGAAGAACAAGGCTGTGACCAACCGCAACAAGGGAGAAGGAAAACTCCGACCAGAGGACATCACACAGGTCCAGCCACAGAAACTCACCCTCAGCCTCAGATCTGGTGAACCCCAGTCTTTTAACCTGAAGTTCAAACGGGCCGAGGATTACCCCATTGACCTCTACTACCTGATGGACCTGTCCTACTCCATGAAGGACGATCTGGAAAACGTCAAGAACCTGGGAACACATCTGATGCTGGAGATGTCAAAGATCACGACTGATTTTAAAATCGgTTTTGGTTCCTTTGTAGAAAAGACAGTGATGCCTTACATTAGCACCACCCCATCCAAGCTGCTGAACCCCTGTACTGGGGACCAGAACTGCACCAGTCCCTTCAGCTACAAGAACGTCCTGAAGCTGACCAGCAATGGACAGGAGTTTAACACCCTGGTGGGACAACAGCAGATCTCTGGAAACCTGGACTCACCGGAGGGAGGCTTTGATGCCATCATGCAAGTGGCTGTGTGTGGTgAGCACATTGGCTGGAGGAACGTCACCCGTCTGCTGGTGTTCTCCACTGACGCTGGCTTCCACTTTGCTGGAGACGGGAAACTAGGAGGGATAGTTTTGCCCAACGATGGGAAATGTCACCTGGAGAACAACATGTACACAGTGAGCCACTACTATGACTACCCCTCCATCGCTCACCTGGTTCAGAAACTTAGCGACAACAACATCCAGACAATCTTTGCCGTCACAGAGGAGTTCCAGCCTGTTTACAAGGAGTTAAAGAATCTCATTCCTAAATCTGCAGTGGGGATACTCTCTGCTAACTCCAGCAACGTTATCAACCTCATTATTGATGCCTACAATTCTCTTTCCTCAGAGGTGATTCTGGAGAACAGCAAGCTACCAGTGGGAGTGACCATAATGTATCAGTCACGCTGCAAGAACGGAGTGACtggtgagggagagatgggaagaaaaTGCTCCAATATCTCAATCGGTGACGAGGTGTCTTTCACCATAAGCATCACAGCTAAGCAGTGTCCTAAAATGGGCAAACCAGAGACCATCAAGATCAAACCCCTAGGGTTCAATGAGGAGGTGGAGATCACTCTGAACTTCATCTGCGAGTGTGACTGTCACAAAGATGGCATTGAGAACAGTGACATCTGCCACAACGGCAACGGGACATATGAATGTGGAGCCTGCAGGTGCAATGAGGGCCGTATTGGTAGACAGTGTGAGTGCAGCACCAACGAGGTGACCAGCGAAGACCTGGATAAGAGCTGCCGTAAAGACAACGGTACAGACATCTGCAGCAACAAcggagactgtgtgtgtggaacCTGTGAGTGCAAGAAGAGAGAGAACCCAGAGGAGCGCTACAGCGGGATGTTCTGCGAGTGTGACAACTTCAACTGTGACCGCTCCAACAACAAACTCTGTGGAGGACATGGTCACTGTGAGTGCAGGGTGTGTATATGTGATGCCAACTGGACAGGCAGTGCCTGTGACTGTTCTCTGGACACCACGACCTGCCTGGCTTCCAACAAGCAGATCTGTAACGGACGAGGCACCTGTGAGTGTGGAACCTGCAGGTGTACTGACCCAAAGTTCCAGGGCCCCAGCTGTGAGATCTGTCCTACCTGTCCAGGGGTCTGCGCAGAACACAAGGAGTGTGTTCAGTGCAGGGCCTTTGGGACGGGGGAGAAGAAGGACACGTGTGAGAGAGACTGTAGCTACTTCAACCTGATCAAGGTGAAGGACAGGGACAAGCTGCCTCAGCCAGGACAGGCCTTCCCCCTGATGCACTGTAAGGAGAGGGATGCCAACGACTGCTGGTTCTACTACACCTACGCTGTCAACAAGACAGAGAAGGAGGTCCATGTGATGGAAACACTAGACTGCCCTGAGGGCCCTGACATCATCCCCATCGTGGCTGGCGTGGTGGCGGGCATCGTCCTGATCGGCCTGGCTTTGCTTCTCATCTGGAAGCTGCTCATGATCATCCACGACAGGAGAGAGTTCGCCAAGTTTGAGAAGGAAAAGATGAATGCTAAATGGGACACGGGCGAAAACCCTATCTACAAGAGTGCTGTTACGACAGTGGTCAACCCCAAATATGAAGGCAAATGATGGAGCTTGAAAAACACTGTATGCAAATATAGTGAGAGGGATAGTGGCATGGGAGGGGGGATTCATTGTATGTATTTTGTAATTTCTTATTTTCGTTGCTTCAGTATTATAACATTACATTTGGCCAATACATTTGGTATGTTTACTAACATTTTATTTTCTAtgcattttctttttttaagtACAGTTATGTGTATATACTTTTAAGATTATTTCCTTTCTTGAACCACTGTTTGAAATGAAGGTTTTTGCCACAGAACTGGTATGGGCAAAGGGTTTTACCTTTCAAAGACAACATCTGtactccaaatggcaccctattccctttatagtgcactacttttgacaagggccggTGGGGCTCTGGTAAAAGTAGCACTATAAAGGAGATAATAGGATGCCATTAAGGAAGCAGAAATAGACAATACCCATATGGACACAAAGAGCTCTCATTCTCTACATGGACTTGATGTTAATGTGTTATTGTCtgtctaaatgacaccctattccctttatagtgcactacttttgacgatgGCCaatgggctctgatcaaaagtagttaACTACTGTATATAGGAAATAGAGAAATTTGGAATGAAGAAATCGAGTTTCTGACAGGACCTGAGGCTAAAGCATACCTTTTGCATTGTGGTTATAAAGTATTTTTTTCAGCCAaagggtacagtatatatgtagtaAACACATTGATTTGTGTATAAAATAGTCATCCATTAAGCAGGATTACAAGAATCTGGATATATCATTGAGAGCAGTTTAAAGATGAATTTAGCACATCCTTCACATAATTGTCAATCATAGAAAACCATTGGTTGACTCTAACCTTGTCATCAGATAACATATCATGCGTGAAGAAGTGCTATTACATTGATGTTTTAAAAGTGATCATTGCACTATTGAGGAGTACAAGTTTGCATTGCGAAAGGACTGAAAAGACTAAGTATACATTGTCATAAGACTGTCATCAAGTCTATTTTAAAGGGATTGAAAACCACTTGTTTTAATGGGATAAAATAATCTAAATCAATGAATTACAC

Function

NR:

description
integrin beta-1-like isoform X1

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0007275 multicellular organism development biological_process
GO:0007160 cell-matrix adhesion biological_process
GO:0008305 integrin complex cellular_component
GO:0046982 protein heterodimerization activity molecular_function
GO:0001968 fibronectin binding molecular_function

KEGG:

id description
K05719 ITGB1, CD29; integrin beta 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620606.2 True 3779 mRNA 0.46 16 26760317 26809964

Neighbor

gene id symbol gene type direction distance location
LOC118936350 NA coding upstream 8759 26713595 ~ 26751558 (+)
LOC110536591 LOC106578544 coding upstream 60041 26618148 ~ 26700276 (+)
LOC110535542 LOC106578541 coding upstream 359382 25858845 ~ 26401631 (+)
LOC110536590 cul2 coding upstream 904122 25834973 ~ 25856195 (+)
fzd8a LOC106578536 coding upstream 1029511 25728061 ~ 25730806 (+)
rab18a LOC106578546 coding downstream 2062 26812026 ~ 26823822 (+)
waca LOC106590019 coding downstream 547802 27357766 ~ 27401629 (+)
bambia LOC106578551 coding downstream 599589 27409002 ~ 27412913 (+)
LOC110536609 NA coding downstream 783162 27593126 ~ 27597600 (+)
mtpap LOC106578552 coding downstream 929417 27739381 ~ 27765414 (+)
G960728 NA non-coding upstream 12386 26747039 ~ 26747931 (+)
G960690 NA non-coding upstream 58042 26702050 ~ 26702275 (+)
G960689 NA non-coding upstream 59136 26700952 ~ 26701181 (+)
G960633 NA non-coding upstream 70112 26657725 ~ 26690205 (+)
G960486 NA non-coding upstream 245096 26514996 ~ 26515221 (+)
G960776 NA non-coding downstream 48283 26858247 ~ 26858448 (+)
G960778 NA non-coding downstream 50643 26860607 ~ 26860822 (+)
G960780 NA non-coding downstream 51801 26861765 ~ 26862343 (+)
G960781 NA non-coding downstream 53374 26863338 ~ 26863564 (+)
G960783 NA non-coding downstream 57401 26867365 ~ 26867597 (+)
G958300 idi1 other upstream 1964581 24794600 ~ 24795736 (+)
G957942 NA other upstream 2158664 24600471 ~ 24601653 (+)
G956797 NA other upstream 2983472 23775772 ~ 23776845 (+)
G956728 LOC106613263 other upstream 3094387 23665288 ~ 23665930 (+)
tlcd4a LOC106570700 other upstream 4019070 22712577 ~ 22741263 (+)
G960816 armc4 other downstream 118712 26928676 ~ 26929027 (+)
G961864 NA other downstream 1018782 27828746 ~ 27829177 (+)
G961984 NA other downstream 1087202 27897166 ~ 27941575 (+)

Expression


Co-expression Network