rab18a (LOC106578546)


Basic Information

Item Value
gene id rab18a
gene name LOC106578546
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 26812026 ~ 26823822 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620609.2
TGCctcactccagtacagtaggtggcggtccATGGCTCTTTGAGGTGGTTGCGATCCGCCAATACAAATTTAAAGAAGAAGTCTCATTAGCTAGTTGACAACTGTTCTAGGGTGTATTTTTACAACTCTCAGTTGAAGTACAAGTATAGTCTATAGATCGCATAGGAAGATGGAAGACGACGTTTTAACAACACTGAAAATATTAATAATTGGAGAAAGTGGCGTTGGGAAGTCCAGTCTTCTCTTGAGATTCACAGATGACACATTTGATCCAGAACTAGCAGCAACAATAGGCGTTGATTTCAAAGTGAAGACCATCTCAGTGGATGGGAACAAGGCAAAGTTGGCAATATGGGACACGGCTGGCCAGGAGCGTTTCCGAACCCTGACACCTAGTTATTACCGCGGCGCGCAGGGAGTCATCCTGGTGTATGATGTAACACGACGGGATACTTTCACCAAGCTGGACAACTGGCTCAATGAGCTGGAGACGTACTGCACAAGGAATGACCTTGTCAAGATGCTGGTCGGGAACAAAATTGATAAGGAAAACCATGAACTAGACAGGAACGAAGGCCTGAAGTTTGCAAGAAAACATTCCATGCTGTTTATAGAGGCCAGTGCTAAGACGCGTGATGGGGTCCAGTGTGCGTTTGAGGAGCTGGTTGAGAAGATCATCCAGACCCCTGGACTGTGGGAGAGCGAGACGCAGGGCCGAGGGGTCCAGCTGGGCCGGCAGGACCAGGCTGCAGGGGGTGGCTGTGGGGGTTACTGCTCCCTGGTATAGACCCACACTACATTCACATGCAACGCGCGCACATACGAAGCAtagacactcatatacacacacatacgaaacgcaccccacacacactcacttgaAAGACACACCCAACCAAACACTCACACTGATGGCTGATGTCCTGCGATGAGGACTATGAAAGCTATAGTTTTCAGACTATTTCCCTACATCAGCCCCTGAGGTGTGGAGTGAGGCAGGGCTGCTCCTGACCAGCACCCTCTGCTCACTGGCTGTGATCATTCATAGGGATGTTGCCGTTTGCACACTTCCTGTTATCATGGC

Function

NR:

description
PREDICTED: ras-related protein Rab-18

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07910 RAB18; Ras-related protein Rab-18

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620609.2 True 1084 mRNA 0.49 7 26812026 26823822

Neighbor

gene id symbol gene type direction distance location
LOC110535543 LOC106590025 coding upstream 2062 26760317 ~ 26809964 (+)
LOC118936350 NA coding upstream 60468 26713595 ~ 26751558 (+)
LOC110536591 LOC106578544 coding upstream 111750 26618148 ~ 26700276 (+)
LOC110535542 LOC106578541 coding upstream 411091 25858845 ~ 26401631 (+)
LOC110536590 cul2 coding upstream 955831 25834973 ~ 25856195 (+)
waca LOC106590019 coding downstream 533944 27357766 ~ 27401629 (+)
bambia LOC106578551 coding downstream 585731 27409002 ~ 27412913 (+)
LOC110536609 NA coding downstream 769304 27593126 ~ 27597600 (+)
mtpap LOC106578552 coding downstream 915559 27739381 ~ 27765414 (+)
jcada LOC106578555 coding downstream 986227 27810049 ~ 27845341 (+)
G960735 NA non-coding upstream 41842 26769365 ~ 26770184 (+)
G960728 NA non-coding upstream 64095 26747039 ~ 26747931 (+)
G960690 NA non-coding upstream 109751 26702050 ~ 26702275 (+)
G960689 NA non-coding upstream 110845 26700952 ~ 26701181 (+)
G960633 NA non-coding upstream 121821 26657725 ~ 26690205 (+)
G960776 NA non-coding downstream 34425 26858247 ~ 26858448 (+)
G960778 NA non-coding downstream 36785 26860607 ~ 26860822 (+)
G960780 NA non-coding downstream 37943 26861765 ~ 26862343 (+)
G960781 NA non-coding downstream 39516 26863338 ~ 26863564 (+)
G960783 NA non-coding downstream 43543 26867365 ~ 26867597 (+)
G960696 LOC106583976 other upstream 14732 26713625 ~ 26797294 (+)
G958300 idi1 other upstream 2016290 24794600 ~ 24795736 (+)
G957942 NA other upstream 2210373 24600471 ~ 24601653 (+)
G956797 NA other upstream 3035181 23775772 ~ 23776845 (+)
G956728 LOC106613263 other upstream 3146096 23665288 ~ 23665930 (+)
G960816 armc4 other downstream 104854 26928676 ~ 26929027 (+)
G961864 NA other downstream 1004924 27828746 ~ 27829177 (+)
G961984 NA other downstream 1073344 27897166 ~ 27941575 (+)

Expression


Co-expression Network