LOC110536609


Basic Information

Item Value
gene id LOC110536609
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 27593126 ~ 27597600 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002475481.2
cAGAGATAACAAAATGTATCTAAAAGatgctgtgttgttcaatgtacacGTACCCAGGTCAAAAGTCCTGACCTCATGTCCGCAATGGTCACACGTAGGGAAATAGAACCTATcagaagagccctgtggcttctTGCTATTCGGCATGGAAGAGTGGGAAATGTGGGGACCCGGTGTCTACGTAGGCTACACGTAACTATGTGGAAAACTATGGATCACAGATGTCTGTGAGtgagcagagaagagaggagaaagaggacagCAGGAAGTTATCACAGTATGAAGAGACTTCCCTCGACATACTACACGTCGACACAACTAACAATTCCCCTTCCTGTTGGTGTTTTGTTTTGTGAGCCGTCCAGGACTCCTAAATTAGACGCCTCTCCCTGGTTTTACTGCAACTTATCATCTCCTCTTGGCATTGTTGCAGACATCAATCCAACCGAGAGAGCTGCATCCTCTATTTTTCATGTAAAGAGGCAAggtttgtgtcccaaatagcacccttttcCCTAGGTAGTGCATTCGTTTTGACCagacatggtcaaaagtagtggactgcatagggaatagggtgccatttgggatgcagttatGGCCTTGGAAGCCTTGTCAGTAAATCAGAAAGTATTTTTCTGGTGTGGAACCCACAGCAGCTGTCTCAATAGGGTGGTGGGGACTACTGTGAGTCTGAAGTTTGAGAGTGGGGGTTGAGAGATATGGACTTCGGTTTGTTTCCTTTAGTTCACCCTTCTTCACTCATACTTTTTCTGTCACAAATGAGCTATAAATTGATGATATAGCGACGGGAGGAAGAAAAAGGACACGAGGTGGGTAGACACTATGCCTCCGACTGTCATTATAAACTGTGAaagacaacaacaataacaacaacaacaaaacaacagcaGTCTCACCACACTAGTAAATCTCTCTGTTGGTGTAACAGACAATACAAGGACCTGAACAAAAGAAATTAAgaatggaaagagggagggagactggagaggaaggaaagagtaGAGActgaaaaggagagaaagagattggaGACAAAAGAGGAGAGAAATCGTTTGGACAGGGAATCAAGTTGAGATAGGGAGTGGTTAAGATGAAATAGAGAGTGAAGATGAGAATGagacagaagagaagagggagatatGAAAGGGAGATAGGAAATGAGactggaaaggagagggagagaggggtgacggAGCGatagagacagaagaggagagggagagagaggttaaggCGCAGTAGGCTGAAGAGGAAAGGGTGAGATAGAAGGAGAGTGTTTAAGGGCCAGCAGTCTGATAGGTCTGTCTGTGAAACCTCAGTCACACTTCAGTGAAAAGCAACCTTATGTACAGCCCCCACTCTGAGCACATCTATATTCGCAACTACGTTAAGCCTACATGGTCGGAATATGTTTGGAAAATTCAAAGCAACACTTAAGCCACTGCGTCACTCACTGACCAACGCAATTCACGAGGCTGAGGTCATTAGCCCAATGACTGTTGAAAGTGATGGACTTCTcagggtgcacaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002475481.2 True 1555 mRNA 0.45 3 27593126 27597600

Neighbor

gene id symbol gene type direction distance location
bambia LOC106578551 coding upstream 180213 27409002 ~ 27412913 (+)
waca LOC106590019 coding upstream 191497 27357766 ~ 27401629 (+)
rab18a LOC106578546 coding upstream 769304 26812026 ~ 26823822 (+)
LOC110535543 LOC106590025 coding upstream 783162 26760317 ~ 26809964 (+)
LOC118936350 NA coding upstream 841568 26713595 ~ 26751558 (+)
mtpap LOC106578552 coding downstream 141781 27739381 ~ 27765414 (+)
jcada LOC106578555 coding downstream 212449 27810049 ~ 27845341 (+)
svila LOC106578556 coding downstream 269426 27867026 ~ 28011031 (+)
LOC110535556 LOC106578558 coding downstream 534522 28132122 ~ 28249912 (+)
LOC110536610 NA coding downstream 894062 28491651 ~ 28492829 (+)
G961364 NA non-coding upstream 172002 27420918 ~ 27421124 (+)
G961357 NA non-coding upstream 186920 27405995 ~ 27406206 (+)
G961345 NA non-coding upstream 235406 27357510 ~ 27357720 (+)
G960911 NA non-coding upstream 409086 27179188 ~ 27184040 (+)
G961502 NA non-coding downstream 34566 27632166 ~ 27632484 (+)
G961514 NA non-coding downstream 52616 27650216 ~ 27650418 (+)
G961739 NA non-coding downstream 87690 27685290 ~ 27685530 (+)
G961769 NA non-coding downstream 117542 27715142 ~ 27715487 (+)
G961863 NA non-coding downstream 230861 27828461 ~ 27828660 (+)
G960816 armc4 other upstream 664099 26928676 ~ 26929027 (+)
G960696 LOC106583976 other upstream 795832 26713625 ~ 26797294 (+)
G958300 idi1 other upstream 2797390 24794600 ~ 24795736 (+)
G957942 NA other upstream 2991473 24600471 ~ 24601653 (+)
G961864 NA other downstream 231146 27828746 ~ 27829177 (+)
G961984 NA other downstream 299566 27897166 ~ 27941575 (+)
G962100 NA other downstream 629928 28227528 ~ 28229401 (+)

Expression


Co-expression Network