mtpap (LOC106578552)


Basic Information

Item Value
gene id mtpap
gene name LOC106578552
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 27739381 ~ 27765414 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620616.2
GAGCTTTGATTTTTGGCAGGTTTCGGATGCCATAGAACATACACACGCATGCGCTTTCACGGTAGTCTCAGTGCAGCGATGGCGTCTTCCATTGCGATGTGCAGGTTGCATTTGAGGGGCAGCCTCTCTAAATGCTTTAAAAAAGTAGATTCATGTTTTCAAAGAAAGTTCGGAACTAGTACTGCTGCTACGAAGACCGATGCACCCAATAAGAAATATAAAATCGACTCAAAGGATGGAAACAAATCTTTTTACACAGTCCAAGAGGAGAAGATAGAGCAGGCAGAGAGATCTGTCCTTATCAGCTGCCCGGCCAAAACCAACGAGAAAAAGTTCCTCAGCTATTTATCCAGACATGGAGATATCAACAAATGTTTCTTTTATGAAAGCTACGGTACATATGCTGTGGTGGAGTTTTCCAACAAGGAGAGCCTCACATCACTCCACGAAGGGACGGCCATCCCCAGTATCAACCATGAAGCTACAGTGCCTTTCAAGTCCAGACTGCTTTCGCTCAGAAACGCTGGTCCTGTGGACATGTCCAACGACCAGTCCGCCCCTCCGTGCCAACCACAGACCACCATACACATTAACGACCTCATACAGAGACTTTCCAAAGAAGCCAGTATAGACCAACAAATCTCCTCCCTTACAGAGACGTACCAGCTGACGGAAGAGAACGTCTGCCTGCGTTTCCTGGTCTGCTCTCTTCTAAAGGACATAGCTGCTGCATATTTCCCAGAATGCACCATTCGGCCCTTTGGCTCCTCCGTCAACGGCTTCGGGAAGCTGGGCTGTGACCTAGACATGTTTCTGGACCTGGACGGCATCAGTGGAAGGAATCTGAAAAGGCCAAAAGCAGGGCTCTCCTTGGAGTACCAGACAAAGAGGTCTGCGTCTGAGCGGGCGTGTACCCAGAGTATCCTGTCTGTGATCGGGGAGTGTGTAGACCAGTTTGGGCCTGGCTGTGTCGGGGTGCAGAAGATCCTCCAGGCTCGCTGTCCCCTAGTCCGATTCGCCCACCAACCGTCAGGGTTCCAGTGTGACCTCACGGCTAAcaatagGGTAGCGATGAAGAGCTCTGAGCTTCTGTACCTGTATGGGGGGCTGGACCGGCGGGTGCGTTGCCTGGTGTTCAGTGTCCGGTGCTGGGCTCGGGCCCACAGTATCACCAGCAGCATACCTGGAGCCTGGATCTCAaacttctctctcactgtcatgGTCCTATTCTTCCTCCAGAGGAGAACTATTCCTATCCTACCCACCCTGGACCACCTCAAGGAACTAGCAGGCCCTCTAGATAAGAGTGTCATCGAGGGAAACGACTGCACATTTGTCAGCGACTTCACAAAAATACGACTGCAAGACAACACAGAGACATTAGAGCAACTGCTGCAGGAGTTCTTTGAGTTCTATGGAACCTTCGCGTTCAACCGCATGTCGATCAATATCAGAAAgggCAGGGAGCAAAACAAACCCGAGATGTCCCCATTGCACATCCAGAACCCCTTTGAGCCCGCGCTGAACGTCAGTAAGAATGTTAACGGAACGCAGCTGGAGCGCTTCGTGGCGCTGTGTCGGGAGAGCGCCTGGATGCTGCAGCAGCGGGAGTTCAACGTACCGCACAGCGGCAGCGCTACCGGAAACAACGCCCCCTGGGGCCTGGCAGCGCTCCTCATGCCCTCGGTCTCCCAGGTGGCCGGGGTTAAAGGTCgtaagaagaggaagagggagccGGCCAGCGAGAGGATAAAGGGCCTGCTGGAGTCTCTAAAGAACAGTGAGGTGAAGAGCTAGAGAGCGGCCATGCAGTACAGCCCCACTAGAGGTCACTGGTGAGTTCTGGGTCTATGGGTAACAGTGGCTACATGGCCGTAAAGAATGGACTTGTGAGGACTTGTCCAATTGCTTTTCACACAACTGCAAATAACCGATCAgagccaaaccaagctgtactgataTGGCTTGCGCCATGGTTGCTGCAACCTACCTGAAAAGGACAATGTGACAACAGTTTGGTTTTGTTCAGCAcggtagtgtgaaaagggtaccTGTGACCAGACTCGTTATAAGAAAGTCTGACTACTCTACATGGCGACGTTTGCACATCGATGTACATAAAGACTTGAAGTTATAGCGTCCGCTGACATCTTTTTGTTTGTATACATTTAGAGCCGATGTATTCAGATGTTTTTTATTAAAGATCCTGAACA
>TU1096304
GTCCCAGATGGCAtcgtattccctacatagtgcaccacttttgaccagagcgctatgggccctggtcaattgtagggcactatatagggaatagggagccaattaGAACGCGGACACATCCACGTGTTAGCCTGGcctgggaagaggagaggtgtGCCAGACTCAGACCAGCCCTATCCATTCTATCTGGGCCCATGTGGCATAGATAACAACAGCCACAAAACACCTGACCTCACCAGCGTGACCAATAAGATAGATGGACCGTGTATAAAGACCAGTTGGTGTTTTGACAGCTCTTTCTCACTTTCACCATCTCGTTCCCTCttactttttctctctttttctctctctccatctcacgctttctccttctctcgcttGCTCTCGTTCAATCTCttactttctctttctttctctctgtctcacagggCAGGGAGCAAAACAAACCCGAGATGTCCCCATTGCACATCCAGAACCCCTTTGAGCCCGCGCTGAACGTCAGTAAGAATGTTAACGGAACGCAGCTGGAGCGCTTCGTGGCGCTGTGTCGGGAGAGCGCCTGGATGCTGCAGCAGCGGGAGTTCAACGTACCGCACAGCGGCAGCGCTACCGGAAACAACGCCCCCTGGGGCCTGGCAGCGCTCCTCATGCCCTCGGTCTCCCAGGTGGCCGGGGTTAAAGGTCgtaagaagaggaagagggagccGGCCAGCGAGAGGATAAAGGGCCTGCTGGAGTCTCTAAAGAACAGTGAGGTGAAGAGCTAGAGAGCGGCCATGCAGTACAGCCCCACTAGAGGTCACTGGTGAGTTCTGGGTCTATGGGTAACAGTGGCTACATGGCCGTAAAGAATGGACTTGTGAGGACTTGTCCAATTGCTTTTCACACAACTGCAAATAACCGATCAgagccaaaccaagctgtactgataTGGCTTGCGCCATGGTTGCTGCAACCTACCTGAAAAGGACAATGTGACAACAGTTTGGTTTTGTTCAGCAcggtagtgtgaaaagggtaccTGTGACCAGACTCGTTATAAGAAAGTCTGACTACTCTACATGGCGACGTTTGCACATCGATGTACATAAAGACTTGAAGTTATAGCGTCCGCTGACATCTTTTTGTTTGTATACATTTAGAGCCGATGTAGTCATTCTGAAAAGTCATTCTCTCATGGCTaactaccaggaagtttgaaaaggcgggctgagtgggcggggagcttatattcatgagctcgccttgactgacagctctttgaaacgcTTATGTCAAGCAACTTGGATGCAGTTAGCAGTGTTGCAGTGAAATCATCTCAAGCAAATTTTGTGAGacacaaagcaactcaaacaacattgaaattgcatcaattaggcctcccgagtggcgcagtggtctaaggcacgaCATAatagtgctagctgtgccactagagattctgggttcgagtccaggctctgtcgcagctggccacgaccgggagacccatggggcggcgcacaattggtccagcgacgtcgggttaggggagggtttggccggcagggatgtccttgtcccatcgcgctctagcagaccgggcgcagtgcacgctgacacagttgccaggtgtacggtgtttcctccgacacattggtgcggctggcttccaggttaagtgggcattgtgtcaagaagcagtgcggcttggctgggttgtgtttcggaggacgcacggctctcgaccttcgcctctcccgcgtccgtacgggagttgcaccgatgagacaagactgtaacttccagttggataccatgaaattggggagaaaaaggggttaaaaaatatattttttaattgcatTGTTtacataataaaaaatatatctcCCCATTTTGGCATGTCTCTTGTGATGTGGTTCACAGCAGCACTGTGTTCACTTGACAAgccctagctagccagtaactagctaacaccagacacagatgaaaggggaaatGTGTAAGTATCTTTGCCATAGATGAACAAGGTAAACTTTTAATAAGATTTTCTGACACCCTACAGTCAAATTTTGgcaccagtagagtagctatTTAGCCTCTCTGCAAACACGCCTTCTCTGTTGGTGctacttatttaaattaggtaagagaatatgttaccattggtgtattaaaatgTGTTAAATTGATGTCCCCTTAATAATGGATCCAAGTGTTTGACATCGGGGAGGGGACCAgagtaactttatgatcaaactttatcAGTGTAGAAGAAACAGTTATTTTtcatactttgatctggtttcCTTCAAATATCATCACATTTCATGAAAAACATCACTTTGACTGTTCAGGACCTTGAAATCAGTGTCACAAAATGGACTAAGACTTTTTAATGACATAATAAAAAC

Function

NR:

description
poly(A) RNA polymerase, mitochondrial-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620616.2 False 2213 mRNA 0.51 9 27739381 27764170
TU1096304 True 2396 TUCP 0.48 2 27762988 27765414

Neighbor

gene id symbol gene type direction distance location
LOC110536609 NA coding upstream 141781 27593126 ~ 27597600 (+)
bambia LOC106578551 coding upstream 326468 27409002 ~ 27412913 (+)
waca LOC106590019 coding upstream 337752 27357766 ~ 27401629 (+)
rab18a LOC106578546 coding upstream 915559 26812026 ~ 26823822 (+)
LOC110535543 LOC106590025 coding upstream 929417 26760317 ~ 26809964 (+)
jcada LOC106578555 coding downstream 45879 27810049 ~ 27845341 (+)
svila LOC106578556 coding downstream 102856 27867026 ~ 28011031 (+)
LOC110535556 LOC106578558 coding downstream 367952 28132122 ~ 28249912 (+)
LOC110536610 NA coding downstream 727492 28491651 ~ 28492829 (+)
LOC118937385 NA coding downstream 734940 28499110 ~ 28506016 (+)
G961769 NA non-coding upstream 23894 27715142 ~ 27715487 (+)
G961739 NA non-coding upstream 53851 27685290 ~ 27685530 (+)
G961514 NA non-coding upstream 88963 27650216 ~ 27650418 (+)
G961502 NA non-coding upstream 106897 27632166 ~ 27632484 (+)
G961364 NA non-coding upstream 318257 27420918 ~ 27421124 (+)
G961863 NA non-coding downstream 64291 27828461 ~ 27828660 (+)
G961870 NA non-coding downstream 69940 27834110 ~ 27834331 (+)
G961942 NA non-coding downstream 88234 27852404 ~ 27852634 (+)
G961953 NA non-coding downstream 95188 27859358 ~ 27860622 (+)
G961958 NA non-coding downstream 98823 27862993 ~ 27863456 (+)
G960816 armc4 other upstream 810354 26928676 ~ 26929027 (+)
G960696 LOC106583976 other upstream 942087 26713625 ~ 26797294 (+)
G958300 idi1 other upstream 2943645 24794600 ~ 24795736 (+)
G957942 NA other upstream 3137728 24600471 ~ 24601653 (+)
G961864 NA other downstream 64576 27828746 ~ 27829177 (+)
G961984 NA other downstream 132996 27897166 ~ 27941575 (+)
G962100 NA other downstream 463358 28227528 ~ 28229401 (+)
G965838 NA other downstream 3054668 30818838 ~ 30821252 (+)

Expression


Co-expression Network