LOC110536610


Basic Information

Item Value
gene id LOC110536610
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 28491651 ~ 28492829 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002475482.2
ACAGTTTCCACTGCTGTGCAGCAGGCCAGAGTGAAAAGGGATTTCCATGCCATAGCTAGATTTCACAATGTCATTGGAGCAATTGACTGCACCCACATCTCAATAAAAGCACCATCATTGAACGAATTCAACGTCGTCGACAGAAAAGGTTTCCATTCTGTCAATGTGCAGGTCATCTGTGATTCACATTTGGAATTGTTGAATTTAGTGGACAAATGGCCAGGTTGGACACATGAATAATTCATTGTGCAGAACAGTTCAGTTGGTCTTAACCTCCAGGAAGGAGCTGTTGAGGATGGACGGCTCATTGGAGACCGGGGCTACCCATTAAAAACATGGCTAATGACTCCCCTCACAAACCCCTCAAACCAACAAGTGGCCAGGTTTGCTACATTGTCAAGGCTTGCAGTGCGCTCCACAACATTGCAATCAAAAACAGCATTCCACTGAATGATCCACCCAGACCCGATGAGCCCATGCCTGACAGGGAGTGTTTCCCACCACCCATAGCCCTGGCACTGAGGACAATAGTCAATATCGGTTTTAGGACTGATTCAGTCCTGAAGCGCTCGCCAAAGAGGACACCGTTCTTGTAGGCCTGGGGATGAGGGGGTCAGGCAAATCACCCACATCTGTCAAGATTTCATGTCTAAATATGGTTGCAAAAATAAAGC
>TU1096966
CCACAATACACACAGTTTCCACTGCTGTGCAGCAGGCCAGAGTGAAAAGGGATTTCCATGCCATAGCTAGATTTCACAATGTCATTGGAGCAATTGACTGCACCCACATCTCAATAAAAGCACCATCATTGAACGAATTCAACGTCGTCGACAGAAAAGGTTTCCATTCTGTCAATGTGCAGGTCATCTGTGATTCACATTTGGAATTGTTGAATTTAGTGGACAAATGGCCAGGTTGGACACATGAATAATTCATTGTGCAGAACAGTTCAGTTGGTCTTAACCTCCAGGAAGGAGCTGTTGAGGATGGACGGCTCATTGGAGACCGGGGCTACCCATTAAAAACATGGCTAATGACTCCCCTCACAAACCCCTCAAACCAACAAGTGGCCAGGTTTGCTACATTGTCAAGGCTTGCAGTGCGCTCCACAACATTGCAATCAAAAACAGCATTCCACTGAATGATCCACCCAGACCCGATGAGCCCATGCCTGACAGGGAGTGTTTCCCACCACCCATAGCCCTGGCACTGAGGACAATAGTCAATATCGGTTTTAGGACTGATTCAGTCCTGAAGCGCTCGCCAAAGAGGACACCGTTCTTGTAGGCCTGGGGATGAGGGGGTCAGGCAAATCACCCACATCTGTCAAGATTTCATGTCTAAATATGGTTGCAAAAATAAAGCTTGAC

Function

NR:

description
putative nuclease HARBI1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002475482.2 False 674 mRNA 0.47 4 28491662 28492824
TU1096966 True 690 lncRNA 0.47 4 28491651 28492829

Neighbor

gene id symbol gene type direction distance location
LOC110535556 LOC106578558 coding upstream 242176 28132122 ~ 28249912 (+)
svila LOC106578556 coding upstream 480631 27867026 ~ 28011031 (+)
jcada LOC106578555 coding upstream 646321 27810049 ~ 27845341 (+)
mtpap LOC106578552 coding upstream 727492 27739381 ~ 27765414 (+)
LOC110536609 NA coding upstream 894062 27593126 ~ 27597600 (+)
LOC118937385 NA coding downstream 6286 28499110 ~ 28506016 (+)
LOC110535568 LOC106578592 coding downstream 2596040 31088864 ~ 31169983 (+)
LOC110535570 LOC106578590 coding downstream 3261045 31753869 ~ 31790306 (+)
LOC110535575 LOC105028291 coding downstream 3857858 32350682 ~ 32354712 (+)
LOC110535577 LOC106578587 coding downstream 3878637 32371461 ~ 32390805 (+)
G962327 NA non-coding upstream 12669 28477036 ~ 28478993 (+)
G962324 LOC108280341 non-coding upstream 17271 28473783 ~ 28474391 (+)
G962318 NA non-coding upstream 30007 28460634 ~ 28461655 (+)
G962317 NA non-coding upstream 32597 28458673 ~ 28459065 (+)
G962316 NA non-coding upstream 33716 28457738 ~ 28457946 (+)
G962418 NA non-coding downstream 123084 28615908 ~ 28616493 (+)
G962981 NA non-coding downstream 228356 28721180 ~ 28722160 (+)
G963007 NA non-coding downstream 244522 28737346 ~ 28737567 (+)
G963044 NA non-coding downstream 269591 28762415 ~ 28762633 (+)
G963056 NA non-coding downstream 280540 28773364 ~ 28773575 (+)
G962100 NA other upstream 262261 28227528 ~ 28229401 (+)
G961984 NA other upstream 550087 27897166 ~ 27941575 (+)
G961864 NA other upstream 662485 27828746 ~ 27829177 (+)
G965838 NA other downstream 2326014 30818838 ~ 30821252 (+)
LOC110536614 LOC106578612 other downstream 4891219 33383589 ~ 33386375 (+)
LOC110535592 lmbr1 other downstream 4965537 33411705 ~ 33473890 (+)
G969455 LOC106578609 other downstream 5110223 33603047 ~ 33603674 (+)
G969456 LOC106578609 other downstream 5111689 33604513 ~ 33604810 (+)

Expression


Co-expression Network