LOC118937385


Basic Information

Item Value
gene id LOC118937385
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 28499110 ~ 28506016 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC118937385
ATGTGGGGGCATCGAAACTCCGGAAACCTTGACTCACCAGAGGGGGCCTGGATGCCTTGATGCAGGCCGCCATCTGCTGTGAGGATATTGGCTGGAGGAACGTCACCCGTTTGCTGGTGTTCTCCACTGATGCTGGCTTCCACTTTGCTGGAGACAGTGAACCTGGGAGCGATCGTTCTGCCCAACGATGGGAAATGTCACCTGGAAAACAATGTGTACACCAGAGGTAACCTCCAGGTACAGCTATGCTCTATCCAGAACCCCTCAATAAACACAATAGGATTTGCAAGTATAACAGAGTTCCTTGAGCTAATTCCAAGGCTAAAACTCAGTGGGATAACACAGCCTTGTAGAGTGCATGCAGGAAACCCTGGTTTGTATCCCATTGGTCACACTAGCATGTCTGACCTGACCTCTGAGGTTGTTATGGAGAAGAGATAGCTGCCTGCAGGCTTCCAGATATCATACAGCTCCCACTGTAAGAACAATGATGAAGAgctgctggagagagaggacCAGGGAAGGTGGTGCTCCAATATATCCATTggtgatgaggtgtgtgtgtgtgtgtgtgtgagagagagatacatacagttgaagttatatacacctcagccaaacacatttaaactcagtttttcacaattcctgacatttaatcctagcaaTATGGGACAGTTGTGTGGGGTCATCAAGCCCCAGGGGTATAGTGAGGAGCTGGAGATTTTGCTGAAGCCCATATGTGACCGTCCATGTCAGAGGGACAGGGTTCCTCACTGTCCAGCCTGTAGCCCTGGTAACAGTGCCCTCGAGTGTGGAGTGTGCAGCAGCCTGTGCCCCACCTGCCCTAGCGCATGCACCGCACACAGGTACGGAGTGGCAGCCAAGTGA

Function

NR:

description
integrin beta-1-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC118937385 True 891 mRNA 0.51 7 28499110 28506016

Neighbor

gene id symbol gene type direction distance location
LOC110536610 NA coding upstream 6286 28491651 ~ 28492829 (+)
LOC110535556 LOC106578558 coding upstream 249624 28132122 ~ 28249912 (+)
svila LOC106578556 coding upstream 488079 27867026 ~ 28011031 (+)
jcada LOC106578555 coding upstream 653769 27810049 ~ 27845341 (+)
mtpap LOC106578552 coding upstream 734940 27739381 ~ 27765414 (+)
LOC110535568 LOC106578592 coding downstream 2582848 31088864 ~ 31169983 (+)
LOC110535570 LOC106578590 coding downstream 3247853 31753869 ~ 31790306 (+)
LOC110535575 LOC105028291 coding downstream 3844666 32350682 ~ 32354712 (+)
LOC110535577 LOC106578587 coding downstream 3865445 32371461 ~ 32390805 (+)
LOC110535578 LOC106578586 coding downstream 3956409 32462425 ~ 32476477 (+)
G962327 NA non-coding upstream 20117 28477036 ~ 28478993 (+)
G962324 LOC108280341 non-coding upstream 24719 28473783 ~ 28474391 (+)
G962318 NA non-coding upstream 37455 28460634 ~ 28461655 (+)
G962317 NA non-coding upstream 40045 28458673 ~ 28459065 (+)
G962418 NA non-coding downstream 109892 28615908 ~ 28616493 (+)
G962981 NA non-coding downstream 215164 28721180 ~ 28722160 (+)
G963007 NA non-coding downstream 231330 28737346 ~ 28737567 (+)
G963044 NA non-coding downstream 256399 28762415 ~ 28762633 (+)
G963056 NA non-coding downstream 267348 28773364 ~ 28773575 (+)
G962100 NA other upstream 269709 28227528 ~ 28229401 (+)
G961984 NA other upstream 557535 27897166 ~ 27941575 (+)
G961864 NA other upstream 669933 27828746 ~ 27829177 (+)
G965838 NA other downstream 2312822 30818838 ~ 30821252 (+)
LOC110536614 LOC106578612 other downstream 4878027 33383589 ~ 33386375 (+)
LOC110535592 lmbr1 other downstream 4952345 33411705 ~ 33473890 (+)
G969455 LOC106578609 other downstream 5097031 33603047 ~ 33603674 (+)
G969456 LOC106578609 other downstream 5098497 33604513 ~ 33604810 (+)

Expression


Co-expression Network