LOC110535568 (LOC106578592)


Basic Information

Item Value
gene id LOC110535568
gene name LOC106578592
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 31088864 ~ 31169983 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620633.2
ACAGTGAAGCGCAGTTGAGGAACAGCCTTGAAGCGCTTTTGGAACTGCTGCAGTGAACGAACGGATACACTTCGCCCTCATCTCAGCACTCGCCACTTCGCTATCGTAGGATTTCTCAAACAGAAAAATAACTTCCGTGGAAGATACTGGCTGGATCTGAGGCCCTAAAGGCAGACTGATGGcccatgctgctgctgcagacCTATACCCAGACCAGGAGGAGTGACCCAATGACTAAATGTCTGACTAAAGACCACTGATCATTTCAAACTAACACCCAGAGGGAAGAGACCATAAACTACAATCAAGCTGTGGTTGAAGCTTTGTAACTATTGACCTGGCAGTCATGTTGAGAGGCAGAACTGTCCTTCTCCTGCTGGTCCTCTGGGCGTACCTTTGTTCCCATGGGGACGGGCTGCGTGCCCTGAAGAGGACTACAGGGGGTCGGCGGGGGGTGGCGTTGACGCTGACGGGGCAGGATGCCAACGGAGTGCCTCTGAGACGCTCCAAACGAGGATGGATGTGGAATCAGTTCTTCCTGCTGGAGGAGTACACAGGGTTGGATAACCAGTATGTTGGAAAGCTCCACTCAGACGGGGACCGGGGTGACGGTAGCATACGGTACGTCCTGACTGGCGACGGAGCCGGTACTCTGTTCATCATTGATGAGAACTCAGGAGATATCCACGCCACTAAGAGGCTAGACCGGGAGGAGAAGGCCTACTACACACTCCGGGCCAAAGCCGTCAACAGAATCACTAACACCTCTCTAGAGGGAGAGTCAGAGTTTATTATCAAGATCCATGACATCAACGACAATGAACCCAAGTTTACCAAGGATCCCTACTTCACACACGTACCTGAGATGTCCCCATTGGGCACAGTGGTGATGCAGGTGACCGCTACAGACGCTGACGACGCCACGTATGGTAACAGTGCCAGGGTGGTCTACAGCATCCTACAGGGACAGCCATACTTCTCTGTAGATCCCAACACAGGTGTGATCAAGACAGCCCTGCCAAACATGGACAGGGAGACGAAGGAGAACTATGTCGTTGTGATCCAGGCTAAAGACATGGCTGGCCAGATGGGGGGACTATCAGGGACCACCACAGTCAGCATCACCCTGTCTGATGTCAATGACAACCCACCACGCTTCCCCAAGAGTCTGTATGAGTTCAAAGCTCCTGAGTCGTCAGAGCCCGGCTCGACGGTGGCCGTGCTGCGAGCTACAGACGCTGACATTGGCAGGAACGCTGAGATGAACTACCGAATCACCAGCAGTGACGGCCCAGCCATGTTCGACATTTCAACCAATAGGAGCACACAGGAGGGTGTCATCACCCTCAGGAAGcCTCTGGACTTTGAGAGGAAGCGGTCGTACACTCTAAGGATCCAGGTGGAGAACTCCAACCCTGACCCACGGTTCCTGCGCTACGCGGCGACCACGGACGAGGCGACGGTCAAGTTGATCGTGGAGGATGTGGACGAGCCGCCGGTGTTCGACCGGGTCAGCTACGTCATGGAGGTCAAAGAGGACTCAGCCGTAGGCACCATCGTCGGATCGGTCAGTGCCACAGACCCAGACAGCAGCCGCAGCCCTGTCAGGTACTCTATTGACCGGCGTACAGACATGGACAGGGTGTTCAACGTGCACCCGGGTAACGGCTCAGTTTTCATGCTAAGGACTCTGGACAGAGAGGAGAACCCTTGGCACAACATCTCTGTCATCGCCACGGAGTTCAACAACCCACGGCTGATTAGCCGCATACCAGTGGACATCAGAGTACTGGACGTTAATGACAACGCTCCTACATTCGCCGCTTACTACGAAACCTTTGTCTGTGAAAACACCAAGGCTAACCAGAGGATTCAGACAGTGAGCGCTAAAGATGCTGACGAGCCTATCGGTGGACACAGATTCTTCTTCAGTCTAGCACACGAGGTCTCAGGGAAAGCCAACTTCACCGTCCGAGACAACAAAGACAACACGGCTGGGATCCTGACCAGAAGGAACAGCTACAGCCGGCTACAGAGGAGCACCTACCTGGTTCCCGTGGTGATATCGGACGGGGACTTTCCCATGCAGAGCAGCACCAACACCCTGACTGTGCGTGTTTGTACCTGCGACCGCGAGGGGAACATGCAGCTGTGTAACCAGGAGGCTCTGGTCCTCACCGCAGGGCTCAGCACTGGAGCCCTCATGGCCATCATCATCTGTGTCCTCATACTTCTCCtaATTGTTGTGCTGTTCGCTGTCCTGAGGAGGCAGCAGAGGAAGAAGGAGCCTCTGATCATCTCCAAAGAGGATGTGAGAGACAATGTCGTCAGCTACAATGATGAGGGGGGCGGAGAGGAGGACACCCAGGCCTTTGATATCGGCACGCTGCGCAACCCGGAGGCTATCGAGGAGACCAAACAGCGCAGGGACATCAAGCCCGAGACCCTGAACCCTCCCGTCCGTCGGACCGTGGTCCTCCCTCCTGCCTACAGGGACAACTCGGACGTCAGGGAATTCATAAACCAAAGGCTCCAGGACAACGACCAGGACCCCACAGCGCCGCCCTATGACTCCCTGGCCACCTACGCCTACGAGGGAAGCGGCTCGGTGGCTGAGTCCCTGAGCTCCCTGGGTTCCGTGACCACGGAGGGAGACCAGGACTATAACTACCTGAGCGAGTGGGGACCCAGGTTTAGAAAACTAGCTGACATGTACGGGGGAGAGGACAGTGACGGCTACAGGGATTCCTAACCAGAGAGAAGGGAGCTCGTAAGAGGAAAAAGGAAAATGTACAACAAACACTCATGCACTAGCTAAAGTGAACTTAACTCCTGGTACTTTGTGAAAGTGGCAAACAATAGAACAAAACAAGAAGGACACAAACAGACAAGGCAGTATTTTTCAAAGTGCTCTTTTGCCGTTGTTGATCACCGTTGATCTTTGACCTCACTGGAGGACCTGGACGACGGCGcttagtggtctctctctctgcaaggCAGCCGGGGACTCATGAGGAAAAGACTTGTCAAGAAGACGCTTCGTTGTATATGGGGGTACTGTACTCTGTGCATCAGGCCCCACATATATCTCTATATACAAACATACTTCTTCTCTTTTGTTTTTCAAAAGCTGCCTGCAATAGAGGGACGAAAAGCAAGCGGTTTTCTGGTGAACTTGAGAGACATCTATGAATTGTTCAGAGTTTCTGGAATGAAAAGCTGCATATTGTGAGATATATCTTAtattgtgtgtatctgtgtattgatACAATATGCTGTACAGTTCTGTTTTGTTATCAGGTTTCTAGCGTCCCATTCCCTTATAGCATTGGCTATGTATGTCACCATTTTCTTTTGAAGTCACATAAAGCCATGCTAAGAGACTGAGGGGttcaaccatagaaatagaatactCTAATTCTATGGGTACAGTCAAAATGGCCACCAGTCCACCGACTGTGGCATccttgacttgaatggggacacCCACTCTACTCATTGAATTTCTATGGGTTGTACGTCACCTTCCTGACCGTCAATAACACCTGATCCACATAGCTTTACatattctgcatcccaaatgacacccattccctatatagtgcaccaggCTACAATAGTGTGCCATTTAGGAGATCATTCTCTGTAGGGGGGAGCTGAAACACCCGGACCAAAAAGCTCCTCAGAGTGCTATCTGAAAAAAACTAATGTCAATAACACTTTGCAATAAGGTACTCTATATAAAGGGTTAATGGAAAGTGTTACCCTAATGAACTGAACATGTTCAAATTAAACATGATTCTTTACTCAGTGTTTTACTTTATGCTTTTCTTGGTTAATTAAACTGAGTAATTGATTGATGGTTGAACATCCATTTGTGATGTGCACACTGACAAAGTTTCCAGGTCTGACATATTGGGACGACAGTATGTGGGGGAGGAAGGCTAGACATTAAGGGTAATATGCCATTTTCAGTTGTAAGAAAGAATGTTGACATTCCGTTGGGATTGTCATTGACATAAGAGGTACAGGTCAACATAATATTGGGATCATAAAATGTTTTgacatatacatatgaaatggtcATTAGATTGGTTTGCCATCATGAAATGGTTTGACATATACATAGTAAGAAAATTGAGCAATTCAAATGAAGCAACTTGCCCAAGGCCAAAACATACAAATTGAACAATAGCATCATTGCAGAAGGATGACATTTAATCAGACATTTCAA

Function

NR:

description
cadherin-6-like

GO: NA

KEGG:

id description
K06798 CDH6; cadherin 6, type 2, K-cadherin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620633.2 True 4234 mRNA 0.50 12 31088864 31169983

Neighbor

gene id symbol gene type direction distance location
LOC118937385 NA coding upstream 2582848 28499110 ~ 28506016 (+)
LOC110536610 NA coding upstream 2596040 28491651 ~ 28492829 (+)
LOC110535556 LOC106578558 coding upstream 2839378 28132122 ~ 28249912 (+)
svila LOC106578556 coding upstream 3077833 27867026 ~ 28011031 (+)
jcada LOC106578555 coding upstream 3243523 27810049 ~ 27845341 (+)
LOC110535570 LOC106578590 coding downstream 583886 31753869 ~ 31790306 (+)
LOC110535575 LOC105028291 coding downstream 1180699 32350682 ~ 32354712 (+)
LOC110535577 LOC106578587 coding downstream 1201478 32371461 ~ 32390805 (+)
LOC110535578 LOC106578586 coding downstream 1292442 32462425 ~ 32476477 (+)
ppp1r3g LOC106578584 coding downstream 1313161 32483144 ~ 32485710 (+)
G966244 NA non-coding upstream 6043 31082605 ~ 31082821 (+)
G966224 NA non-coding upstream 17350 31071273 ~ 31071514 (+)
G965740 NA non-coding upstream 398464 30690135 ~ 30690400 (+)
G965730 NA non-coding upstream 403762 30684777 ~ 30685102 (+)
G965726 NA non-coding upstream 408802 30679766 ~ 30680062 (+)
G966308 NA non-coding downstream 1384 31171367 ~ 31172251 (+)
G966323 NA non-coding downstream 29276 31199259 ~ 31199820 (+)
G966325 drosha non-coding downstream 31691 31201674 ~ 31214886 (+)
G966364 NA non-coding downstream 73243 31243226 ~ 31248411 (+)
G966409 drosha non-coding downstream 126289 31296272 ~ 31301742 (+)
G965838 NA other upstream 267612 30818838 ~ 30821252 (+)
G962100 NA other upstream 2859463 28227528 ~ 28229401 (+)
G961984 NA other upstream 3147289 27897166 ~ 27941575 (+)
G961864 NA other upstream 3259687 27828746 ~ 27829177 (+)
LOC110536614 LOC106578612 other downstream 2214060 33383589 ~ 33386375 (+)
LOC110535592 lmbr1 other downstream 2288378 33411705 ~ 33473890 (+)
G969455 LOC106578609 other downstream 2433064 33603047 ~ 33603674 (+)
G969456 LOC106578609 other downstream 2434530 33604513 ~ 33604810 (+)
G969752 LOC106578632 other downstream 2624392 33794375 ~ 33795061 (+)

Expression


Co-expression Network