LOC110535569 (LOC106578596)


Basic Information

Item Value
gene id LOC110535569
gene name LOC106578596
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 31407966 ~ 31409385 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620635.2
CTGGGATTTATTCTGTTTTCCACCACCTGCCCGACGCTAGACTCTGACTACATCCACAGAGCTGTTCTTTCACAGCAAAGAAAGACAACAAAACAGCAGAATGGAGACAATAAAGTTTCACTTAAACACTACAAGAACCAACTAAGATAACGAACAActacatgatgaattccacagaCCACCAAGGGTTGATCTCTGTGGGCTATACCAGGAACCTCAGCACTGCTGGGACTCTGGGAACCCTCAACAAAGACTCAGAGGGCGTTGGTATCAAGGACTCCTCAACAGGATGTTACGAGCAGCTCCTCATCTCTACCGAGGTCTTTCTCACACTGGGGATAGTCAGTTTATTAGAGAACATCCTGGTGATTGCTGCCATCATCAAGAATAAGAATCTTCACTCTCCCATGTACTTATTCATCTGTTCTTTGGCTGTGGCAGACATGCTGGTCAGCGTCTCCAACGCCTCCGAGACCATCGTCATCGCCCTGATCAACGGCGGCAACTTGACCATCTCCGGGTCGCTCATAAAGAGCATGGACAACGTGTTCGACTCCATGATCTGTAGCTCACTGCTGGCGTCAATCTGTAGTCTCTTGGCCATCGCCATAGACCGCTACATCACCATATTCTACGCGCTGCGCTACCATAACATTGTGACGGTAAAGCGAGCGATGGCGGTAATCGCGTGCATCTGGTCGTGTTGTGTGGCATCGGGCGTGCTCTTCATTATCTACTCTGAGAGCACCACGGTCCTCATCTGCCTCATCACCATGTTCTTCACCATGCTGGCGCTCATGGCCTCTCTCTACGTCCACATGTTCATGCTGGCCCGCCTGCACATAAAGAGGATTGCCGTGCTGCCCGGGAACGTTCCCATCCGCCAGCGTGCCAACATGAAGGGCGCCATCACCCTCACCATCCTCCTGGGTGTGTTCGTAGTATGCTGGGctccctttttcctccacctCATCCTCATGATATCATGCCCCAGGAACCCCTACTGTGCCTGCTTCATGTCACACTTCAACATGTACCTCATCCTcatcatgtgtaactctgtcatCGACCCACTGATCTACGCCTTCAGGAGCCAAGAGATGAGGAAGACCTTTAAGGAAATCTTCTGCTGGTACAGTCTGCCAAACCTGTGTGTGTGCGAGCTGCCAGGGAAATATTGAACTACCGAACAGCTGTCAGAGACCCAGTAAGTGTGACAACTGCTGAGGTAGCATCTGCGTCTGTGTCTCGTCACATGAAAGAGATGAATGGTTGTATAGGCTACATTATGGTGTAACGGTGTAAATAAGATAAGATGTTTTTTTATTgccaccagataggtgcagtttAAATGTGTtgctttacagggtcagccatagtagtacagagCCCTTGGATAGaattaggtttaagtgccttg

Function

NR:

description
melanocortin receptor 4-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0040008 regulation of growth biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004977 melanocortin receptor activity molecular_function

KEGG:

id description
K04202 MC4R; melanocortin 4 receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620635.2 True 1420 mRNA 0.49 1 31407966 31409385

Neighbor

gene id symbol gene type direction distance location
drosha drosha coding downstream 79342 31171381 ~ 31328624 (-)
LOC110535566 LOC106578577 coding downstream 1347006 29998321 ~ 30060960 (-)
LOC110535564 LOC106578565 coding downstream 1691108 29508154 ~ 29716858 (-)
LOC110535563 LOC106578564 coding downstream 2096719 28934468 ~ 29311247 (-)
LOC110535562 LOC106578563 coding downstream 2864413 28508814 ~ 28543553 (-)
LOC110535571 LOC106578589 coding upstream 444412 31853797 ~ 31908264 (-)
LOC110535572 LOC106578588 coding upstream 836081 32245466 ~ 32258407 (-)
LOC110535574 peci coding upstream 889017 32298402 ~ 32314875 (-)
LOC110536613 NA coding upstream 1024643 32434028 ~ 32435451 (-)
LOC110535581 LOC106578582 coding upstream 1079810 32489195 ~ 32549643 (-)
G966719 NA non-coding downstream 1098 31406479 ~ 31406868 (-)
G966718 NA non-coding downstream 2590 31404244 ~ 31405376 (-)
G966529 NA non-coding downstream 159745 31243022 ~ 31248221 (-)
G966515 NA non-coding downstream 189915 31211516 ~ 31218051 (-)
G966254 NA non-coding downstream 320747 31087019 ~ 31087219 (-)
G966723 NA non-coding upstream 6853 31416238 ~ 31416477 (-)
G966726 NA non-coding upstream 11321 31420706 ~ 31420960 (-)
G966755 NA non-coding upstream 46712 31456097 ~ 31456420 (-)
G966855 NA non-coding upstream 95576 31504961 ~ 31505368 (-)
G966909 NA non-coding upstream 159656 31569041 ~ 31569274 (-)
G966663 LOC100194703 other downstream 16622 31391036 ~ 31391344 (-)
G962982 NA other downstream 2685663 28721646 ~ 28722303 (-)
G961930 LOC106578555 other downstream 3571198 27835966 ~ 27836768 (-)
G961041 LOC107713907 other downstream 4605140 26737174 ~ 26802826 (-)
G960344 LOC106578541 other downstream 5006415 26357045 ~ 26401551 (-)
G967535 NA other upstream 641575 32050960 ~ 32053193 (-)
G968868 NA other upstream 1257367 32666752 ~ 32667490 (-)
G970066 NA other upstream 2465429 33874814 ~ 33875272 (-)
LOC110535616 LOC106578707 other upstream 3400908 34810223 ~ 34978953 (-)

Expression


Co-expression Network