LOC110535572 (LOC106578588)


Basic Information

Item Value
gene id LOC110535572
gene name LOC106578588
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 32245466 ~ 32258407 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620643.2
TGCATACAAGCAAGCCATATCAGAACTTCTTATTGTACATCACTACAAACCAATGTCTACAATTCTATAAGATAAATTATTCAACAACCACGTGGTTGAATTTAACAGAAGTGAGAGGGGAATGAGCAACAAAGGATAAAACACATGTTCAAAAGTAGTTCATCAAATGTGATAGAAAAGGTTTGCAAGCCTTCCACTGTGAGGCACACAGCACAaccccaaataaataaataaaggcaaAGTTAGTGAAACACATGAGTCAGAAGTAGTGAGTTAGTAAAGGGTGGGatcaggagggaggagggaggtataaTTACGGTAAGACACAGGGAGAGgtacagaaggagagagagaaagagagagagagacagcaaagaGAGCCCTGCCCACTCTCACAAAACCATTCAACTTGTGCACAGTGAGCACTCACAGACTTCTACAGAGACCTACTCTTCCCTGGGGTAACCTTCTGAGGACGACTGACCTTCCCACACAAAACCTCCCAAGGATCAGACATAATCTCCACTCCAGCACTGGCAAGACCATCTTCAGTCCACACCTCTCCTTCTTCAGCCATCTCTCCTTTTTAAACACAAGGATTATTCTTTTTCGTTCTCACTTTTAGGTGtcactttttaaacttttattCCAAGTCTTACAGCACTGCTGACTAAATTTATTTTTCCAGAGCTTACCTTGTCTGGAGGAGTTTTTAAAATCTCTTTTGGCAGAAGGACTGATATTTTTCCCCCACTCTCATCATTTCGCCTACTAGTTGGTGCTCGCTGCGCTGCTCTCTACGTTGTCCCGGCAGCAGACCTGTCTAGTCCAGGATGTCTCCTTTGCCCCTGCTGAGTGGGATGTTGCTACTCTTTGCCCATAGCTGTGGCGGGGCCGGCTCTTTGTCCGTGGCGATGGGTGGTGGCCAGACGCCACCACAGACCCAGTCCCAGCTGGTGCCGGAGGTTACCGACTGCCCTTCCTGCGCCCTGGCGCGGCTCAACGAGGAGGAGGATGGCAGCAAACCCGAGGTGGTGGAGGCAGTGAAGAGACACATCCTCAACATGCTGCACCTGCAGGTGCGGCCCAATGTCACGCACCCGGTGCCCCGCGCTGCTCTGCTCAATGCCATCCGCAAGCTGCACGTGGGAAGAGTGGCCGAGGACGGCAGCGTCCAGATCGAGGACGGGGGCCACGGGCGCCCAGATGCTGCCGACATGGTCGAGACGACTGAGATCCTTACCTTCGCAGAGGCCGGCGACTCCCAGGGTGCGGTCAACTTCCTCATTTCCAAGGAGGGCGGTGAGCTGTCTCTGGTGGAGCAGGCTAATGTATGGATCTTCCTCCGGCTGGCCAAGACCAATCGCAGCCGTGCCAAGGTCACTATACTCCTGTTGCAGCAGCGCCATGGCGAAGACGGCCATGAAGAGTCTGTGCTACTGGCCGAGAAGGCAGTGGACACACGGCGCAGTGGCTGGCACACTTTTCCCGTGTCAGCCAGCGTCCAGGCCCTGTTGAAGGGTGGCGGAAGCATGCTCAGTGTGAAGATCTCCTGCCCGCTGTGCGCCAATGCTGGCGCCACACCCATCCTGGTGTCAACCAGCGGCAACCAGGAGCGTGAGCAGTCCCACCGGCCCTTTCTCATGGCGGTAGTGCAGCAGGGCGAGGGCGGCGAGCCACGGCGACGCCCCAAAAGGGGCCTGGAATGCGACGGCAAGGTGCGTGCTTGCTGCAAGCGCCAGTTCTATGTCAATTTCAAGGACATTGGCTGGAGCGACTGGATCATAGCACCGGGGGGCTACCACGCAAACTACTGCGAGGGCGACTGCCCCAGCCACGTGGCCAGCATCACaggctcctctctgtccttccacTCCACCGTCATCAATCACTACCGCATACGGGGCTACGCGCCCTTCCAGAACATTAAGTCGTGCTGCGTGCCCACGAGGCTACGCGCCATGTCTATGCTCTACTACAATGAGGAGCAAAAGATTGTCAAAAAAGACATTCAGAACATGGTCGTAGAGGAGTGTGGCTGCTCGTAAAAGCCTGGCGGAGCTGGTGGGGCTTGGAAGTTGGTCTCATGCCCAGAGAGACAGAACTAAACGGAAGAggccctttatctctctctctcgcttgcgtGCAAGACACTGTCAAGACCGACTTTTATTTGGACTCAATGACTGGCTTGTTCTCCATCGTTGGCAAGTCCAGGGGGTATCTATAACTCAGAGAAATCTCTGTGGCACtttcaaaaaaaatacaaataatatctaatatatttttgttacaaaacaaagggagggaggtgagaggataTTTATGTGACCCAGATGCGGTGTAGTTGCTCCTTTCATGTACTGCAAGATGAGAGACCATGCGACCATGAGACCAGGTGCCtgaaaaatatacagttgaagttggaaatttacatacaccttagccaaatacatttaaactcaggttttcacaattcctgacatttaatcctagtaaaaattccctgtcttaggtcagttagg

Function

NR:

description
inhibin beta A chain-like

GO:

id name namespace
GO:0031101 fin regeneration biological_process
GO:0005576 extracellular region cellular_component
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K04667 INHBA; inhibin beta A chain

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620643.2 True 2525 mRNA 0.52 2 32245466 32258407

Neighbor

gene id symbol gene type direction distance location
LOC110535571 LOC106578589 coding downstream 337202 31853797 ~ 31908264 (-)
LOC110535569 LOC106578596 coding downstream 836081 31407966 ~ 31409385 (-)
drosha drosha coding downstream 916842 31171381 ~ 31328624 (-)
LOC110535566 LOC106578577 coding downstream 2184506 29998321 ~ 30060960 (-)
LOC110535564 LOC106578565 coding downstream 2528608 29508154 ~ 29716858 (-)
LOC110535574 peci coding upstream 39995 32298402 ~ 32314875 (-)
LOC110536613 NA coding upstream 175621 32434028 ~ 32435451 (-)
LOC110535581 LOC106578582 coding upstream 230788 32489195 ~ 32549643 (-)
LOC110535582 LOC106578581 coding upstream 436955 32695362 ~ 32702585 (-)
LOC110536595 LOC106578630 coding upstream 463866 32722273 ~ 32749027 (-)
G967632 NA non-coding downstream 115719 32080024 ~ 32129747 (-)
G967384 NA non-coding downstream 320605 31911392 ~ 31924861 (-)
G967350 NA non-coding downstream 412415 31832834 ~ 31833051 (-)
G967343 NA non-coding downstream 433775 31811483 ~ 31811691 (-)
G967340 NA non-coding downstream 440901 31804307 ~ 31804565 (-)
G968656 LOC100136012 non-coding upstream 59893 32318300 ~ 32342920 (-)
G968709 NA non-coding upstream 146973 32405380 ~ 32405699 (-)
G968711 NA non-coding upstream 158277 32416684 ~ 32416909 (-)
G968717 NA non-coding upstream 168784 32427191 ~ 32427577 (-)
G968720 NA non-coding upstream 170193 32428600 ~ 32429000 (-)
G967535 NA other downstream 192273 32050960 ~ 32053193 (-)
G966663 LOC100194703 other downstream 854122 31391036 ~ 31391344 (-)
G962982 NA other downstream 3523163 28721646 ~ 28722303 (-)
G961930 LOC106578555 other downstream 4408698 27835966 ~ 27836768 (-)
G961041 LOC107713907 other downstream 5442640 26737174 ~ 26802826 (-)
G968868 NA other upstream 408345 32666752 ~ 32667490 (-)
G970066 NA other upstream 1616407 33874814 ~ 33875272 (-)
LOC110535616 LOC106578707 other upstream 2551886 34810223 ~ 34978953 (-)
G971137 NA other upstream 2578565 34836972 ~ 34838926 (-)

Expression


Co-expression Network