XLOC_028372 (dynlt1)


Basic Information

Item Value
gene id XLOC_028372
gene name dynlt1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 386435 ~ 390442 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055107
AACAAGCAAACATGGACGACGATCAGACAGTAGAAGAGAGCGCGTTTATAGTGGACGAAGTGAGCAGCATCGTGAAAGAGGCGAAAGCGGTGATCGGCAGAAACATGTATGAACACAATCGTGTGAGCCAGTGGACGTCCAGTGTGGCGGAGCAGTGTCTCGGGCAGCTCAGCAAACTAGGCAAACCCTTCAAATACATCGTCACGTGCATCATCATGCAGAAGAACGGCGCTGGCCTTCAGTCGGCCTCCTCCTGCTTCTGGGACAACACCACAGACGGGAGCTGCACAGTCAGATGGGAGAATAAACACCTCTACTGCATCGTCAGTGTTTTCGGACTCGCCATCTAGTGgatttacaacacacacacacacacacacacacacacacgcacgcacgcacgcacgcacgcacgcacgcacgcacgcacgcacgcacgcacgtacgtacgcacgcacacacacacacacgcacacacacacagtcacacacacccacacccacaaacAATCACACACAAATAGTCACATACAAGTAcaattacatacacacacacacacacacacaatcacaaataCACACccagtctctctcacacacacatacacacagtcacacaaacacacatacacacacagtcacacaaacacacatccacaATCACAAACAGTACAACACATACAAGTACAATCACATATACATAAACAcccacacaatcacacacacacacacacacacacacccatacacacacaatcacaaacacacacccaccctctttctctcacacacacacacacacacaggcacgcgcactaaaagaaaaaaacacacccACAATTTCAAATACACACTCACAgacgcacacaaacactcacaatcACAAATACACaaccaaccacacacacacacaatcacaacacacacaatcacacctataactacaaaaaaaaaaacaaatacacaaccagacacacaaacactcaatCACAAATGCACAACCAATAaaccaatcacacacacaatcacaaacccacattcacacacacacaatcaca
>TCONS_00055108
ATGGACGACGATCAGACAGTAGAAGAGAGCGCGTTTATAGTGGACGAAGTGAGCAGCATCGTGAAAGAGTCTCTAGAAGCGGTGATCGGCAGAAACATGTATGAACACAATCGTGTGAGCCAGTGGACGTCCAGTGTGGCGGAGCAGTGTCTCGGGCAGCTCAGCAAACTAGGCAAACCCTTCAAATACATCGTCACGTGCATCATCATGCAGAAGAACGGCGCTGGCCTTCAGTCGGCCTCCTCCTGCTTCTGGGACAACACCACAGACGGGAGCTGCACAGTCAGATGGGAGAATAAACACCTCTACTGCATCGTCAGTGTTTTCGGACTCGCCATCTAG

Function

symbol description
dynlt1 Enables identical protein binding activity. Involved in intracellular transport of viral protein in host cell. Located in cytoplasmic microtubule and secretory vesicle. Part of cytoplasmic dynein complex.

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-041210-9 Predicted to enable dynein intermediate chain binding activity. Predicted to be involved in microtubule-based movement. Predicted to be part of cytoplasmic dynein complex. Predicted to be active in cytoplasm. Orthologous to human DYNLT1 (dynein light chain Tctex-type 1).

Ensembl:

ensembl_id ENSDARG00000045909

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055107 False 1058 mRNA 0.47 5 386435 390442
TCONS_00055108 True 342 mRNA 0.53 5 387143 390431

Neighbor

gene id symbol gene type direction distance location
XLOC_028371 mrps10 coding downstream 55687 325028 ~ 330748 (-)
XLOC_028370 echdc3 coding downstream 99010 286425 ~ 287425 (-)
XLOC_028369 si:ch73-252i11.1 coding downstream 109354 269443 ~ 277081 (-)
XLOC_028368 RERG coding downstream 145698 233812 ~ 240737 (-)
XLOC_028367 ptpro coding downstream 174721 190547 ~ 211714 (-)
XLOC_028373 NA coding upstream 3109 393551 ~ 396819 (-)
XLOC_028374 rtcb coding upstream 286268 676710 ~ 685433 (-)
XLOC_028375 CU855889.2 coding upstream 311170 701612 ~ 734347 (-)
XLOC_028376 NA coding upstream 333388 723830 ~ 732484 (-)
XLOC_028377 agbl5 coding upstream 347097 737539 ~ 760560 (-)
XLOC_028362 NA non-coding downstream 267241 116322 ~ 119194 (-)
XLOC_028360 NA non-coding downstream 285058 99991 ~ 101377 (-)
XLOC_028359 NA non-coding downstream 311827 73430 ~ 74608 (-)
XLOC_028358 NA non-coding downstream 313777 71463 ~ 72658 (-)
XLOC_028357 NA non-coding downstream 321732 56025 ~ 64703 (-)
XLOC_028383 NA non-coding upstream 509520 899962 ~ 904022 (-)
XLOC_028385 NA non-coding upstream 529310 919752 ~ 921761 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01154342_00000869_00001371 DYLT1, DYNLT1, BRAFLDRAFT_78772 coding CI01154342 null 869 ~ 1454 (+)