LOC110535575 (LOC105028291)


Basic Information

Item Value
gene id LOC110535575
gene name LOC105028291
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 32350682 ~ 32354712 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620651.2
ACTGAACTCTATTGCACGGCTGGCATGTCATTTTCTTGTACTTTTGAGCAGAGGAGAAGACCGGAATTGAGCTCTTACAAATCAATTGCGTTTAACCGGGCGCACACTGCGAGAATGAGAGAAATAGTTCACATACAAGCCGGACAATGTGGGAATCAGATTGGCACCAAGTTTTGGGAAATTATCAGCGATGAACACGGAATCGATCCGGCAGGAAACTATGTGGGTGACTCATCACTTCAAATCGACAGGATTAATGTGTATTACAACGAAGCGTCCTCACACAAGTATGTTCCCAGAGCAATCCTTGTGGACTTGGAACCTGGGACCATGGACAGTGTCCGGTCAGGGACCTTTGGACAGCTATTCAGACCTGACAACTTTATCTTCGGGCAGACAGGTGCAGGGAACAACTGGGCCAAGGGCCACTACACTGAGGGAGCAGAGCTAGTAGACTCTGTGCTGGAAGTGGTGAGGAAGGAGTGCGAGAACTGCGACTGCCTCCAGGGCTTCCAGCTAACCCACTCCCTGGGTGGGGGCACAGGCTCGGGCATGGGCACTCTGCTCATCAGCAAGATCCGCGAGGAGTACCCCGACCGCATCATGAACACGTTCAGCGTCATGCCCTCTCCCAAGGTGTCGGATACGGTGGTTGAACCGTACAATGCCACCCTCTCTGTGCACCAGCTGGTGGAGAACACGGACGAGACATACTGCATTGACAACGAGGCACTCTACGACATCTGCTTCCGTACCCTGAAACTGACCACGCCCACTTACGGAGACCTCAACCATCTGGTGTCGGCCACCATGAGCGGCGTGACCACCTCACTGCGGTTCTCCGGTCAGCTCAACGCCGACCTTCGCAAACTGGCCGTCAACATGGTGCCCTTCCCCCGCATGCACTTCTTCATGCCTGGCTTTGCACCGCTAACCGCCCGAGGGAGCCAGCAGTACCGCGCCCTGACGGTGCCGGAACTCACCCAGCAGATGTTCGATGCCCGCAACATGATGGCGGCGTGCGACCCACATCACGGCCGCTACCTCACCGTGGCCACTGTATTCCGCGGGCCCATGTCCATGAAGGAGGTGGATGAGCAGATGCTGGCCATCCAGAACAAGAACAGCAGCTACTTCGTGGAGTGGATCCCCAATAATGTCAAGGTGGCCGTGTGTGACATCGCACCCCGCGGCCTCAAGATGGCCTCCACATTCATCGGCAACAGTACAGCCATCCAGGAGCTGTTCAAGCGCGTCTCGGAGCAGTTCTCGGCCATGTTCCGCCGCAAGGCCTTTCTGCACTGGTTCACCGGGGAGGGCATGGACGAGATGGAGTTCACTGAGGCAGAGAGCAACATGAACGACCTAGTGTCTGAGTACCAACAGTACCAGGAGGCCACGGTCAATGACGGGGAAGAGACATTTGACGATGAGGAAGAAGAGCTCAATGAGTAAGGAGAATGTGGACAGAATTTGTTTTGAAGTGTACTGTCACGGAAGCAGTGGTGGAAATAAAGTCTTTGAAACAAATGTGTTACGTTTTCATCTGGGGGTGCTTTGTGATATGTTGTGTATTTTCAAATCCGTATGTACTTTTCTCAATTCATGTTGGTTGTGGGCATGATATGTTTGATGGTTGCTGCGTATTTGATTGGCACATTGGGAGGCTGATTTGCAAAGCTTCTGCTCTAGTCTCGTTCAAAGGGGATGGAAGACAAAAACAAAGGCAAAACATGAAACTGTCTTGATTAACTTTCCCATGTCTATCTTTCTTTTGGCTTCAACTGTTGTGGTTGTATACCCATTAGAATATAACATGTTCCTATTTACATCTTGGTCTCTCTcataaaataagttacaaaccTCAAGGGACTcttcctggataaataaaggttattCTATTGCATGACTATGATGATGGAAAATACAGAAAAGTGCATTGTCAATAGTTTGCTAATCATTCTCGCTCCATTTTGTTTAGACTTTATTAACTCGCAGTTCTATTTAGGGGATTAAGAAAGGGAACCAGCCATTAGAGCTATTCATGGCCTCAATGAGTCTTCTGCAATACACGTACTAGCTAACTGCCCCAGTCCACTGCTAAATATTAGAGGCATTGATGTGAAAAAAAGATACACAAGTAGCCTATGTGTGAAAAACTGTACAACTTCAATAAACTTCACAAATGTGAAAAAACAAACTGGAA
>XM_036935304.1
CTGGCATGTCATTTTCTTGTACTTTTGAGCAGAGGAGAAGACCGGAATTGAGCTCTTACAAATCAATTGCGTTTAACCGGGCGCACACTGCGAGAATGAGAGAAATAGTTCACATACAAGCCGGACAATGTGGGAATCAGATTGGCACCAAGCACACAAGTATGTTCCCAGAGCAATCCTTGTGGACTTGGAACCTGGGACCATGGACAGTGTCCGGTCAGGGACCTTTGGACAGCTATTCAGACCTGACAACTTTATCTTCGGGCAGACAGGTGCAGGGAACAACTGGGCCAAGGGCCACTACACTGAGGGAGCAGAGCTAGTAGACTCTGTGCTGGAAGTGGTGAGGAAGGAGTGCGAGAACTGCGACTGCCTCCAGGGCTTCCAGCTAACCCACTCCCTGGGTGGGGGCACAGGCTCGGGCATGGGCACTCTGCTCATCAGCAAGATCCGCGAGGAGTACCCCGACCGCATCATGAACACGTTCAGCGTCATGCCCTCTCCCAAGGTGTCGGATACGGTGGTTGAACCGTACAATGCCACCCTCTCTGTGCACCAGCTGGTGGAGAACACGGACGAGACATACTGCATTGACAACGAGGCACTCTACGACATCTGCTTCCGTACCCTGAAACTGACCACGCCCACTTACGGAGACCTCAACCATCTGGTGTCGGCCACCATGAGCGGCGTGACCACCTCACTGCGGTTCTCCGGTCAGCTCAACGCCGACCTTCGCAAACTGGCCGTCAACATGGTGCCCTTCCCCCGCATGCACTTCTTCATGCCTGGCTTTGCACCGCTAACCGCCCGAGGGAGCCAGCAGTACCGCGCCCTGACGGTGCCGGAACTCACCCAGCAGATGTTCGATGCCCGCAACATGATGGCGGCGTGCGACCCACATCACGGCCGCTACCTCACCGTGGCCACTGTATTCCGCGGGCCCATGTCCATGAAGGAGGTGGATGAGCAGATGCTGGCCATCCAGAACAAGAACAGCAGCTACTTCGTGGAGTGGATCCCCAATAATGTCAAGGTGGCCGTGTGTGACATCGCACCCCGCGGCCTCAAGATGGCCTCCACATTCATCGGCAACAGTACAGCCATCCAGGAGCTGTTCAAGCGCGTCTCGGAGCAGTTCTCGGCCATGTTCCGCCGCAAGGCCTTTCTGCACTGGTTCACCGGGGAGGGCATGGACGAGATGGAGTTCACTGAGGCAGAGAGCAACATGAACGACCTAGTGTCTGAGTACCAACAGTACCAGGAGGCCACGGTCAATGACGGGGAAGAGACATTTGACGATGAGGAAGAAGAGCTCAATGAGTAAGGAGAATGTGGACAGAATTTGTTTTGAAGTGTACTGTCACGGAAGCAGTGGTGGAAATAAAGTCTTTGAAACAAATGTGTTACGTTTTCATCTGGGGGTGCTTTGTGATATGTTGTGTATTTTCAAATCCGTATGTACTTTTCTCAATTCATGTTGGTTGTGGGCATGATATGTTTGATGGTTGCTGCGTATTTGATTGGCACATTGGGAGGCTGATTTGCAAAGCTTCTGCTCTAGTCTCGTTCAAAGGGGATGGAAGACAAAAACAAAGGCAAAACATGAAACTGTCTTGATTAACTTTCCCATGTCTATCTTTCTTTTGGCTTCAACTGTTGTGGTTGTATACCCATTAGAATATAACATGTTCCTATTTACATCTTGGTCTCTCTcataaaataagttacaaaccTCAAGGGACTcttcctggataaataaaggttattCTATTGCATGACTATGATGATGGAAAATACAGAAAAGTGCATTGTCAATAGTTTGCTAATCATTCTCGCTCCATTTTGTTTAGACTTTATTAACTCGCAGTTCTATTTAGGGGATTAAGAAAGGGAACCAGCCATTAGAGCTATTCATGGCCTCAATGAGTCTTCTGCAATACACGTACTAGCTAACTGCCCCAGTCCACTGCTAAATATTAGAGGCATTGATGTGAAAAAAAGATACACAAGTAGCCTATGTGTGAAAAACTGTACAACTTCAATAAACTTCACAAATGTGAAAAAACAAACTGGAA
>XM_021620652.2
ATTTTCTTGTACTTTTGAGCAGAGGAGAAGACCGGAATTGAGCTCTTACAAATCAATTGCGTTTAACCGGGCGCACACTGCGAGAATGAGAGAAATAGTTCACATACAAGCCGGACAATGTGGGAATCAGATTGGCACCAAGTTTTGGGAAATTATCAGCGATGAACACGGAATCGATCCGGCAGGAAACTATGTGGGTGACTCATCACTTCAAATCGACAGGATTAATGTGTATTACAACGAAGCGTCCTGTAACACACAAGTATGTTCCCAGAGCAATCCTTGTGGACTTGGAACCTGGGACCATGGACAGTGTCCGGTCAGGGACCTTTGGACAGCTATTCAGACCTGACAACTTTATCTTCGGGCAGACAGGTGCAGGGAACAACTGGGCCAAGGGCCACTACACTGAGGGAGCAGAGCTAGTAGACTCTGTGCTGGAAGTGGTGAGGAAGGAGTGCGAGAACTGCGACTGCCTCCAGGGCTTCCAGCTAACCCACTCCCTGGGTGGGGGCACAGGCTCGGGCATGGGCACTCTGCTCATCAGCAAGATCCGCGAGGAGTACCCCGACCGCATCATGAACACGTTCAGCGTCATGCCCTCTCCCAAGGTGTCGGATACGGTGGTTGAACCGTACAATGCCACCCTCTCTGTGCACCAGCTGGTGGAGAACACGGACGAGACATACTGCATTGACAACGAGGCACTCTACGACATCTGCTTCCGTACCCTGAAACTGACCACGCCCACTTACGGAGACCTCAACCATCTGGTGTCGGCCACCATGAGCGGCGTGACCACCTCACTGCGGTTCTCCGGTCAGCTCAACGCCGACCTTCGCAAACTGGCCGTCAACATGGTGCCCTTCCCCCGCATGCACTTCTTCATGCCTGGCTTTGCACCGCTAACCGCCCGAGGGAGCCAGCAGTACCGCGCCCTGACGGTGCCGGAACTCACCCAGCAGATGTTCGATGCCCGCAACATGATGGCGGCGTGCGACCCACATCACGGCCGCTACCTCACCGTGGCCACTGTATTCCGCGGGCCCATGTCCATGAAGGAGGTGGATGAGCAGATGCTGGCCATCCAGAACAAGAACAGCAGCTACTTCGTGGAGTGGATCCCCAATAATGTCAAGGTGGCCGTGTGTGACATCGCACCCCGCGGCCTCAAGATGGCCTCCACATTCATCGGCAACAGTACAGCCATCCAGGAGCTGTTCAAGCGCGTCTCGGAGCAGTTCTCGGCCATGTTCCGCCGCAAGGCCTTTCTGCACTGGTTCACCGGGGAGGGCATGGACGAGATGGAGTTCACTGAGGCAGAGAGCAACATGAACGACCTAGTGTCTGAGTACCAACAGTACCAGGAGGCCACGGTCAATGACGGGGAAGAGACATTTGACGATGAGGAAGAAGAGCTCAATGAGTAAGGAGAATGTGGACAGAATTTGTTTTGAAGTGTACTGTCACGGAAGCAGTGGTGGAAATAAAGTCTTTGAAACAAATGTGTTACGTTTTCATCTGGGGGTGCTTTGTGATATGTTGTGTATTTTCAAATCCGTATGTACTTTTCTCAATTCATGTTGGTTGTGGGCATGATATGTTTGATGGTTGCTGCGTATTTGATTGGCACATTGGGAGGCTGATTTGCAAAGCTTCTGCTCTAGTCTCGTTCAAAGGGGATGGAAGACAAAAACAAAGGCAAAACATGAAACTGTCTTGATTAACTTTCCCATGTCTATCTTTCTTTTGGCTTCAACTGTTGTGGTTGTATACCCATTAGAATATAACATGTTCCTATTTACATCTTGGTCTCTCTcataaaataagttacaaaccTCAAGGGACTcttcctggataaataaaggttattCTATTGCATGACTATGATGATGGAAAATACAGAAAAGTGCATTGTCAATAGTTTGCTAATCATTCTCGCTCCATTTTGTTTAGACTTTATTAACTCGCAGTTCTATTTAGGGGATTAAGAAAGGGAACCAGCCATTAGAGCTATTCATGGCCTCAATGAGTCTTCTGCAATACACGTACTAGCTAACTGCCCCAGTCCACTGCTAAATATTAGAGGCATTGATGTGAAAAAAAGATACACAAGTAGCCTATGTGTGAAAAACTGTACAACTTCAATAAACTTCACAAATGTGAAAAAACAAACTGGAA

Function

NR:

description
tubulin beta chain-like isoform X2

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0051258 protein polymerization biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620651.2 False 2206 mRNA 0.49 4 32350682 32354712
XM_036935304.1 False 2078 mRNA 0.50 3 32350701 32354712
XM_021620652.2 True 2181 mRNA 0.49 4 32350711 32354712

Neighbor

gene id symbol gene type direction distance location
LOC110535570 LOC106578590 coding upstream 561332 31753869 ~ 31790306 (+)
LOC110535568 LOC106578592 coding upstream 1180699 31088864 ~ 31169983 (+)
LOC118937385 NA coding upstream 3844666 28499110 ~ 28506016 (+)
LOC110536610 NA coding upstream 3857858 28491651 ~ 28492829 (+)
LOC110535556 LOC106578558 coding upstream 4101196 28132122 ~ 28249912 (+)
LOC110535577 LOC106578587 coding downstream 16749 32371461 ~ 32390805 (+)
LOC110535578 LOC106578586 coding downstream 107713 32462425 ~ 32476477 (+)
ppp1r3g LOC106578584 coding downstream 128432 32483144 ~ 32485710 (+)
fars2 fars2 coding downstream 194777 32549489 ~ 32665562 (+)
LOC110535587 LOC106578620 coding downstream 483388 32838100 ~ 32859519 (+)
G967786 NA non-coding upstream 43096 32303841 ~ 32307586 (+)
G967583 NA non-coding upstream 249992 32096547 ~ 32100690 (+)
G967550 NA non-coding upstream 286804 32063536 ~ 32063878 (+)
G967538 NA non-coding upstream 296159 32054291 ~ 32054523 (+)
G967495 NA non-coding upstream 325580 32024882 ~ 32025102 (+)
G967948 NA non-coding downstream 38174 32392886 ~ 32393748 (+)
G967947 NA non-coding downstream 40644 32395356 ~ 32396377 (+)
G967975 NA non-coding downstream 62943 32417655 ~ 32418080 (+)
G967976 NA non-coding downstream 64037 32418749 ~ 32418965 (+)
G967980 NA non-coding downstream 72733 32427445 ~ 32427759 (+)
G965838 NA other upstream 1529430 30818838 ~ 30821252 (+)
G962100 NA other upstream 4121281 28227528 ~ 28229401 (+)
G961984 NA other upstream 4409107 27897166 ~ 27941575 (+)
G961864 NA other upstream 4521505 27828746 ~ 27829177 (+)
LOC110536614 LOC106578612 other downstream 1029331 33383589 ~ 33386375 (+)
LOC110535592 lmbr1 other downstream 1103649 33411705 ~ 33473890 (+)
G969455 LOC106578609 other downstream 1248335 33603047 ~ 33603674 (+)
G969456 LOC106578609 other downstream 1249801 33604513 ~ 33604810 (+)
G969752 LOC106578632 other downstream 1439663 33794375 ~ 33795061 (+)

Expression


Co-expression Network