LOC110536613


Basic Information

Item Value
gene id LOC110536613
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 32434028 ~ 32435451 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002475485.2
gatttttgtattgttgctggttcacatttaAATTAACATGATGAACCTAAactacgctgcgccttggtctactcatTTTGACGAGCGTTACAAtatattgattactttattaAGCCTTTTCTACCATCACTCCCAGCCTGTCTTCAAGACACCACAAATGTGTTGAACAAAATTAAGGATTTGAACCACGACCGTATCTTTAAACATGTCAAAGGATGTGCCATAGGAGGTTGCTACAGCCTTTCCTACGCTGGTTTGTACTCCGattggaatgtccacagtgcaagtTGTTCTAAATTGGACGGACAACTAGACACCTTCAAGGCAGCTAGAGGAACACAAGTACGCCATTCGGGTAGACGTTGAAGACTGCCCCatgcaaggcactacaagtccttacaccatggcGACCCTGCCTCCCTACAAGCTATGGGTAATGATCATGTTCCGGCCTTAATTAGAAAAGGGGATTGTCTTAAACAGCTAAACCAAAGGGAACGTTTTGGggtttacaaactacaggccactaagtatcCTGGTTTAAATTAAGATATAGATTTCTCACCTTTCCTGTAGAGTTGTGAGAGGTCcctttgctgtcatctagtggacataTTGCTCTATTGCCCTCAGCTATGTTTAGACTGCTGTGGTTCATGTTTGCTGTGATCTAGTGTACTATAAAATGGATGGCTCTAATTATTACCACTTTGCCCAGTCAAATTCAAGGTTAGAACTACTTTTCTAGGGGTTCTGATGCTTCTAGTCTTGATTTGCATTttgataacatatctacaatatttCTCATTTAAATGTGTATAATAGTTGTTGTCTAATGAATTctgtaaccactccctcttcaaATCAGGGTTGACTGGAGAAAGCTGTTCGAAAGAGGATATTTTATATCTTTGTACTCCCTGAtaaaggccatgcagccgaaacgcgtcAGGGTTTTTAATCTTTGTTaccattgaacatgccatacaaataaaggcagtTAAttcattatatgaa
>XR_002475486.2
gatttttgtattgttgctggttcacatttaAATTAACATGATGAACCTAAactacgctgcgccttggtctactcatTTTGACGAGCGTTACAAtatattgattactttattaAGCCTTTTCTACCATCACTCCCAGCCTGTCTTCAAGACACCACAAATGTGTTGAACAAAATTAAGGATTTGAACCACGACCGTATCTTTAAACATGTCAAAGGATGTGCCATAGGAGGTTGCTACAGCCTTTCCTACGCTGGTTTGTACTCCGattggaatgtccacagtgcaagtTGTTCTAAATTGGACGGACAACTAGACACCTTCAAGGCAGCTAGAGGAACACAAGTACGCCATTCGGGTAGACGTTGAAGACTGCCCCatgcaaggcactacaagtccttacaccatggcGACCCTGCCTCCCTACAAGCTATGGGGTTGACTGGAGAAAGCTGTTCGAAAGAGGATATTTTATATCTTTGTACTCCCTGAtaaaggccatgcagccgaaacgcgtcAGGGTTTTTAATCTTTGTTaccattgaacatgccatacaaataaaggcagtTAAttcattatatgaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002475485.2 False 1017 mRNA 0.40 3 32434028 32435451
XR_002475486.2 True 582 mRNA 0.42 4 32434028 32435451

Neighbor

gene id symbol gene type direction distance location
LOC110535574 peci coding downstream 119153 32298402 ~ 32314875 (-)
LOC110535572 LOC106578588 coding downstream 175621 32245466 ~ 32258407 (-)
LOC110535571 LOC106578589 coding downstream 525764 31853797 ~ 31908264 (-)
LOC110535569 LOC106578596 coding downstream 1024643 31407966 ~ 31409385 (-)
drosha drosha coding downstream 1105404 31171381 ~ 31328624 (-)
LOC110535581 LOC106578582 coding upstream 53744 32489195 ~ 32549643 (-)
LOC110535582 LOC106578581 coding upstream 259911 32695362 ~ 32702585 (-)
LOC110536595 LOC106578630 coding upstream 286822 32722273 ~ 32749027 (-)
LOC110536597 LOC106578630 coding upstream 332314 32767765 ~ 32796075 (-)
LOC110535590 LOC106578614 coding upstream 818923 33254374 ~ 33320337 (-)
G968722 NA non-coding downstream 2957 32430832 ~ 32431071 (-)
G968720 NA non-coding downstream 5028 32428600 ~ 32429000 (-)
G968717 NA non-coding downstream 6451 32427191 ~ 32427577 (-)
G968711 NA non-coding downstream 17119 32416684 ~ 32416909 (-)
G968709 NA non-coding downstream 28329 32405380 ~ 32405699 (-)
G968748 NA non-coding upstream 42161 32477612 ~ 32480544 (-)
G968749 NA non-coding upstream 47850 32483301 ~ 32486674 (-)
G968751 NA non-coding upstream 51547 32486998 ~ 32488332 (-)
G968844 NA non-coding upstream 201042 32636493 ~ 32666377 (-)
G968875 NA non-coding upstream 247835 32683286 ~ 32683521 (-)
G967535 NA other downstream 380835 32050960 ~ 32053193 (-)
G966663 LOC100194703 other downstream 1042684 31391036 ~ 31391344 (-)
G962982 NA other downstream 3711725 28721646 ~ 28722303 (-)
G961930 LOC106578555 other downstream 4597260 27835966 ~ 27836768 (-)
G961041 LOC107713907 other downstream 5631202 26737174 ~ 26802826 (-)
G968868 NA other upstream 231301 32666752 ~ 32667490 (-)
G970066 NA other upstream 1439363 33874814 ~ 33875272 (-)
LOC110535616 LOC106578707 other upstream 2374842 34810223 ~ 34978953 (-)
G971137 NA other upstream 2401521 34836972 ~ 34838926 (-)

Expression


Co-expression Network