LOC110535578 (LOC106578586)


Basic Information

Item Value
gene id LOC110535578
gene name LOC106578586
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 32462425 ~ 32476477 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620655.2
CCTGATACGCACCATGACCTACAATAAAACTCTGAACTCTGTTCTTACTTCGAATCATTTGATAGATTGTAACATTCTGGGTTCACATTCATATCAGATATATTTATTGAAAAGATAAATGGAGGATAAAGACGAGAACGGACACGCTGTAAAATACTACCGATTGTCGGAAATCGAGGAACGAAATTCATTCAAGAGTACATGGATTATAATCAACCATAAAGTCTACGATGTCACCACATTTTTGGAGGAGCACCCAGGTGGAGAGGAGGTCTTGAGAGAGCAGGCCGGCGGCGATGCCACAGAGAGCTTTGAAGATGTCGGACACTCCTCAGATGCCAGGGAGATGGCTGCCAACATGGTCATTGGAGAACTGCATCCAGATGACCGACTGAAGATTGACAAACCTTCAGAACCACTCAAGGAAACCTCTAGTTGGTGGATAAACTGGTTGATCCCTGGTTTGGCTGCGGCTGTCGTCACGGTGATGTACCAAATGTACACGTCGGAGAAGTGACTGCGCCATCCATTCATCACCTTTGCAAATCAAATGTCAATCAATATAACTGGCTTCAGAATGACCGCTACAGAGCCTGCGTTTGATCCCTGAGAAACCATTGCTGCCTTTTGGGATTTGTACAGCTCATATGCAGTACTATAGTACACAGGATTAATTTAATGTTTTTCATCCAATCGCTCGGCATCATGTCAATGAAGGCATATAATTTTGTTATTGTGTTAACCTTCATTTTCCTCTCCTGATTTACATATTGATATATACAGTCGTGGAAAAAGTAAGTACACCTCCTGgattttttttcatatttttttttaacatataTGGACAAATGGATATGTAATCTTCACTTTAACACTATTGACAGATAAAGGTAACCTAGTTTAACCAATGACACTGAATGATTACTTTGCAATCATTTATTCAT

Function

NR:

description
cytochrome b5-like

GO:

id name namespace
GO:0071466 cellular response to xenobiotic stimulus biological_process
GO:0046872 metal ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K23490 CYB5; cytochrome b5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620655.2 True 944 mRNA 0.40 5 32462425 32476477

Neighbor

gene id symbol gene type direction distance location
LOC110535577 LOC106578587 coding upstream 71620 32371461 ~ 32390805 (+)
LOC110535575 LOC105028291 coding upstream 107713 32350682 ~ 32354712 (+)
LOC110535570 LOC106578590 coding upstream 673075 31753869 ~ 31790306 (+)
LOC110535568 LOC106578592 coding upstream 1292442 31088864 ~ 31169983 (+)
LOC118937385 NA coding upstream 3956409 28499110 ~ 28506016 (+)
ppp1r3g LOC106578584 coding downstream 6667 32483144 ~ 32485710 (+)
fars2 fars2 coding downstream 73012 32549489 ~ 32665562 (+)
LOC110535587 LOC106578620 coding downstream 361623 32838100 ~ 32859519 (+)
LOC110536598 LOC106578619 coding downstream 409310 32869194 ~ 32928578 (+)
LOC110535588 LOC106578617 coding downstream 452743 32929220 ~ 32945244 (+)
G967982 NA non-coding upstream 32923 32429293 ~ 32429502 (+)
G967981 NA non-coding upstream 33150 32428896 ~ 32429275 (+)
G967980 NA non-coding upstream 34666 32427445 ~ 32427759 (+)
G967976 NA non-coding upstream 43460 32418749 ~ 32418965 (+)
G967975 NA non-coding upstream 44345 32417655 ~ 32418080 (+)
G967959 NA non-coding downstream 1145 32477622 ~ 32480568 (+)
G968129 NA non-coding downstream 190332 32666809 ~ 32667565 (+)
G968130 NA non-coding downstream 191189 32667666 ~ 32667918 (+)
G968152 NA non-coding downstream 234459 32710936 ~ 32711888 (+)
G968155 NA non-coding downstream 239164 32715641 ~ 32715992 (+)
G965838 NA other upstream 1641173 30818838 ~ 30821252 (+)
LOC110535556 LOC106578558 other upstream 4212513 28132122 ~ 28249912 (+)
G962100 NA other upstream 4233024 28227528 ~ 28229401 (+)
G961984 NA other upstream 4520850 27897166 ~ 27941575 (+)
G961864 NA other upstream 4633248 27828746 ~ 27829177 (+)
LOC110536614 LOC106578612 other downstream 907566 33383589 ~ 33386375 (+)
LOC110535592 lmbr1 other downstream 981884 33411705 ~ 33473890 (+)
G969455 LOC106578609 other downstream 1126570 33603047 ~ 33603674 (+)
G969456 LOC106578609 other downstream 1128036 33604513 ~ 33604810 (+)
G969752 LOC106578632 other downstream 1317898 33794375 ~ 33795061 (+)

Expression


Co-expression Network