LOC110535581 (LOC106578582)


Basic Information

Item Value
gene id LOC110535581
gene name LOC106578582
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 32489195 ~ 32549643 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620661.2
ACTGGCGCTTACTAACCACATTTAATCGAGGTCCTGAGTACGACCGAAGGTCGGAGTGTTTTTTGCAAGATGGCAGCCTCTACAGCCCAGGTGCTTTCTCTGTATCGCAAGCTTATGAAAGAAAGCAGTAAATTTCCCTCTTATAATTACAGGACGTACGCCTTGCGCCGGGTGCAGGATGCCTTCAGGGCAAACCGGAGTGTAGAAGACCCTAAGATGGTGGAGCAGCTCTTAAACCAGGGCAGGGACAACCTAGACATGATCCGGAGACAGGTTGCCATAGGCAAGATGTACCCGACCCAGAAGACTATTGTTGAGGGGTAGGGTTCGAAGAGAAACCACCGATGGGCATTGATGGAGTGTCTCAGAACGAGAGGAAACGATGCCCAAGAGACCATGGGAAACGGAGCACTGAACCTCAACCTCACTTTCCCTTTCACACAGAAGCTTCATTTTCCGACGCCCTCATTGGATGGATAGGGGGAAAGCCTATGGGTTGGGCCTACTTTGTCCGACATTCTTTACCAGTGTTCCCAACCCTCCACATTTTTGTTCTAGCCCTGCACTGATACACATTATTCAACTAGACAGGGGCTTGCTGATGTAGTTGATAATGTGAATGTGTCAGTGCAGCCCTAAAACAAAATGTGGACTATCTAGCGTTCCCCACgagagggttgggaaacactgccctaaACATTTTGTGATGGACTGTCGTAGATCTGAAAGCATCAGATAggcctacattttttttttgataATGCCACCTAGCCTTTTGGTAGGCAATAAAGATTCTACCATATTGctcacacctttacacacatatatatatatatatatatatatggtaggAAGAGACAAGGGGATGGTTGATTTCCGACTTGGCAACTGTGCAGCGTTGACGACGTAACGATTGTCCTTGGtccctatatactgtaccctCTTCACCATACTAAAATAATGAGCTTCTTTTGTGAGCTGTAAGAGTTGTAGCAGTGCCACGGTGTACACACGGTCTTGATTCCCtgttatatttttctattgtgtgttGTATATATGATTTGTCGTCATGTAAGATGGTGTATAAACAGATTAAAGATATGCGGATCTGAATCGCA
>TU1103679
GTTTTTTGCAAGATGGCAGCCTCTACAGCCCAGGTGCTTTCTCTGTATCGCAAGCTTATGAAAGAAAGCAGTAAATTTCCCTCTTATAATTACAGGACGTACGCCTTGCGCCGGGTGCAGGATGCCTTCAGGGCAAACCGGAGTGTAGAAGACCCTAAGATGGTGGAGCAGCTCTTAAACCAGGGCAGGGACAACCTAGACATGATCCGGAGACAGGTTGCCATAGGCAAGATGTACCCGACCCAGAAGACTATTGTTGAGGGGTAGGGTTCGAAGAGAAACCACCGATGGGCATTGATGGAGTGTCTCAGAACGAGAGGAAACGATGCCCAAGAGACCATGGGAAACGGAGCACTGAACCTCAACCTCACTTTCCCTTTCACACAGAAGCTTCATTTTCCGACGCCCTCATTGGATGGATAGGGGGAAAGCCTATGGGTTGGGCCTACTTTGTCCGACATTCTTTACCAGTGTTCCCAACCCTCCACATTTTTGTTCTAGCCCTGCACTGATACACATTATTCAACTAGACAGGGGCTTGCTGATGTAGTTGATAATGTGAATGTGTCAGTGCAGCCCTAAAACAAAATGTGGACTATCTAGCGTTCCCCACgagagggttgggaaacactgccctaaACATTTTGTGATGGACTGTCGTAGATCTGAAAGCATCAGATAggcctacattttttttttgataATGCCACCTAGCCTTTTGGTAGGCAATAAAGATTCTACCATATTGctcacacctttacacacatatatatatatatatatatatatggtaggAAGAGACAAGGGGATGGTTGATTTCCGACTTGGCAACTGTGCAGCGTTGACGACGTAACGATTGTCCTTGGtccctatatactgtaccctCTTCACCATACTAAAATAATGAGCTTCTTTTGTGAGCTGTAAGAGTTGTAGCAGTGCCACGGTGTACACACGGTCTTGATTCCCtgttatatttttctattgtgtgttGTATATATGATTTGTCGTCATGTAAGATGGTGTATAAACAGATTAAAGATATGCGGATCTGAATCGC

Function

NR:

description
LYR motif-containing protein 4B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620661.2 False 1118 mRNA 0.45 3 32489195 32549643
TU1103679 True 1060 TUCP 0.45 3 32489196 32549586

Neighbor

gene id symbol gene type direction distance location
LOC110536613 NA coding downstream 53744 32434028 ~ 32435451 (-)
LOC110535574 peci coding downstream 174320 32298402 ~ 32314875 (-)
LOC110535572 LOC106578588 coding downstream 230788 32245466 ~ 32258407 (-)
LOC110535571 LOC106578589 coding downstream 580931 31853797 ~ 31908264 (-)
LOC110535569 LOC106578596 coding downstream 1079810 31407966 ~ 31409385 (-)
LOC110535582 LOC106578581 coding upstream 145719 32695362 ~ 32702585 (-)
LOC110536595 LOC106578630 coding upstream 172630 32722273 ~ 32749027 (-)
LOC110536597 LOC106578630 coding upstream 218122 32767765 ~ 32796075 (-)
LOC110535590 LOC106578614 coding upstream 704731 33254374 ~ 33320337 (-)
LOC110535591 LOC106578613 coding upstream 785861 33335504 ~ 33376086 (-)
G968751 NA non-coding downstream 863 32486998 ~ 32488332 (-)
G968749 NA non-coding downstream 2521 32483301 ~ 32486674 (-)
G968748 NA non-coding downstream 8651 32477612 ~ 32480544 (-)
G968722 NA non-coding downstream 58124 32430832 ~ 32431071 (-)
G968720 NA non-coding downstream 60195 32428600 ~ 32429000 (-)
G968844 NA non-coding upstream 86850 32636493 ~ 32666377 (-)
G968875 NA non-coding upstream 133643 32683286 ~ 32683521 (-)
G968894 NA non-coding upstream 164080 32713723 ~ 32714040 (-)
G968897 NA non-coding upstream 167743 32717386 ~ 32717601 (-)
G968901 NA non-coding upstream 289107 32838750 ~ 32879586 (-)
G967535 NA other downstream 436002 32050960 ~ 32053193 (-)
G966663 LOC100194703 other downstream 1097851 31391036 ~ 31391344 (-)
G962982 NA other downstream 3766892 28721646 ~ 28722303 (-)
G961930 LOC106578555 other downstream 4652427 27835966 ~ 27836768 (-)
G961041 LOC107713907 other downstream 5686369 26737174 ~ 26802826 (-)
G968868 NA other upstream 117109 32666752 ~ 32667490 (-)
G970066 NA other upstream 1325171 33874814 ~ 33875272 (-)
LOC110535616 LOC106578707 other upstream 2260650 34810223 ~ 34978953 (-)
G971137 NA other upstream 2287329 34836972 ~ 34838926 (-)
G972383 LOC106578698 other upstream 3323026 35872669 ~ 35873258 (-)

Expression


Co-expression Network