LOC110535582 (LOC106578581)


Basic Information

Item Value
gene id LOC110535582
gene name LOC106578581
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 32695362 ~ 32702585 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036935309.1
TTCACTCCTCTTCGCCACGCTGTGTAACAGGCAACGGGAGAAAAAGCTCCCCGAGTGCTGCTGGAAGTTGATGGCTATGTGTGATGCTCAGACCTCAACATCGTTTTTCAATCAGAGTTTTTAAGATCTGCATATGCCAATGGTTTTACCACACGTAGAATGGGATTAACTTGGTCCGGCAAATATATCTCACTGTTTCTTGCTGTTCAGTTAGTTTATCTGCTACATGTGGTGAGAGCAACGGGGAAATGTGATACagtattcaaagggttctccaatTGCTTGCTGAGACTGGGGGAGAATATGGCTAACTATCCACAGGAGCTGGATGAGAAGGAAAACCTACAGACCATCTGCACATATTGGGATGACTTCCACTCATGTGCGACCACTGCGCTGGTGGATTGCCAAGAGGGAGCCACAGACCTATGGGAGAAGCTCAAAAAGGAGTCCAGAAACTTAGAGTTCCGAGGGAGCTTGTTTGAACTCTGTGGCGGGGGGAACGGGGCCTCCAAATCCACAGTCGCTTTAGGTCTCATCATACTTCTAACGGCACTTTCCGCCTTAGTGACTTGGCTTGCATTTTAGCAAAAACAAACAAAGAAGAAGATAAAGGGGGAAAAATGCTAGCTATTGacacaaaaatacaaaacaaaagagACGTTTGAATTCATTTACACCCAAATGGATTATACTTCATCCGGGGAAGGCGACCTGATTTTGCTAGAGACATTGGCGGGTCGTCTTCCGGGACTGGTGCACCATATTTCTCTGACCTGGGGTCAATTACATTAAATATTTAGCAGGTATTGAGTTTAAATTATGATGACATTTAGATGGATCCTCGCCCGGTTACTATTAAAGTCGACGATGAATTATTTATATTAGTAGCCTAGGCCTTGACATCTGTTATTTCAGGTGATTGCAAACTGCTCATACTCTGTAGGCTAATGCGAGGCGCGCTTAGCCCAACGAAATCTCCAGATCGGTCTCCAATATTCACCGTTTAGATATGTTATTTACTTTACTTTGCGAAATGTATCATGTCGAGCCAAGTATAAATGGAAAGGGTTGTTTGAGGATATGACGTTTCTACTTTCACACGATGCTAATAGCCTAACTATCACCctagaaaaaaatacatgtaaaatagCATAGTAATAAGAATGAAAAAAAGAGTACTCTGATTGAAAAAAAGAGTGCAAGCATTCAATGGTAGTTTGGTTATTACGTGAAAAGTAAGCGTATGGCAACATGATGACAAAGTTGGTCAATGTAGAGAACGAAAACAGTGGCCGGAGAGTGATATGACTGTTGCCATTATGTTGGCACTTTACCCATCAATTTACGAACAAATAGAAGCTACCCATGGGGTATAGTGTACATGAAACCATACTTTCCCaaagtaggctacagtagcacGAGAATACTCGGAACGCGAAATCAATAGCTGGATGAAAAGAAATTAAGCTAGCTGTATTTGATGTTGCATAGACCACTTTTTACTGCCTTCAAAATATGTGtattatgtttgtttgtttttggggATGTTGCATATAACACTTCACTATTTCAAATCATGTAAGTAAATAAGAGACTATGTATATCAAAGGAATTTTGAAAAGATAGATACTAATACTTTATcccaaacatttttaaaaatagatTGATTATTATATAACAAATCTGATTGCTAAAAGTACGACGAATATTAAATAAAACAGTTCATGTTTGAAAATAAGTGTGTGGTTCAGATTTGAACATGTTACTATTTGTAGTTCTGTTCCAAAatgtgtagcctacagtatgctGCCAAAATGTGTACATTGGTAGTGTGTAAATCATCCTAGCTGATTTTGACCTAACTCAATGATGTTGACAGGTGTCTTTGGCAACAACATCTTTGGATGTTGGGTTCATTCATGGCTTTGAAGCAAACGAGATGAAGCAGTCAATCATTTAGTATTcactcgaacacacacacacacgcacgaacgcacgcacgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaccgagtcacTTCATTGATTTagggagagaaagcaagagaccATACTGCTGTTTGTCTTTCTGGGCAAAAACGTAAAATCTCAAAGCGACTGGctactgtggctaggaaaaacagaAACTGGCTAGGAAAAATAGAAACATTGAAACAGGCTACAGTATTTAGAAGAAAAATACTGATTTAAATATGTCCAATAAAGCATCCTAATGTGCAAAAGATGACTTGAAATCGAGATTAGGAGTGGCAGGCGACAGGCGTCTGCGTTGCGTGAACCTTAACGATTAATAAAACAATATGTCCCTAAGGAA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0007399 nervous system development biological_process
GO:0031225 anchored component of membrane cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0030054 cell junction cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036935309.1 True 2398 mRNA 0.40 3 32695362 32702585

Neighbor

gene id symbol gene type direction distance location
LOC110535581 LOC106578582 coding downstream 145719 32489195 ~ 32549643 (-)
LOC110536613 NA coding downstream 259911 32434028 ~ 32435451 (-)
LOC110535574 peci coding downstream 380487 32298402 ~ 32314875 (-)
LOC110535572 LOC106578588 coding downstream 436955 32245466 ~ 32258407 (-)
LOC110535571 LOC106578589 coding downstream 787098 31853797 ~ 31908264 (-)
LOC110536595 LOC106578630 coding upstream 19688 32722273 ~ 32749027 (-)
LOC110536597 LOC106578630 coding upstream 65180 32767765 ~ 32796075 (-)
LOC110535590 LOC106578614 coding upstream 551789 33254374 ~ 33320337 (-)
LOC110535591 LOC106578613 coding upstream 632919 33335504 ~ 33376086 (-)
LOC110535005 nom1 coding upstream 698711 33401296 ~ 33412561 (-)
G968875 NA non-coding downstream 11841 32683286 ~ 32683521 (-)
G968844 NA non-coding downstream 28985 32636493 ~ 32666377 (-)
G968751 NA non-coding downstream 207030 32486998 ~ 32488332 (-)
G968749 NA non-coding downstream 208688 32483301 ~ 32486674 (-)
G968748 NA non-coding downstream 214818 32477612 ~ 32480544 (-)
G968894 NA non-coding upstream 11138 32713723 ~ 32714040 (-)
G968897 NA non-coding upstream 14801 32717386 ~ 32717601 (-)
G968901 NA non-coding upstream 136165 32838750 ~ 32879586 (-)
G969224 NA non-coding upstream 518016 33220601 ~ 33222033 (-)
G969230 NA non-coding upstream 529756 33232341 ~ 33261228 (-)
G968868 NA other downstream 27872 32666752 ~ 32667490 (-)
G967535 NA other downstream 642169 32050960 ~ 32053193 (-)
G966663 LOC100194703 other downstream 1304018 31391036 ~ 31391344 (-)
G962982 NA other downstream 3973059 28721646 ~ 28722303 (-)
G970066 NA other upstream 1172229 33874814 ~ 33875272 (-)
LOC110535616 LOC106578707 other upstream 2107708 34810223 ~ 34978953 (-)
G971137 NA other upstream 2134387 34836972 ~ 34838926 (-)
G972383 LOC106578698 other upstream 3170084 35872669 ~ 35873258 (-)
G974622 LOC106578671 other upstream 4511299 37213884 ~ 37214896 (-)

Expression


Co-expression Network