LOC110536597 (LOC106578630)


Basic Information

Item Value
gene id LOC110536597
gene name LOC106578630
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 32767765 ~ 32796075 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036935311.1
CGTGACTCTTCCTCCAACATCATCTCTACCTGAGCTTTTGAAGAACAGCAAAAACTGTTGACCCCTGCTTTCAACATGTCTTCCTCTGCACGTTGTTTTGGGACCAACTTCCTTGGGCGCCTTAAAAGCCCCATCTGTAGCTCCAACGCTGAGCAAGATGACCACCAACTTCCCAAGTTTGAGCACTTTGGGGAGGCTGTGGCAATTCCCCGTGGCCCCTACAGTGATGCCACCCTGGAATGTGTGAGAGTGGACATGATGCAAAATGAGAACAAGAGCGACCACCACTGTCACTTGTACGAAGGCAAAAACAACATTCTCATCGTCCGCAGAGCCCAAGAGTTTCAGATGACCCTCCAGTTCAACCAGCCCGTAAATCCCAGTGACAAATTCCAGATTGAGTTTTACATTGGTATCGATGCCAACGTGTTGAATGGCACAAAGATCATCATCTCCTTTGACGGCTCACAAACTGGGAATTGGACCGGCCGCATGATACAGCAACAAGGGGATGAGTGCGTGGTGGGCATCACCCCTTCTGCGGACGCCATCATCGGGAAGTACTACACGAATGTGGCGGTCATCGGGTCCAATGGAATCTCAAGGACACAAAAGGACTCTGGAACAGACTTCTACCTCCTGTTCAACGCCTGGGCGTCCAATGATGAAGTGTACATGCCCAATGAGGAAGAAAGGCAGGAGTATGTGTTGAATGAAAATGGCTTCATATATGAGGAGGAATCAGGTGATGGAAGACAATGGTTTTATGGTCAGTTTGTGGAAGGGATTCTTGATGCCTGTTTCCAAATCTTGGATGACTCACACATGCCTCTAGTAAACAGAGGCGATGCTGTCAAAGTCTGCAGGATAGGCTCTGCAATGATGAACTCCCAGGATGACCGCGGGGTCTTGGTGGGCAACTGGAGCGATGACTACTCCCTTGGCACTGCACCAACCTTCTGGATTGGCAGTGACCAGATCCTGCTCCAGTACGTCACCAAAGGGCCCGTCAGCTTCGCCCAGTGCTGGGTCTACGCCGGGACGTTCAACACCTTTCTGCGGTGTCTGGGCATCCCTGCCAGGGTGATCACCAACTTCAACTCTGCCCACGACAACACAGGGAACATAATCACAGATCTTGTCTTCAACTCAGTGGGAAATCAGCTTGAACTGAACGAGCGCCTTACCAGAGACTCAATCTGGAACTACCACTGCTGGAACGAGGCGTACTTGTCCAGACTTGACCTCCCTGCAGACCAGAACTTTGGTGGCTGGCAGGTGGTGGATTCCACCCCCCAGGAAACCAGTGATGGATATTTCCGCTGTGGACCTTGCTCTGTCAAAGCCATCAAGGAAGGAATGCTTGGCTATCAATTTGATGCCCCGTTTGTGTTTGCTGAGGTGAATAGCGACGTTTACAAATACAAGCTAAACTCACAAACTGGGAAAACTGAGTTACTAAGCGTAGACACAACTTATGTCGGCATGAAAATCCTGACAAAGTCCATTGGTGAGACCAATGAGCCAATGGACAttacagagacatacaaataccCAGAAGgcagtagTAAAGATGAGGAGACCATGAGGAATGCCGAGAGAACCTACAAGACGCATTTGCAATATGACGATGAGCAGGGCGTGGCGATGACGCTGGAGATCCCGCAGGAGCGTGTGAAGATTGGCCAGAACTTCCAGATGGCTGTGGTCTTCAGGAACCTGAGTGAAGACACACGCACCATCCATGGCTTCCTGGTCGGCTCCACGATCTACTACACCAACATCCAAAGGGCTCAGTTCAAGCAGTTGACCTTTGACGTCACACTGAAACCCATGGAGACGTCGAGGATACAGGTGGGCGTGCTGGCCCAGAACTACATGCCCAAGCTGGGTTGCCAATCCAACCTCCGCTTCGTGGTGACGGCCAAGAGCTTGGAGAACAACCAGGACTTGACGGCCATACAGATAGTGAACCTGAAAGGCCCCGAGCTGGCCTTTGCGATGAGTGGACCAGCGAAGGTGAACCAGGAGGTATTTGTCAAGGTGGAGTTCACCAACCCGTTCCCATTCAGCCTGCATGACGTGAGGATGGCCATGCAAGGGCCTAATTTCATCTCATACCGGGAAAAGTTGTACAGtgagatCTCTACCGGCGCCTCCATCACCTGGATAGAGTCCTGTGTCCCTACAAGGGCTGGGAATACAATGATCTATGCTGTCCTGGACTGCTCAGTCCTTGGGAATGTGCAAGGCAATTGGGCCGTCGGCGTCCAGGCCTGAGCATCGCCCAGGAAGCCCTTCCCACCTGCTAATCGCCTGCCATCGACCGGAGAACCATGGACGAATAGAGGCTCTTGTGTAGATTTGAAAGGATTTGATTGCTGGATATGCAATTCCATCTAGCTTATGAGAAGGTGAGGGCGAGCAAATAACATACCCCTTACGGAAAAAACACATGATTCACGGGTGAAATTTCCTCCTGGGAAATCATGTgaaaccatgttttttttttagaacaCTGAAGTTTACATGTGGATTTTACATGTGATCACATAACCTTTCACGTGAATATTTTTCAAATGAGATTCCACAGATGATGCCCTGCAAACAAAATTAAGTCGTTAGAAAACACACAAACAGTTCTTTTAACATACAGTGTTTTCAATGTACATTTTTGACATACATAATTACattgtgtatgtttatttatacagtcattattattcaacatgtcctcggCTGGgttcaggagtaacattaaaacagaataatatCCCCCACAGTAGACAACTATTCAGAAAACTATACTTATTCTGAAATAACGATGAAATCTATGGGGAGAGAATAATAAGATGAACTAAAATAGAAGTGCAGATGGCACTCTTTTGCTAAGTGCAGACATGTATTATAGATAATGAATGTGTATAGGAATGCTATAGACTTTGATGGGCAGCAGAAAGATCAGCGTAACCCAGAAGTTGTCAATTCTAATCCCAGGTGGGGTCATATTGAAAAGTCACTACTAAGTGATCATGTCAAATGTAATCATGTTGACATTGATGAAATATTTTGTACACTATTTTAGCTGAATAGTGTACCAGTTACTTTAAAACCCACAAATCATTTGATTCCCTTACACAAAAAGACATGCAAAATCACATTGTTTAGCTGAAATGTTCACATTTCACAAAAGAAAAATCACAAAAAAAAGAGACTTGAGGTCAGTTCTTCACATATGAAACCACATGTTCACATGTATTCACTTTAAagttcacatgttaacaccaccttttcacatatgaggagaataacatgttttcacctcacgTGGAATTTGTTTTTCACGTGTGAAAACGTTCACATAGGAACATCTAACTCTCAAATGTGTAGTTTCATGGTATCGTACGTAGATATTTTGCATCCTcatgttgtcacatttatttcacgAGATCATGTTTTCGcatgtgtagtttcatgttatcagatgttgcttttacatgttgtcacagATGTTATCACATGTGAAATGCATGTGATTTTTCTGTAAGGGATTGCTTTCACCGATAAGATTTTTTACAGAAGGGGCTAGGGGCTAGGAGTTGATTTGGAATTGGGCAGAAGAGGGAGGGCCAAGTCGCAATAAGCGCATCAGTTTATCTTATTATTTCCTCTGCATTGCCAAATATCAATCAAATCAATGTATTTTCAGGCATCGGTGACACTTAAAATTGAAGGGCACCTACATAAGGTCACAATATCATCACTTGCATGTCGACTCTTAACATCCTGTGTAAACTTGCAGTTGTGGACATAGTTTTTTCATAAAAGTTAACCCTTCACAAGTGTTTCCATATGAATATGATGGATAGATTTTTTTTATGCAGTCTAATTAGATTACAGTTATATATCATGGATTTAATTTGGTTTCGAATCAGCCGCCTCAGAATCGGGTTTCTGTTATTTTCGATCTGACAAACCTTTGCTGACTGTAAATTTCTCACACAATCATGACCTTCAATCTTTTAACATTTCAGCTGTGCACTGCTTTTGATTAACAATAAAATAATTTTCAAAATCAA

Function

NR:

description
PREDICTED: coagulation factor XIII A chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036935311.1 True 4079 mRNA 0.44 15 32767765 32796075

Neighbor

gene id symbol gene type direction distance location
LOC110536595 LOC106578630 coding downstream 18738 32722273 ~ 32749027 (-)
LOC110535582 LOC106578581 coding downstream 65180 32695362 ~ 32702585 (-)
LOC110535581 LOC106578582 coding downstream 218122 32489195 ~ 32549643 (-)
LOC110536613 NA coding downstream 332314 32434028 ~ 32435451 (-)
LOC110535574 peci coding downstream 452890 32298402 ~ 32314875 (-)
LOC110535590 LOC106578614 coding upstream 458299 33254374 ~ 33320337 (-)
LOC110535591 LOC106578613 coding upstream 539429 33335504 ~ 33376086 (-)
LOC110535005 nom1 coding upstream 605221 33401296 ~ 33412561 (-)
LOC110535593 LOC106578609 coding upstream 793418 33589493 ~ 33636781 (-)
LOC110535594 LOC106578606 coding upstream 873644 33669433 ~ 33683429 (-)
G968897 NA non-coding downstream 50164 32717386 ~ 32717601 (-)
G968894 NA non-coding downstream 53725 32713723 ~ 32714040 (-)
G968875 NA non-coding downstream 84244 32683286 ~ 32683521 (-)
G968844 NA non-coding downstream 101388 32636493 ~ 32666377 (-)
G968751 NA non-coding downstream 279433 32486998 ~ 32488332 (-)
G968901 NA non-coding upstream 42675 32838750 ~ 32879586 (-)
G969224 NA non-coding upstream 424526 33220601 ~ 33222033 (-)
G969230 NA non-coding upstream 436266 33232341 ~ 33261228 (-)
G969250 NA non-coding upstream 532325 33328400 ~ 33328646 (-)
G969306 NA non-coding upstream 629778 33425853 ~ 33473866 (-)
G968868 NA other downstream 100275 32666752 ~ 32667490 (-)
G967535 NA other downstream 714572 32050960 ~ 32053193 (-)
G966663 LOC100194703 other downstream 1376421 31391036 ~ 31391344 (-)
G962982 NA other downstream 4045462 28721646 ~ 28722303 (-)
G970066 NA other upstream 1078739 33874814 ~ 33875272 (-)
LOC110535616 LOC106578707 other upstream 2014218 34810223 ~ 34978953 (-)
G971137 NA other upstream 2040897 34836972 ~ 34838926 (-)
G972383 LOC106578698 other upstream 3076594 35872669 ~ 35873258 (-)
G974622 LOC106578671 other upstream 4417809 37213884 ~ 37214896 (-)

Expression


Co-expression Network