LOC110535587 (LOC106578620)


Basic Information

Item Value
gene id LOC110535587
gene name LOC106578620
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 32838100 ~ 32859519 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036935313.1
ACCTTTTTGCTTTTCCCGACATGGAATCAGTAATCAAGTAACATATTTTATTTACTGTATTGGCTGATGCAGCAATGAAACTGTTAGAGAACAGCAGTTTTGAAGCTCTGGGCTCTCAACTTTGTGTTGAAACGGGAGAGTCTCACATCCTGGGCAGGATCGAGAGCTACTCCTGCAAGATGGCTGGTGATGACAAGCACATGTTTAAGCAATTTTGCCAGGAGGGGGAGCCACATGTCCTAGAGGCCCTCTCGCCCCCCCAGTCCAGCGCCACCAGCCCATCCCAACTGGGGAAGAGCAGTGAGGACGCCCAAAACCCTCTGAGTGACAAGTGTTGCAGGAAGACCTTGTTCTACCTCATCACCACGCTCAACGAGTCGTTCAGGCCCGACTACGACTTCAGCGCAGCCCGGGCCCACGAGTTTAGTCGTGAGCCCAGCCTCAACTGGGTGGCGAATGCAGTGAGCAGCAGCCTGTACTCATCAGTTGGGGTGGAGTTCAACTCCCTGGGGCCTGAGCTGTGGAACTCCATCGACCAGGAAATTTGCCTGCAGGATTGTGACATTTACAGCTACAACCCTGACCTGGACTCAGACCCCTTTGGGGAGGAAGGCAGCCTCTGGTCCTTCAACTACTTCTTCTACAACAAGAAGCTGAAGAGGATTGTATTCTTCACCTGTCGCTCCGTCAGTGTCTTGAGTGGGTATGGCTGCGGTTGTCTGGACAACGAGTTGGACATGGAGCTGGATGATGAAGAGGAGATGGATGGATTCACTGAGGACAGGTTCCCCAGAGCTCTTTGTGTCTAGGCACATCCATGCCAAACTTCTACGCCTACACAACCTCCTCCCCCTTCATCTATCCTGTTTCTTATTTCCTCAtcattcttgttttttttctttttctcgaTGTTCTGTACAGCCTGACCCAGGAAGCCATTTGCTCATGTAGAGGAAAtccattttttttctccccattGACAAGTGCATGTTTCACGCCTTTCACATCAGCTCGATCCGACCCATACCGTGAAGGACGTTTTCTAAATGCCCAGGGTAACTGGGATCTAGGTCTCCTGTTTATTGTGCTTCCTCTATCTTCCGTTGTCGCTGAGCTAAGAACTGACTCTGCCTAATAATTTGATGGAAGGACCTTCCTTTGCCTCTCAAACCACATCCTCGTCACCTGAAACCAGCCTCTGCTTGGATGCTGCACTCTTAAAGAAACCCTCCCAATACTTATTGGATCTGTCTTGGACATTTATGGTCAAGAGAGACCATGGACAGCTAACTCTGACAAGCAAACATTTTCTTTTATTAAAAATCGCAGCAGATGATGTCACAGAAACGTCTGTGTAAGTGGAGATAGAAGTCCACAGTGCAACACCAGCATCAGTGAGAGCCATGGAAGGGGAGGGGCTTATTACATCAAACTTCTCCAATCCCACACTGGGTAGAGGATGGGACAACGACAGCTAATTCGATTGACTGTCTATCCAGCTGATTTCCATTTGTGACTGCTTCCTTTGTGTGGCTTTTATGCTTGACAGTGGTGTTAATGTGAGAATTGAAAACTTTTGTAGCTCCCAAGTTTTTAAACGAATGCTGCTTTTGTAATGGAAAcattgtaatatcttatgttgtcTTATTACTGCACATGACATGTGTAGATGGGAGATGGGAGATGACTCTGCCAAGGAAAGCAATATGACATCAGACTTGCAGCTTATACAAGATCACTTTCATGAGCGCCTCTGTCACATTGTTCTGCCTATCAGTAACCATGTTCCTCAATGTGTGATTTTTCTGATTCCCTTATGATTTAGGCTGACCTATTGTAAAACTTGTACCCATTTTCCTCTGCTACAATCATCCATTTATTTTATGCTCAAACATTACAAAGGCTTTGATGTAAAGCCAAGTGAATGTACTAAACACAGGCAGCAAAGGCATCAGCGATAGTTCCAGTAATGTTATTAAAGTGTTTTACAGTATTTTTTAGAAAGACAGACCCTTTTATCTCTGTGTTCCCTGTGTAAGGCTTGTGAACCTCCCATGATGACCTCCGTTCAGGACCTGTTTTGATTATACAGCATATGTTAATAAAGTTGTGTTTGAACCAAA
>XM_036935312.1
CTGTCTTCTGAAATAAATAACTAATGAACGTACGATAGACGGACTGGGTCGAATACAGTGGATTTATTCGGTTTTCATCGTCACTGTTGTTTTGCTTTCAAGTAATCGGTCTGGCTAACTGCACATAGCACAGGGACATTACGAAATAGACAGACGTGCAAAGTCGGTTAGAAAAGGCGACTTGATCGGACAGAAACcgtactaacgttagctagctaatctCTGTCAAATTAAATCGGTCAAAAGGGATGCCGCTGAAATCCAAATCAGACGGATATTTGGATTTAATGTCGTCTCATTTAATCGGCAGAAGCAGTTTTCCGATAAAAGGCAGCAATGAAACTGTTAGAGAACAGCAGTTTTGAAGCTCTGGGCTCTCAACTTTGTGTTGAAACGGGAGAGTCTCACATCCTGGGCAGGATCGAGAGCTACTCCTGCAAGATGGCTGGTGATGACAAGCACATGTTTAAGCAATTTTGCCAGGAGGGGGAGCCACATGTCCTAGAGGCCCTCTCGCCCCCCCAGTCCAGCGCCACCAGCCCATCCCAACTGGGGAAGAGCAGTGAGGACGCCCAAAACCCTCTGAGTGACAAGTGTTGCAGGAAGACCTTGTTCTACCTCATCACCACGCTCAACGAGTCGTTCAGGCCCGACTACGACTTCAGCGCAGCCCGGGCCCACGAGTTTAGTCGTGAGCCCAGCCTCAACTGGGTGGCGAATGCAGTGAGCAGCAGCCTGTACTCATCAGTTGGGGTGGAGTTCAACTCCCTGGGGCCTGAGCTGTGGAACTCCATCGACCAGGAAATTTGCCTGCAGGATTGTGACATTTACAGCTACAACCCTGACCTGGACTCAGACCCCTTTGGGGAGGAAGGCAGCCTCTGGTCCTTCAACTACTTCTTCTACAACAAGAAGCTGAAGAGGATTGTATTCTTCACCTGTCGCTCCGTCAGTGTCTTGAGTGGGTATGGCTGCGGTTGTCTGGACAACGAGTTGGACATGGAGCTGGATGATGAAGAGGAGATGGATGGATTCACTGAGGACAGGTTCCCCAGAGCTCTTTGTGTCTAGGCACATCCATGCCAAACTTCTACGCCTACACAACCTCCTCCCCCTTCATCTATCCTGTTTCTTATTTCCTCAtcattcttgttttttttctttttctcgaTGTTCTGTACAGCCTGACCCAGGAAGCCATTTGCTCATGTAGAGGAAAtccattttttttctccccattGACAAGTGCATGTTTCACGCCTTTCACATCAGCTCGATCCGACCCATACCGTGAAGGACGTTTTCTAAATGCCCAGGGTAACTGGGATCTAGGTCTCCTGTTTATTGTGCTTCCTCTATCTTCCGTTGTCGCTGAGCTAAGAACTGACTCTGCCTAATAATTTGATGGAAGGACCTTCCTTTGCCTCTCAAACCACATCCTCGTCACCTGAAACCAGCCTCTGCTTGGATGCTGCACTCTTAAAGAAACCCTCCCAATACTTATTGGATCTGTCTTGGACATTTATGGTCAAGAGAGACCATGGACAGCTAACTCTGACAAGCAAACATTTTCTTTTATTAAAAATCGCAGCAGATGATGTCACAGAAACGTCTGTGTAAGTGGAGATAGAAGTCCACAGTGCAACACCAGCATCAGTGAGAGCCATGGAAGGGGAGGGGCTTATTACATCAAACTTCTCCAATCCCACACTGGGTAGAGGATGGGACAACGACAGCTAATTCGATTGACTGTCTATCCAGCTGATTTCCATTTGTGACTGCTTCCTTTGTGTGGCTTTTATGCTTGACAGTGGTGTTAATGTGAGAATTGAAAACTTTTGTAGCTCCCAAGTTTTTAAACGAATGCTGCTTTTGTAATGGAAAcattgtaatatcttatgttgtcTTATTACTGCACATGACATGTGTAGATGGGAGATGGGAGATGACTCTGCCAAGGAAAGCAATATGACATCAGACTTGCAGCTTATACAAGATCACTTTCATGAGCGCCTCTGTCACATTGTTCTGCCTATCAGTAACCATGTTCCTCAATGTGTGATTTTTCTGATTCCCTTATGATTTAGGCTGACCTATTGTAAAACTTGTACCCATTTTCCTCTGCTACAATCATCCATTTATTTTATGCTCAAACATTACAAAGGCTTTGATGTAAAGCCAAGTGAATGTACTAAACACAGGCAGCAAAGGCATCAGCGATAGTTCCAGTAATGTTATTAAAGTGTTTTACAGTATTTTTTAGAAAGACAGACCCTTTTATCTCTGTGTTCCCTGTGTAAGGCTTGTGAACCTCCCATGATGACCTCCGTTCAGGACCTGTTTTGATTATACAGCATATGTTAATAAAGTTGTGTTTGAACCAAA
>XM_021620663.2
TGTCTTCTGAAATAAATAACTAATGAACGTACGATAGACGGACTGGGTCGAATACAGTGGATTTATTCGGTTTTCATCGTCACTGTTGTTTTGCTTTCAAGTAATCGGTCTGGCTAACTGCACATAGCACAGGGACATTACGAAATAGACAGACGTGCAAAGTCGGTTAGAAAAGGCGACTTGATCGGACAGAAACcgtactaacgttagctagctaatctCTGTCAAATTAAATCGGTCAAAAGGGATGCCGCTGAAATCCAAATCAGACGGATATTTGGATTTAATGTCGTCTCATTTAATCGGCAGAAGCAGTTTTCCGATAAAAGGTTGTACGATAAATCAATTTCGAACGAGTGTATTTTTAAATTGCTGAATTTGAGGAACTAAACGTTAGTAGGTAACCTTAGTCTGACGAATTGAAATCACGGACCGAAAGTGCTACGCTAACATACTAGCTAATTTGCCTGGgcagacaacaacagatctgtTTTGCATTATTGCCAAATAAACATTGCGAGTGAAATTGGTGAAGACGTTTCAGTTCCACAAAGAGTGCTGACATTATCTTTGACTTTGGCAGCAATGAAACTGTTAGAGAACAGCAGTTTTGAAGCTCTGGGCTCTCAACTTTGTGTTGAAACGGGAGAGTCTCACATCCTGGGCAGGATCGAGAGCTACTCCTGCAAGATGGCTGGTGATGACAAGCACATGTTTAAGCAATTTTGCCAGGAGGGGGAGCCACATGTCCTAGAGGCCCTCTCGCCCCCCCAGTCCAGCGCCACCAGCCCATCCCAACTGGGGAAGAGCAGTGAGGACGCCCAAAACCCTCTGAGTGACAAGTGTTGCAGGAAGACCTTGTTCTACCTCATCACCACGCTCAACGAGTCGTTCAGGCCCGACTACGACTTCAGCGCAGCCCGGGCCCACGAGTTTAGTCGTGAGCCCAGCCTCAACTGGGTGGCGAATGCAGTGAGCAGCAGCCTGTACTCATCAGTTGGGGTGGAGTTCAACTCCCTGGGGCCTGAGCTGTGGAACTCCATCGACCAGGAAATTTGCCTGCAGGATTGTGACATTTACAGCTACAACCCTGACCTGGACTCAGACCCCTTTGGGGAGGAAGGCAGCCTCTGGTCCTTCAACTACTTCTTCTACAACAAGAAGCTGAAGAGGATTGTATTCTTCACCTGTCGCTCCGTCAGTGTCTTGAGTGGGTATGGCTGCGGTTGTCTGGACAACGAGTTGGACATGGAGCTGGATGATGAAGAGGAGATGGATGGATTCACTGAGGACAGGTTCCCCAGAGCTCTTTGTGTCTAGGCACATCCATGCCAAACTTCTACGCCTACACAACCTCCTCCCCCTTCATCTATCCTGTTTCTTATTTCCTCAtcattcttgttttttttctttttctcgaTGTTCTGTACAGCCTGACCCAGGAAGCCATTTGCTCATGTAGAGGAAAtccattttttttctccccattGACAAGTGCATGTTTCACGCCTTTCACATCAGCTCGATCCGACCCATACCGTGAAGGACGTTTTCTAAATGCCCAGGGTAACTGGGATCTAGGTCTCCTGTTTATTGTGCTTCCTCTATCTTCCGTTGTCGCTGAGCTAAGAACTGACTCTGCCTAATAATTTGATGGAAGGACCTTCCTTTGCCTCTCAAACCACATCCTCGTCACCTGAAACCAGCCTCTGCTTGGATGCTGCACTCTTAAAGAAACCCTCCCAATACTTATTGGATCTGTCTTGGACATTTATGGTCAAGAGAGACCATGGACAGCTAACTCTGACAAGCAAACATTTTCTTTTATTAAAAATCGCAGCAGATGATGTCACAGAAACGTCTGTGTAAGTGGAGATAGAAGTCCACAGTGCAACACCAGCATCAGTGAGAGCCATGGAAGGGGAGGGGCTTATTACATCAAACTTCTCCAATCCCACACTGGGTAGAGGATGGGACAACGACAGCTAATTCGATTGACTGTCTATCCAGCTGATTTCCATTTGTGACTGCTTCCTTTGTGTGGCTTTTATGCTTGACAGTGGTGTTAATGTGAGAATTGAAAACTTTTGTAGCTCCCAAGTTTTTAAACGAATGCTGCTTTTGTAATGGAAAcattgtaatatcttatgttgtcTTATTACTGCACATGACATGTGTAGATGGGAGATGGGAGATGACTCTGCCAAGGAAAGCAATATGACATCAGACTTGCAGCTTATACAAGATCACTTTCATGAGCGCCTCTGTCACATTGTTCTGCCTATCAGTAACCATGTTCCTCAATGTGTGATTTTTCTGATTCCCTTATGATTTAGGCTGACCTATTGTAAAACTTGTACCCATTTTCCTCTGCTACAATCATCCATTTATTTTATGCTCAAACATTACAAAGGCTTTGATGTAAAGCCAAGTGAATGTACTAAACACAGGCAGCAAAGGCATCAGCGATAGTTCCAGTAATGTTATTAAAGTGTTTTACAGTATTTTTTAGAAAGACAGACCCTTTTATCTCTGTGTTCCCTGTGTAAGGCTTGTGAACCTCCCATGATGACCTCCGTTCAGGACCTGTTTTGATTATACAGCATATGTTAATAAAGTTGTGTTTGAACCAAA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0016480 negative regulation of transcription by RNA polymerase III biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036935313.1 False 2123 mRNA 0.46 8 32838100 32859519
XM_036935312.1 False 2385 mRNA 0.45 8 32838711 32859519
XM_021620663.2 True 2634 mRNA 0.45 8 32838712 32859519

Neighbor

gene id symbol gene type direction distance location
fars2 fars2 coding upstream 172538 32549489 ~ 32665562 (+)
ppp1r3g LOC106578584 coding upstream 352390 32483144 ~ 32485710 (+)
LOC110535578 LOC106578586 coding upstream 361623 32462425 ~ 32476477 (+)
LOC110535577 LOC106578587 coding upstream 447295 32371461 ~ 32390805 (+)
LOC110535575 LOC105028291 coding upstream 483388 32350682 ~ 32354712 (+)
LOC110536598 LOC106578619 coding downstream 26268 32869194 ~ 32928578 (+)
LOC110535588 LOC106578617 coding downstream 69701 32929220 ~ 32945244 (+)
LOC110535589 LOC106578615 coding downstream 86249 32945768 ~ 33234543 (+)
LOC110536614 LOC106578612 coding downstream 524070 33383589 ~ 33386375 (+)
LOC110535592 lmbr1 coding downstream 552186 33411705 ~ 33473890 (+)
G968158 NA non-coding upstream 117750 32719825 ~ 32720350 (+)
G968155 NA non-coding upstream 122108 32715641 ~ 32715992 (+)
G968152 NA non-coding upstream 126212 32710936 ~ 32711888 (+)
G968130 NA non-coding upstream 170182 32667666 ~ 32667918 (+)
G968129 NA non-coding upstream 170535 32666809 ~ 32667565 (+)
G968494 NA non-coding downstream 411885 33271404 ~ 33272172 (+)
G968545 NA non-coding downstream 467168 33326687 ~ 33326975 (+)
G968549 NA non-coding downstream 473221 33332740 ~ 33332999 (+)
G968520 NA non-coding downstream 484927 33344446 ~ 33425507 (+)
G965838 NA other upstream 2016848 30818838 ~ 30821252 (+)
LOC110535556 LOC106578558 other upstream 4588188 28132122 ~ 28249912 (+)
G962100 NA other upstream 4608699 28227528 ~ 28229401 (+)
G961984 NA other upstream 4896525 27897166 ~ 27941575 (+)
G961864 NA other upstream 5008923 27828746 ~ 27829177 (+)
G969455 LOC106578609 other downstream 743528 33603047 ~ 33603674 (+)
G969456 LOC106578609 other downstream 744994 33604513 ~ 33604810 (+)
G969752 LOC106578632 other downstream 934856 33794375 ~ 33795061 (+)

Expression


Co-expression Network