LOC110536598 (LOC106578619)



Basic Information


Item Value
gene id LOC110536598
gene name LOC106578619
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 32869194 ~ 32928578 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_036935315.1
ACCCTGAGGTAGTACAGAACGCAAACGTGCGCTGGGAGAGGAGTGCGTTGAAAGAGTGCGGCTGCTGTAGGTTATTGCAAGTGAAGGACTACCCGAACTCTGCGCGGTATGAGGGAAGCAGCGTGATATTATTGAAGAATGAGACAAGAAAATAAGGCAAATGAGCGTATACTTTATTGCAGAGTGGAAGAATAATCAATGCCCACTTTATCCAGGGCAAAATGGGCTCAGATGCGGTTGAACTAACGTGAGCGCAATCTGTGGTTGACTCCGAGAGGCTCTGCGCACTCTCCGCGCAGGAGGTTTAACATTGGTGACAGTTTAATAAAGAATAGAAGAAGCTTCTGTTGTTGAGGTCTTTACTCCAACATCCCATCAAAACTGTGGGCGCAAAGAAACGAATGTCAATAGACAGTATGACGGCTGTACGAAGCGCCCATGCACATAATGGGAGCTCCGCTGGATCAAAGGAGGATGGACAAAACACACCGAGCCCGGTTAACACCGGCCCCAATACAAACGTATTTCCACCGGCAGACACCGGCGATGACAAGTCTGGGTCTTCCGTTGGTGAACTAACTCAGACATGGATTCAGTTTACAAAGACATTCGTGCTCATTTTTCCCATATATGTTTTGGGATATTTTGAATTCAGTTTCAGTTGGCTCTTAATAGGACTTGTAATATTTTTCTGGTGGAGGAGAAACACAGGAGGCAAGAACACCCGACTGTACAGAGCCTTGGCGTTCTTTGAACAGGAGGAGAGAACTGTCAAACAAAGTCTGACAGCTTCTGATTTGCCATCATGGGTCAACTTCCCAGATGTGGAAAGAGTAGAGTGGCTGAACAAGACTGTGAGACAGATGTGGCCGTATATTTGCCAGTTCATAGAGAAGCTGTTCCGCGAGACTATCGAGCCGGCCGTGAAGGGAGCCAACTCCCACCTCAGCACGTTCCGCTTCAGCAAGTTCAACATGGGGGATAAGCCTTTAAGGATCAACGGGGTCAAGGTTTACACAGAGAACGTGGACAAGCGTCAGATCATCATGGACCTACAGATCAGTTTTGTTGGAAATACTGAAATTGATGTGGACATCAAAAGATACTACTGCAAAGCTGGTATTAAGAGCATACAGCTCCATGGAGTGTTGAGAGTAGTCATGGAGCCGTTGCTAGGTGACATGCCCCTGATAGGAGCCTTGTCCCTGTTCTTTCTGAAGAAACCTCTTTTGGACATCAACTGGACAGGAATCACCAATATACTAGACATTCCTGGGCTCAATGGCTTGTCTGACAGTCTAATTCAGGACATGATCTACAGCTACCTGGTGTTGCCCAACCGCATCACTATCCCACTGGTGGGGGATGTAGAACTTGCTCAGCTACGCTTCCCTATGCCAAAAGGAGTCCTGAGGATTCACTTCCTGGAGGCTCAGGACCTGGAAGGGAAGGATAAATTCCTGGGTGGCCTGATCAAGGGGAAGTCTGACCCTTACGGCGTCCTCCATATTGGAAACCAGCTCTTCCAGAGCAAGACCGTCAAAGAGAGCCTGCACCCCAAATGGAACGAAGTTTACGAGGCACTGGTATATGAGCACTCAGGCCAACACCTGGAGATTGAGTTGTTTGATGAGGACCCAGACAAAGATGATTTCCTGGGGAGCCTGATGATCGATATGAAAGAGCTTCACAAAGAGCAGAAGGTAGATGAGTGGTTTGACCTGGAAGAAGTCTCCACGGGGAAACTACACATGAAACTGGAgtggctctctctgctctctacccCTGACAAGATGGACCAGGTATTAAGGAGTGTGCGAGCTGACCGCAACCTGGCCAATGATGGACTCTCGTCTGCTCTGCTGGTGGTGTACTTGGACTCAGCCAAGAACCTGCCGAGCAACCTGTTTCATTTCAACCATGACGTGTTGAAGCAAGCCTCTGTCTTTAAGTCCCGGAAGTCCGGCAAGAAAACGAGCAGTGAACCAAGTCCTTGCGTTCATTTCACAGTTGGGAACAAATCATTTGAGAGTAAGATCCGCCATAAGACCAATGAGCCCATGTGGGAGGAAGCTTTCTCCTTCCTCATCCATAACCCCAGGAGGCAGGAGCTGGAGGTGGAGGTGAAGGACGACAAGCACCAGTGCACCCTGGGTAATCTTACAGTCCCCTTGAGTGGTCTATTGGTGGAAGAGGACATGATGTTCACTCAGCAATTTTCCCTGAGGAACTCTGGACCCAGCTCCACACTCAAACTGAAGTTGGCACTCAGGGTTCTGTTTCTGGAGAAGCAGACGCGTGCGTCGGAACAGCCCTCCTCTGTCCAAGTGAGGAAAGCCAGCGTGGTCAACCCCACCGTCCCCTCCCAGAGACTCTCCACATCGGAGTCACCTCTTCCCCCAGACACCAACCCCCCAACACCACCAATGGAGGCCGCCACCTACACCATCCAtcgcagagaggagcagagggaggagctGTACGCAGGCAGCCCCATCAGGAGCACCTCCAACCTGAACACCACCATATCCAGCTCCCAGAAACACCTGCCCCACAAGGACTCCATGGCCAGCCTGGCTTCGGACATCTCCCTGCCCTTCGCCACCCTAGAGCTGCAGCAAAGGCTCAGGCAGCTACAGAaTGGGTCTGCCCCTAGTCCATACCCCATGGGGGAGATTCAACTGACTGTCCGTCACAGCTCCCAGAGGAACAAGCTCATCGTGGTGGTGCATGCCTGTCGAAACCTCATTGCGTTCGCCAAGGATGAATCAGATCCTTTCATTCGGATTTATCTGCTCCCTGACAAGAGCCGGACTGGCCGGAGGAAGACCGGCACCATAAAGAAAACCCTGAACCCTGTGTATGATCAAACGTTTGAGTTTAGTGTGTCCATGGTGGAGCTGCACAGGAGAACTCTGGACATCGCTGTGAAGAATGGAGGAAGTATACTGTCCAAACACAGAGGACTCCTCGGGAAGGTGATTGTGGATTTGAGTGGTGAGGATATATCCAAGGGCTGGACGCAATGGTATGACCTCACTGAAGATGGCAGCCGCAAAATGGTCCAGGCATAGAGAGGGACATAGGAAGACCTTCACCTCCATAATCATAAACACACATCCTGCTGTTTCAACCCTAGTGACATTcaattcaaaaaggctttatagGCATGACAAAAATCAAATTTTGTATATCCAATTGACATTCATAGAAACACACATCACTCTGCTTTCATTTAGCGTTAGCACTTATCAAAGGGGACATCATTTTAATTTTcttactttttccccctttcATTTGTGTTTTATATCATGTTGACGCATGTAGAGATACAACTTGAAGTGTCGCTGCAACGTGCTGTTCCTGCACTATTGAAAGACGTCAAAGTTTCGCAAAATTGTCCTGATTTTGGTTAATGTGTCATAAAGCACATTTGCTGCCTTGTTTTCTAACTTGTTCAGTGTTTATATATGCATAAATGGACTAAATCGTTTTCATTGTTATTTGTTACTGTTGAAGGAAATTACGTTGGAATCCTATTTGTTTTCTTTGACATTGAATGGACTGCATATCTATTGATGTGACTGTAATTCTCATCAAAAGGACAGATATTGCTACTATGGAAGTTACAAGATGTAAACCAGGATGACCAGTTAATTTGTTTTATATGTTTTTGTCATGCAGTGTTATTTGGTCTATGTTTACTTTTGCCTATTTTCTTCATGCTAACGGTAATCAATGACTCCTACAGTGATCAAAAGTCCTACCACTGGATTCAcatttaaataatatatataaaatgatTGTTCAGTATATTCTATACTGTATATTTTGAAGGATCCAGTGCAATTTAGAATTATGTTCAGATGAAGGGGTATGTCAGGGCGGGGATATGTTCTGCTCTGGTGTACAGGAATAGTATATCTAAACAGATTTGAGTTTGTTTATCGTACTAAATAATTTGTAAATGAATAGAGGACCATATATGAATGGTCTCTTACACCAGACACATTATGccatttttcaaaaaaaaaaaaaaagttgttgaATGATGACAGAATGTGCCATAGGCTACTCCTGTACGTATAAGCCATGCAATGCTGTTTTTATCTTGAAACACGTTCATATTATGCATTACAAACATCTTAAATACTCTGTCAGTTATCTTTCCTGTGCCTTAACATTAAACACCTTCACACTTACTGTACAAATGTACATGAAACATTTTAAGGAATCAAGTTCTCACATTTGGAATAAGTATATTCATGGTTTGTTTTGAATAATAAAAGAGATGTTTctctttaataaaaaaaaaaggttaattTAAAGTTATGTGTAATGACTAGATTTCCCTGTGAAAATTTGACTGGTCCTAACTACATTGTAAGCCTTTGTGAGACTTTCTATGTCTGAGAGAATGTATCTAACTAGGTCCTTGTTTTGCTGTACATAAGCTCCATCTAGTGGTTTTTCAGACGCAACTTTAGTTGACGTTCTTTTAATTTATAACTACTTACTATTGTGTTACTTTATCATTTAAAAATAACCAATACAAATGAAAGAGACACTAACACAATGTGTGTGTCTTTACAGATTACTTTAAAGGCCCGGCCCAGAGCAGTCAATCTTTATTTTCTATATAAGGTTGAAATaaattttagtgtaagagctgttaaAATAAATTGCCTGACA
>XM_036935316.1
CCCTGAGGTAGTACAGAACGCAAACGTGCGCTGGGAGAGGAGTGCGTTGAAAGAGTGCGGCTGCTGTAGGTTATTGCAAGTGAAGGACTACCCGAACTCTGCGCGGTATGAGGGAAGCAGCGTGATATTATTGAAGAATGAGACAAGAAAATAAGGCAAATGAGCGTATACTTTATTGCAGAGTGGAAGAATAATCAATGCCCACTTTATCCAGGGCAAAATGGGCTCAGATGCGGTTGAACTAACGTGAGCGCAATCTGTGGTTGACTCCGAGAGGCTCTGCGCACTCTCCGCGCAGGAGGTTTAACATTGGTGACAGTTTAATAAAGAATAGAAGAAGCTTCTGTTGTTGAGGTCTTTACTCCAACATCCCATCAAAACTGTGGGCGCAAAGAAACGAATGTCAATAGACAGTATGACGGCTGTACGAAGCGCCCATGCACATAATGGGAGCTCCGCTGGATCAAAGGAGGATGGACAAAACACACCGAGCCCGGTTAACACCGGCCCCAATACAAACGTATTTCCACCGGCAGACACCGGCGATGACAAGTCTGGGTCTTCCGTTGGTGAACTAACTCAGACATGGATTCAGTTTACAAAGACATTCGTGCTCATTTTTCCCATATATGTTTTGGGATATTTTGAATTCAGTTTCAGTTGGCTCTTAATAGGACTTGTAATATTTTTCTGGTGGAGGAGAAACACAGGAGGCAAGAACACCCGACTGTACAGAGCCTTGGCGTTCTTTGAACAGGAGGAGAGAACTGTCAAACAAAGTCTGACAGCTTCTGATTTGCCATCATGGGTCAACTTCCCAGATGTGGAAAGAGTAGAGTGGCTGAACAAGACTGTGAGACAGATGTGGCCGTATATTTGCCAGTTCATAGAGAAGCTGTTCCGCGAGACTATCGAGCCGGCCGTGAAGGGAGCCAACTCCCACCTCAGCACGTTCCGCTTCAGCAAGTTCAACATGGGGGATAAGCCTTTAAGGATCAACGGGGTCAAGGTTTACACAGAGAACGTGGACAAGCGTCAGATCATCATGGACCTACAGATCAGTTTTGTTGGAAATACTGAAATTGATGTGGACATCAAAAGATACTACTGCAAAGCTGGTATTAAGAGCATACAGCTCCATGGAGTGTTGAGAGTAGTCATGGAGCCGTTGCTAGGTGACATGCCCCTGATAGGAGCCTTGTCCCTGTTCTTTCTGAAGAAACCTCTTTTGGACATCAACTGGACAGGAATCACCAATATACTAGACATTCCTGGGCTCAATGGCTTGTCTGACAGTCTAATTCAGGACATGATCTACAGCTACCTGGTGTTGCCCAACCGCATCACTATCCCACTGGTGGGGGATGTAGAACTTGCTCAGCTACGCTTCCCTATGCCAAAAGGAGTCCTGAGGATTCACTTCCTGGAGGCTCAGGACCTGGAAGGGAAGGATAAATTCCTGGGTGGCCTGATCAAGGGGAAGTCTGACCCTTACGGCGTCCTCCATATTGGAAACCAGCTCTTCCAGAGCAAGACCGTCAAAGAGAGCCTGCACCCCAAATGGAACGAAGTTTACGAGGCACTGGTATATGAGCACTCAGGCCAACACCTGGAGATTGAGTTGTTTGATGAGGACCCAGACAAAGATGATTTCCTGGGGAGCCTGATGATCGATATGAAAGAGCTTCACAAAGAGCAGAAGGTAGATGAGTGGTTTGACCTGGAAGAAGTCTCCACGGGGAAACTACACATGAAACTGGAgtggctctctctgctctctacccCTGACAAGATGGACCAGGTATTAAGGAGTGTGCGAGCTGACCGCAACCTGGCCAATGATGGACTCTCGTCTGCTCTGCTGGTGGTGTACTTGGACTCAGCCAAGAACCTGCCGTCCGGCAAGAAAACGAGCAGTGAACCAAGTCCTTGCGTTCATTTCACAGTTGGGAACAAATCATTTGAGAGTAAGATCCGCCATAAGACCAATGAGCCCATGTGGGAGGAAGCTTTCTCCTTCCTCATCCATAACCCCAGGAGGCAGGAGCTGGAGGTGGAGGTGAAGGACGACAAGCACCAGTGCACCCTGGGTAATCTTACAGTCCCCTTGAGTGGTCTATTGGTGGAAGAGGACATGATGTTCACTCAGCAATTTTCCCTGAGGAACTCTGGACCCAGCTCCACACTCAAACTGAAGTTGGCACTCAGGGTTCTGTTTCTGGAGAAGCAGACGCGTGCGTCGGAACAGCCCTCCTCTGTCCAAGTGAGGAAAGCCAGCGTGGTCAACCCCACCGTCCCCTCCCAGAGACTCTCCACATCGGAGTCACCTCTTCCCCCAGACACCAACCCCCCAACACCACCAATGGAGGCCGCCACCTACACCATCCAtcgcagagaggagcagagggaggagctGTACGCAGGCAGCCCCATCAGGAGCACCTCCAACCTGAACACCACCATATCCAGCTCCCAGAAACACCTGCCCCACAAGGACTCCATGGCCAGCCTGGCTTCGGACATCTCCCTGCCCTTCGCCACCCTAGAGCTGCAGCAAAGGCTCAGGCAGCTACAGAaTGGGTCTGCCCCTAGTCCATACCCCATGGGGGAGATTCAACTGACTGTCCGTCACAGCTCCCAGAGGAACAAGCTCATCGTGGTGGTGCATGCCTGTCGAAACCTCATTGCGTTCGCCAAGGATGAATCAGATCCTTTCATTCGGATTTATCTGCTCCCTGACAAGAGCCGGACTGGCCGGAGGAAGACCGGCACCATAAAGAAAACCCTGAACCCTGTGTATGATCAAACGTTTGAGTTTAGTGTGTCCATGGTGGAGCTGCACAGGAGAACTCTGGACATCGCTGTGAAGAATGGAGGAAGTATACTGTCCAAACACAGAGGACTCCTCGGGAAGGTGATTGTGGATTTGAGTGGTGAGGATATATCCAAGGGCTGGACGCAATGGTATGACCTCACTGAAGATGGCAGCCGCAAAATGGTCCAGGCATAGAGAGGGACATAGGAAGACCTTCACCTCCATAATCATAAACACACATCCTGCTGTTTCAACCCTAGTGACATTcaattcaaaaaggctttatagGCATGACAAAAATCAAATTTTGTATATCCAATTGACATTCATAGAAACACACATCACTCTGCTTTCATTTAGCGTTAGCACTTATCAAAGGGGACATCATTTTAATTTTcttactttttccccctttcATTTGTGTTTTATATCATGTTGACGCATGTAGAGATACAACTTGAAGTGTCGCTGCAACGTGCTGTTCCTGCACTATTGAAAGACGTCAAAGTTTCGCAAAATTGTCCTGATTTTGGTTAATGTGTCATAAAGCACATTTGCTGCCTTGTTTTCTAACTTGTTCAGTGTTTATATATGCATAAATGGACTAAATCGTTTTCATTGTTATTTGTTACTGTTGAAGGAAATTACGTTGGAATCCTATTTGTTTTCTTTGACATTGAATGGACTGCATATCTATTGATGTGACTGTAATTCTCATCAAAAGGACAGATATTGCTACTATGGAAGTTACAAGATGTAAACCAGGATGACCAGTTAATTTGTTTTATATGTTTTTGTCATGCAGTGTTATTTGGTCTATGTTTACTTTTGCCTATTTTCTTCATGCTAACGGTAATCAATGACTCCTACAGTGATCAAAAGTCCTACCACTGGATTCAcatttaaataatatatataaaatgatTGTTCAGTATATTCTATACTGTATATTTTGAAGGATCCAGTGCAATTTAGAATTATGTTCAGATGAAGGGGTATGTCAGGGCGGGGATATGTTCTGCTCTGGTGTACAGGAATAGTATATCTAAACAGATTTGAGTTTGTTTATCGTACTAAATAATTTGTAAATGAATAGAGGACCATATATGAATGGTCTCTTACACCAGACACATTATGccatttttcaaaaaaaaaaaaaaagttgttgaATGATGACAGAATGTGCCATAGGCTACTCCTGTACGTATAAGCCATGCAATGCTGTTTTTATCTTGAAACACGTTCATATTATGCATTACAAACATCTTAAATACTCTGTCAGTTATCTTTCCTGTGCCTTAACATTAAACACCTTCACACTTACTGTACAAATGTACATGAAACATTTTAAGGAATCAAGTTCTCACATTTGGAATAAGTATATTCATGGTTTGTTTTGAATAATAAAAGAGATGTTTctctttaataaaaaaaaaaggttaattTAAAGTTATGTGTAATGACTAGATTTCCCTGTGAAAATTTGACTGGTCCTAACTACATTGTAAGCCTTTGTGAGACTTTCTATGTCTGAGAGAATGTATCTAACTAGGTCCTTGTTTTGCTGTACATAAGCTCCATCTAGTGGTTTTTCAGACGCAACTTTAGTTGACGTTCTTTTAATTTATAACTACTTACTATTGTGTTACTTTATCATTTAAAAATAACCAATACAAATGAAAGAGACACTAACACAATGTGTGTGTCTTTACAGATTACTTTAAAGGCCCGGCCCAGAGCAGTCAATCTTTATTTTCTATATAAGGTTGAAATaaattttagtgtaagagctgttaaAATAAATTGCCTGACA
>TU1103150
TAAAAATAGATTTTGTCAAACagaactatgctacattttatctcagagaccctcaggatgacaaatcagagcaagattgctgaatgtaagtacattatttaccttcagaggtaaatgtatcaaaccagttgccgtgataaaatgtttttgttttgttgaATGATGACAGAATGTGCCATAGGCTACTCCTGTACGTATAAGCCATGCAATGCTGTTTTTATCTTGAAACACGTTCATATTATGCATTACAAACATCTTAAATACTCTGTCAGTTATCTTTCCTGTGCCTTAACATTAAACAC
>TU1103149
TGTTTATATATGCATAAATGGACTAAATCGTTTTCATTGTTATTTGTTACTGTTGAAGGAAATTACGTTGGAATCCTATTTGTTTTCTTTGACATTGAATGGACTGCATATCTATTGATGTGACTGTAATTCTCATCAAAAGGACAGATATTGCTACTATGGAAGTTACAAGATGTAAACCAGGATGACCAGTTAATTTGTTTTATATGTTTTTGTCATGCAGTGTTATTTGGTCTATGTTTACTTTTGCCTATTTTCTTCATGCTAACGGTAATCAATGACTCCTACAGTGATCAAAAGTCCTACCACTGGATTCAcattTAAATAATTTGTAAATGAATAGAGGACCATATATGAATGGTCTCTTACACCAGACACATTATGccatttttcaaaaaaaaaaaaaaagttgttgaATGATGACAGAATGTGCCATAGGCTACTCCTGTACGTATAAGCCATGCAATGCTGTTTTTATCTTGAAACACGTTCATATTATGCATTACAAACATCTTAAATACTCTGTCAGTTATCTTTCCTGTGCCTTAACATTAAACAC

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_036935315.1 False 4692 mRNA 0.45 23 32885787 32928578
XM_036935316.1 False 4628 mRNA 0.44 22 32885788 32928578
TU1103150 False 302 lncRNA 0.34 2 32869194 32928077
TU1103149 True 559 lncRNA 0.32 2 32927348 32928077

Neighbor


gene id symbol gene type direction distance location
LOC110535587 LOC106578620 coding upstream 26268 32838100 ~ 32859519 (+)
fars2 fars2 coding upstream 220225 32549489 ~ 32665562 (+)
ppp1r3g LOC106578584 coding upstream 400077 32483144 ~ 32485710 (+)
LOC110535578 LOC106578586 coding upstream 409310 32462425 ~ 32476477 (+)
LOC110535577 LOC106578587 coding upstream 494982 32371461 ~ 32390805 (+)
LOC110535588 LOC106578617 coding downstream 642 32929220 ~ 32945244 (+)
LOC110535589 LOC106578615 coding downstream 17190 32945768 ~ 33234543 (+)
LOC110536614 LOC106578612 coding downstream 455011 33383589 ~ 33386375 (+)
LOC110535592 lmbr1 coding downstream 483127 33411705 ~ 33473890 (+)
shh LOC106578610 coding downstream 645124 33573702 ~ 33582073 (+)
G968158 NA non-coding upstream 165437 32719825 ~ 32720350 (+)
G968155 NA non-coding upstream 169795 32715641 ~ 32715992 (+)
G968152 NA non-coding upstream 173899 32710936 ~ 32711888 (+)
G968130 NA non-coding upstream 217869 32667666 ~ 32667918 (+)
G968129 NA non-coding upstream 218222 32666809 ~ 32667565 (+)
G968494 NA non-coding downstream 342826 33271404 ~ 33272172 (+)
G968545 NA non-coding downstream 398109 33326687 ~ 33326975 (+)
G968549 NA non-coding downstream 404162 33332740 ~ 33332999 (+)
G968520 NA non-coding downstream 415868 33344446 ~ 33425507 (+)
G968649 NA non-coding downstream 546323 33474901 ~ 33475134 (+)
G965838 NA other upstream 2064535 30818838 ~ 30821252 (+)
LOC110535556 LOC106578558 other upstream 4635875 28132122 ~ 28249912 (+)
G962100 NA other upstream 4656386 28227528 ~ 28229401 (+)
G961984 NA other upstream 4944212 27897166 ~ 27941575 (+)
G961864 NA other upstream 5056610 27828746 ~ 27829177 (+)
G969455 LOC106578609 other downstream 674469 33603047 ~ 33603674 (+)
G969456 LOC106578609 other downstream 675935 33604513 ~ 33604810 (+)
G969752 LOC106578632 other downstream 865797 33794375 ~ 33795061 (+)

Expression



Co-expression Network