LOC110535588 (LOC106578617)


Basic Information

Item Value
gene id LOC110535588
gene name LOC106578617
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 32929220 ~ 32945244 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005034611.1
tgaaaaatctgtcgatgtgcccttgagcaaggaacttaaccctaattgcatctgtaaatcgctctggataagagagtctgctaaatgactaaaacgtTAACTCAGGAAGAATTGTTCACTACTCTCATTGACTTTCCAACCCCtggtctgtttaatctgcttCGGAAGTATCGTGATGTTGGGCACCAAGGTATATAAGATGGTGGATGAATGAAGATAGTTCACTCAGGCTGTTTACCAttgaacaaaaaataaaaaaggataTGTTCCGGGTTATTTAAGGGGGTGgctctcccatagacaccaatgcgATGGTAACTGGGTCTCTGGTCTTCTTAGATCATTGACTTCTATTAAAAATGAGGGAGTGGGATGTCTCGCTTCCTCCTCCGTCTCTGGAGACTTCGCAACAGTGTGTCAAGTGGCTCTGGACGTTGTCAAATCAAAATTTGCGCGGGGAAGCTGCGAATATAATAAGAAAATAGTGGATGATTTATAAGAACGGCATACGACATTGTACTGGCTAAACATGTCTAAGCGAGAGGCATTTTTAGACTCCATCTGCAAAGACAATGTGGGGGAATTTCTCATTTTCACTAAACTCCATAAGGACACGGCTGAGCCCTTTGACCTGGATGAGGTCCTGCAGGAGCTGCCAAAGGGCCAGAGAGAGGCACTGTGGGCCCGACTAGTCACACTACTTTGTGACCAGCTGGCAGCCTTCGCACCAGAGCACTGGGATGCTGGCTTAGAGGAGGACAAGCAGGACAATGACATGGAGGTGGTGTCCCCAGACCGGACACACACCATGTCTGTCCTTGAGGGAGTGACTCTAGTGGTCACAGCTTCTGTGGACGTCATTGAGGATGGCGACACCTACAATTCTCTCTTAGAGTGTGGCAACATATTAAATGGTGTCCTGCCTTACCTTCCTGCCTCTGAGATGCCTCTGCGGCAGGCTATCCACGGTCTGTGCGAGGCTTGGTGGAAGAAAGGCCTCCTTGGTAAAGAAGAGCTGGGCCGCACAGCCTTCCTTGGAAGCCTGGAGAAGACCCTCATACTGAAGAAACCAGGGGCTGAGATCCAACGGCTTTGGGGTTTCCATGAAGTGCTGTTCACTGTGGACTTTGCGTCGGAGTGCAGCAAGGAGCTGATCGATCTGCTGCTACAGTGCTTCCTCAGTGTCAATCACATTAAAAACGAAGATGGGAAGCGTCTGATGGTCTTCCTCTTTAGCTGGAATGTCAACTTCATCCGGATGATCCATGGAACCATCAAAAACCAGCTACCTTACTTTGCAAAGCCCCACACTGACCACATAGCTGAGATCTACTGCCGGGCCTGGAAGAAGGCTTCTGGGGTCTGTCTGGAGCAGATAGAGAGCACGTGCATCCAGGACTTCATGCAGCACGCTGTGCTCCTGCACAGGACTTCACCCGTCCATGCCAAAGTCAGACAGATACTGAGATACTTTCACAAACGGAAGGGCCGCAATGGGTTGGATGAGATGCTTTACAGACTCTACAAGCCCATTCTCTGGAGAGCGCTAAGCGCTGCCAACTCTGAGGTCCGGGCCAATGCCACTCTGCTCTTCACCGAGGCCTTCCCTATCAACAATCCTAGCCAGAGCAGTGAGAAGATGGACGAGACCATCCAGAAACAACTGGACACGCTGGTCTGCCTGCTAGAGGACCCTCAGCCTCTGGTGCGCTCCACAGCCACCCTCGGGGTCTGTAAGATCCTGGCCAAGTGCTGGGAGGTCATCCCCCCCACTGTCATCATCGACTTCCTCAAGAAGCTTGTGGTAGAGCTGGCCAATGATACCACCTCCCCCGATGTCCGCTGCTCCGTCTTCAAGTGTTTGACCATCGTGCTGGACAATGGCCACAGTCACCCGTTGCTGGAGCAGCTGCTGCCAGCTCTGAAGAACAGCCTCCATGACACCTCGGAGAAAGTACGCGTGGCCTTCCTCAACATGCTGCTCAAGATCAAAGCAGTGCGAGCTGCCAAGttcTGGAAGGTGTCCTCCATGGAACACCTGCTAGCCCGTCTGGCCGTCGACTCGCAGCCTGTCTCCAAGCGCATCGTCAACCTCCTCTTCAATTCCTTCTTCCCCGTCAACCAATCAGTGGAGGTGTGGTGCGAGCGCTGCGTCACTCTGATTCAGATGAACCCCAAGGCAGCTAGGACTTTCTACCAGTATGCACACATCTACACAGCCCCCACTAACATAGTCAAGCTGATGCTGATAATCCGCCAGTGTTTGAACGCCTGCATCCAGACTGAAGACCTGAACGAGACCAAATCGAACAAGGAGAACACAAGTGTTCTGGAGCATGTCCTGTCGGTCAAGGACACGGCGTCCATGGCCAGTCTGCTGGAGGTGGTGGTGATCTTGTGGCGGAGCATCCGGAAAGCCCTGGAGCTCAACAAGGACGCCCTCCAGTACACCACTGCCAAGTTTGGCTCCGTTGTGCCCAAGTACTTCAATGTCTTCCAGgagGAGCGTTCCACAGTTCCCCTCATCCAACTGGCCTCCCTACTGCCCCCAGCTTCTGTCCCCACTTTCAGCTGTGGGGTGCTGTCCAGGCTGAAGAGGCTGGAGGCGGGGGCCAAGGTGTCCCAGTACAGTCAGATCATCGAGTGCCTGTGTAGCTGGGGCCAGGCTGCACACGTCCTGGAGCTCATCACAGACTGGCTCACTGATGCCTTACCCACCCCTGCTGGCAAAGGGAACACCAGTCGGAAAGTGCGCATCAAGGAGACGATGGAGGCCAAGCCAGACCTGGGGCTAGATTACCTGGAGTACCTGGTCAGTCGTACCTCCACGCGGGACTGCATCCTGCCCTTCTGGCAGGGCCAGCTCAAACAGCTGCACAAAGCCCTCGGGGCCTGGAAGTCAGTGCTGTTATCCCATCTGAGCTCTTCTGAGGCCCAGGCGGATGTCCCCAGAGCAGAAACGGCACTAAGAGCATTTGCCCTTCACGCACGTCTCAGTGCCCATCTACAGCACAAATTCTCGGAGGGgagggatttccttgtccctgTGGAGAACACGGCAGCGTGGGTGGCAGAGAGGGTGCTGCCCTTCCTGGTCGGCCCCAGTGAGGGAGGGGTCACTGAGCAGCAGCGGGACCTCGCCAGGCAGGTAGTAGAGTGTTTCCTGACGGTGAGCAGAGATGTGATCCGGGTGGGCCTTGGGGACGAGGAGTTCAAAGGGCAGGTCCTTCACCTGTGCTCCATCGTGCTCCTCTCTGAGAAGGGCTACCTGTGTGTTCCTCTGCTGCTCTTTGTGCTGACGGAGGTGGCGGAGAACTACGTCCCCGAGAACCAGGACAACCAGTCCTCCATCATCCTCACCGTCGTCACCAACGTCTTCCAGAAGATCCTGGAGGTCATGGCTCGCTGCTTGAGGAAGGACCCCGAGGAGGGCCAGGAGCTGTGGCACTTGGCTGTTACCGCTCTAGGAGACTTCCTCCAGGTGGTTCAGGCTTGGTCGGGCATCGGCTCCAACCCCCTAAACGGGGTGTTTTCAACCGTCTGTGCTGCCACCCTTGCAGCGACCCAACACTCCCTGCAAAAGATGTCACATCCTCAAGAGGTCACAACACCAGAGACGGTCCAGGATTTGCCTCCTCTCTCAAGCATCTTGTTGAACGTTCTCCTCAAATCGCCCCCGGTCACAAGattttttttcccaCACAAAAAGGAAGAACGAGGAAGAACAGACACCAAACAGTCAACCCCACACGAGCCTTTCTGGCAGAGATCATCTCAACTGTCGACTCAGAGGTCATTGATGATCTGACCGGATTGGCAGCAGTTCTTCACATTCTGGCAGTTGTCAGACAGACTGGGAGGTTTAAGGCAGATCTGAAGAGTACAGCCGTGTCCGTCCAAAGACGGCTTCAGAAACATTACGCTGTCACGGCTGAGGACGAAGGACACATCCAGAGGGTAATCTACGAATCCGCTATCAACACTTTGAATGAGATTCTGATGCCATGCCCATGAGGGGGCAAGAGAACCTCATTTACATATTTAACATTTACTAATTGTTTCTTTGTTGCCAGTGTCAGCTATTCCTCTGTTCTGTTGTTTCCAAGCTCTTCTATTCTGTGTGATCATGGTGTATGCAGCATGACTTGTATTTGCGCTTTGGATTGATGTATTGCGTCCGTATACTCTATGCTGCATAAACTGAACTGTGTGTAACATTGCTAAGTAGCtgctaaaaatacatttgaaatgtgAGTTTCAACCGTGTCTTTGTGGATTCTCTCTAAAGGCCTCCACAAATCACTTACACTGCCACATGTTTTAGTTTAACTTATAGTACATATTTGCACTATTTTTATTGAAGGAAATATAGTTTGTTTAGTTATGCTCCACCACTGGCAGAGAAGGTTAGTTTCTGTGGCTAAGGAGGAAGGACGAGAATGAAGAACTAAAGGCCAGCTGCAGGGGATGAAAGGCAGACGTCCCTGCCACTGCTCCGCCACCAGGAGACGTACCGGGATAAGGAGAGTAACATTGAGGAGTGGTGGTCCCCGGGTGATGATCCTCTGGCTGGTTTACAGGCACTGCTGGAGGTGCAACAGGCAGAGATGCCCAGCAGAAGGTTACCACCTATCTACCTGTATAAAGTATGTGTATCATATTGTAGTGAATAGAGGGTAGCCCCGACTGGGACTAGAACCCATcaactgtcaagccaacacctttAACCGTTGTGCCAAGAGGTCCGAACTGCTTGATGAAGTTGCAAGGTGTTGTGCTAAGGTTGCTACAATATGCACTTATTGTTTGAACAATTTATTGATGAAATATAGTTGGTATGCTTTTAGTTATGTTCTATCCAACACAAACGCTCCATGACATTTCAATGCATGTATGAACTCTGTATAACCTGAGTAGCCATGCTATATTATGGTATTTTAAAATTATTCTGCCACTGTTTATACAGCCTTACAATAAACACATATATGAACTTG
>XM_021620664.2
tctgtcgatgtgcccttgagcaaggaacttaaccctaattgcatctgtaaatcgctctggataagagagtctgctaaatgactaaaacgtTAACTCAGGAAGAATTGTTCACTACTCTCATTGACTTTCCAACCCCtggtctgtttaatctgcttCGGAAGTATCGTGATGTTGGGCACCAAGGTATATAAGATGGTGGATGAATGAAGATAGTTCACTCAGGCTGTTTACCAttgaacaaaaaataaaaaaggataTGTTCCGGGTTATTTAAGGGGGTGgctctcccatagacaccaatgcgATGGTAACTGGGTCTCTGGTCTTCTTAGATCATTGACTTCTATTAAAAATGAGGGAGTGGGATGTCTCGCTTCCTCCTCCGTCTCTGGAGACTTCGCAACAGTGTGTCAAGTGGCTCTGGACGTTGTCAAATCAAAATTTGCGCGGGGAAGCTGCGAATATAATAAGAAAATAGTGGATGATTTATAAGAACGGCATACGACATTGTACTGGCTAAACATGTCTAAGCGAGAGGCATTTTTAGACTCCATCTGCAAAGACAATGTGGGGGAATTTCTCATTTTCACTAAACTCCATAAGGACACGGCTGAGCCCTTTGACCTGGATGAGGTCCTGCAGGAGCTGCCAAAGGGCCAGAGAGAGGCACTGTGGGCCCGACTAGTCACACTACTTTGTGACCAGCTGGCAGCCTTCGCACCAGAGCACTGGGATGCTGGCTTAGAGGAGGACAAGCAGGACAATGACATGGAGGTGGTGTCCCCAGACCGGACACACACCATGTCTGTCCTTGAGGGAGTGACTCTAGTGGTCACAGCTTCTGTGGACGTCATTGAGGATGGCGACACCTACAATTCTCTCTTAGAGTGTGGCAACATATTAAATGGTGTCCTGCCTTACCTTCCTGCCTCTGAGATGCCTCTGCGGCAGGCTATCCACGGTCTGTGCGAGGCTTGGTGGAAGAAAGGCCTCCTTGGTAAAGAAGAGCTGGGCCGCACAGCCTTCCTTGGAAGCCTGGAGAAGACCCTCATACTGAAGAAACCAGGGGCTGAGATCCAACGGCTTTGGGGTTTCCATGAAGTGCTGTTCACTGTGGACTTTGCGTCGGAGTGCAGCAAGGAGCTGATCGATCTGCTGCTACAGTGCTTCCTCAGTGTCAATCACATTAAAAACGAAGATGGGAAGCGTCTGATGGTCTTCCTCTTTAGCTGGAATGTCAACTTCATCCGGATGATCCATGGAACCATCAAAAACCAGCTACCTTACTTTGCAAAGCCCCACACTGACCACATAGCTGAGATCTACTGCCGGGCCTGGAAGAAGGCTTCTGGGGTCTGTCTGGAGCAGATAGAGAGCACGTGCATCCAGGACTTCATGCAGCACGCTGTGCTCCTGCACAGGACTTCACCCGTCCATGCCAAAGTCAGACAGATACTGAGATACTTTCACAAACGGAAGGGCCGCAATGGGTTGGATGAGATGCTTTACAGACTCTACAAGCCCATTCTCTGGAGAGCGCTAAGCGCTGCCAACTCTGAGGTCCGGGCCAATGCCACTCTGCTCTTCACCGAGGCCTTCCCTATCAACAATCCTAGCCAGAGCAGTGAGAAGATGGACGAGACCATCCAGAAACAACTGGACACGCTGGTCTGCCTGCTAGAGGACCCTCAGCCTCTGGTGCGCTCCACAGCCACCCTCGGGGTCTGTAAGATCCTGGCCAAGTGCTGGGAGGTCATCCCCCCCACTGTCATCATCGACTTCCTCAAGAAGCTTGTGGTAGAGCTGGCCAATGATACCACCTCCCCCGATGTCCGCTGCTCCGTCTTCAAGTGTTTGACCATCGTGCTGGACAATGGCCACAGTCACCCGTTGCTGGAGCAGCTGCTGCCAGCTCTGAAGAACAGCCTCCATGACACCTCGGAGAAAGTACGCGTGGCCTTCCTCAACATGCTGCTCAAGATCAAAGCAGTGCGAGCTGCCAAGttcTGGAAGGTGTCCTCCATGGAACACCTGCTAGCCCGTCTGGCCGTCGACTCGCAGCCTGTCTCCAAGCGCATCGTCAACCTCCTCTTCAATTCCTTCTTCCCCGTCAACCAATCAGTGGAGGTGTGGTGCGAGCGCTGCGTCACTCTGATTCAGATGAACCCCAAGGCAGCTAGGACTTTCTACCAGTATGCACACATCTACACAGCCCCCACTAACATAGTCAAGCTGATGCTGATAATCCGCCAGTGTTTGAACGCCTGCATCCAGACTGAAGACCTGAACGAGACCAAATCGAACAAGGAGAACACAAGTGTTCTGGAGCATGTCCTGTCGGTCAAGGACACGGCGTCCATGGCCAGTCTGCTGGAGGTGGTGGTGATCTTGTGGCGGAGCATCCGGAAAGCCCTGGAGCTCAACAAGGACGCCCTCCAGTACACCACTGCCAAGTTTGGCTCCGTTGTGCCCAAGTACTTCAATGTCTTCCAGgagGAGCGTTCCACAGTTCCCCTCATCCAACTGGCCTCCCTACTGCCCCCAGCTTCTGTCCCCACTTTCAGCTGTGGGGTGCTGTCCAGGCTGAAGAGGCTGGAGGCGGGGGCCAAGGTGTCCCAGTACAGTCAGATCATCGAGTGCCTGTGTAGCTGGGGCCAGGCTGCACACGTCCTGGAGCTCATCACAGACTGGCTCACTGATGCCTTACCCACCCCTGCTGGCAAAGGGAACACCAGTCGGAAAGTGCGCATCAAGGAGACGATGGAGGCCAAGCCAGACCTGGGGCTAGATTACCTGGAGTACCTGGTCAGTCGTACCTCCACGCGGGACTGCATCCTGCCCTTCTGGCAGGGCCAGCTCAAACAGCTGCACAAAGCCCTCGGGGCCTGGAAGTCAGTGCTGTTATCCCATCTGAGCTCTTCTGAGGCCCAGGCGGATGTCCCCAGAGCAGAAACGGCACTAAGAGCATTTGCCCTTCACGCACGTCTCAGTGCCCATCTACAGCACAAATTCTCGGAGGGgagggatttccttgtccctgTGGAGAACACGGCAGCGTGGGTGGCAGAGAGGGTGCTGCCCTTCCTGGTCGGCCCCAGTGAGGGAGGGGTCACTGAGCAGCAGCGGGACCTCGCCAGGCAGGTAGTAGAGTGTTTCCTGACGGTGAGCAGAGATGTGATCCGGGTGGGCCTTGGGGACGAGGAGTTCAAAGGGCAGGTCCTTCACCTGTGCTCCATCGTGCTCCTCTCTGAGAAGGGCTACCTGTGTGTTCCTCTGCTGCTCTTTGTGCTGACGGAGGTGGCGGAGAACTACGTCCCCGAGAACCAGGACAACCAGTCCTCCATCATCCTCACCGTCGTCACCAACGTCTTCCAGAAGATCCTGGAGGTCATGGCTCGCTGCTTGAGGAAGGACCCCGAGGAGGGCCAGGAGCTGTGGCACTTGGCTGTTACCGCTCTAGGAGACTTCCTCCAGGTGGTTCAGGCTTGGTCGGGCATCGGCTCCAACCCCCTAAACGGGGTGTTTTCAACCGTCTGTGCTGCCACCCTTGCAGCGACCCAACACTCCCTGCAAAAGATGTCACATCCTCAAGAGGTCACAACACCAGAGACGGTCCAGGATTTGCCTCCTCTCTCAAGCATCTTGTTGAACGTTCTCCTCAAATCGCCCCCGGTCACAAGAGCCTTTCTGGCAGAGATCATCTCAACTGTCGACTCAGAGGTCATTGATGATCTGACCGGATTGGCAGCAGTTCTTCACATTCTGGCAGTTGTCAGACAGACTGGGAGGTTTAAGGCAGATCTGAAGAGTACAGCCGTGTCCGTCCAAAGACGGCTTCAGAAACATTACGCTGTCACGGCTGAGGACGAAGGACACATCCAGAGGGTAATCTACGAATCCGCTATCAACACTTTGAATGAGATTCTGATGCCATGCCCATGAGGGGGCAAGAGAACCTCATTTACATATTTAACATTTACTAATTGTTTCTTTGTTGCCAGTGTCAGCTATTCCTCTGTTCTGTTGTTTCCAAGCTCTTCTATTCTGTGTGATCATGGTGTATGCAGCATGACTTGTATTTGCGCTTTGGATTGATGTATTGCGTCCGTATACTCTATGCTGCATAAACTGAACTGTGTGTAACATTGCTAAGTAGCtgctaaaaatacatttgaaatgtgAGTTTCAACCGTGTCTTTGTGGATTCTCTCTAAAGGCCTCCACAAATCACTTACACTGCCACATGTTTTAGTTTAACTTATAGTACATATTTGCACTATTTTTATTGAAGGAAATATAGTTTGTTTAGTTATGCTCCACCACTGGCAGAGAAGGTTAGTTTCTGTGGCTAAGGAGGAAGGACGAGAATGAAGAACTAAAGGCCAGCTGCAGGGGATGAAAGGCAGACGTCCCTGCCACTGCTCCGCCACCAGGAGACGTACCGGGATAAGGAGAGTAACATTGAGGAGTGGTGGTCCCCGGGTGATGATCCTCTGGCTGGTTTACAGGCACTGCTGGAGGTGCAACAGGCAGAGATGCCCAGCAGAAGGTTACCACCTATCTACCTGTATAAAGTATGTGTATCATATTGTAGTGAATAGAGGGTAGCCCCGACTGGGACTAGAACCCATcaactgtcaagccaacacctttAACCGTTGTGCCAAGAGGTCCGAACTGCTTGATGAAGTTGCAAGGTGTTGTGCTAAGGTTGCTACAATATGCACTTATTGTTTGAACAATTTATTGATGAAATATAGTTGGTATGCTTTTAGTTATGTTCTATCCAACACAAACGCTCCATGACATTTCAATGCATGTATGAACTCTGTATAACCTGAGTAGCCATGCTATATTATGGTATTTTAAAATTATTCTGCCACTGTTTATACAGCCTTACAATAAACACATATATGAACTTG

Function

NR:

description
condensin-2 complex subunit G2-like

GO: NA

KEGG:

id description
K11492 NCAPG2, LUZP5; condensin-2 complex subunit G2

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005034611.1 False 4994 mRNA 0.51 28 32929220 32945244
XM_021620664.2 True 4922 mRNA 0.51 27 32929227 32945244

Neighbor

gene id symbol gene type direction distance location
LOC110536598 LOC106578619 coding upstream 642 32869194 ~ 32928578 (+)
LOC110535587 LOC106578620 coding upstream 69701 32838100 ~ 32859519 (+)
fars2 fars2 coding upstream 263658 32549489 ~ 32665562 (+)
ppp1r3g LOC106578584 coding upstream 443510 32483144 ~ 32485710 (+)
LOC110535578 LOC106578586 coding upstream 452743 32462425 ~ 32476477 (+)
LOC110535589 LOC106578615 coding downstream 524 32945768 ~ 33234543 (+)
LOC110536614 LOC106578612 coding downstream 438345 33383589 ~ 33386375 (+)
LOC110535592 lmbr1 coding downstream 466461 33411705 ~ 33473890 (+)
shh LOC106578610 coding downstream 628458 33573702 ~ 33582073 (+)
LOC110535596 NA coding downstream 699589 33644833 ~ 33690571 (+)
G968158 NA non-coding upstream 208870 32719825 ~ 32720350 (+)
G968155 NA non-coding upstream 213228 32715641 ~ 32715992 (+)
G968152 NA non-coding upstream 217332 32710936 ~ 32711888 (+)
G968130 NA non-coding upstream 261302 32667666 ~ 32667918 (+)
G968494 NA non-coding downstream 326160 33271404 ~ 33272172 (+)
G968545 NA non-coding downstream 381443 33326687 ~ 33326975 (+)
G968549 NA non-coding downstream 387496 33332740 ~ 33332999 (+)
G968520 NA non-coding downstream 399202 33344446 ~ 33425507 (+)
G968649 NA non-coding downstream 529657 33474901 ~ 33475134 (+)
G965838 NA other upstream 2107968 30818838 ~ 30821252 (+)
LOC110535556 LOC106578558 other upstream 4679308 28132122 ~ 28249912 (+)
G962100 NA other upstream 4699819 28227528 ~ 28229401 (+)
G961984 NA other upstream 4987645 27897166 ~ 27941575 (+)
G961864 NA other upstream 5100043 27828746 ~ 27829177 (+)
G969455 LOC106578609 other downstream 657803 33603047 ~ 33603674 (+)
G969456 LOC106578609 other downstream 659269 33604513 ~ 33604810 (+)
G969752 LOC106578632 other downstream 849131 33794375 ~ 33795061 (+)

Expression


Co-expression Network