LOC110535589 (LOC106578615)


Basic Information

Item Value
gene id LOC110535589
gene name LOC106578615
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 32945768 ~ 33234543 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620665.2
GGTTGCTGTCCGCGGTGCTGAATCCTGACGCGACTGCGGAAGAGAAGTGGCGTACCCGAGAAATTGCTCTGCAAATCTTCTCATATTTTCACTTTCACTCGCAATTATCTCATCCATCAATTTTGGACCATCCTGTATTTAACACTGACACTATGTTTTAGCAAAGGTGTGTAATGGATTAGACTAGGTAGAGTAATGGATTCGCCGTGTTCCATCATCTTCGCTGTGTTGGCTCTTTGCCTGTCTCTTCCAACTACCTCCGCTGACAACAAATTTGGTTGCCTGTTTGAGGATGAGCTCTGTACACCTTACGAGTTCTGCGCTAACGACAGAGTGTTTGGAAGGTGTCTGGAGTTACCTAGTGCGGACCTATACACCTATGATGTGTCAGCCTCTGCTCTACAGCACCTGAGGACTCTCCTCCAGAAACTGTCCCACAgagGGTTGACATGGCAGGATGCTACCACCCAGCAGGTGATCTCCAGAGAGCTTTCCAAGATACGCAAGGTTCCTATCCGAAGGCCGGAACCCCCTTCTGCCTCTCTGACACTCTATGGTGGAGCCAGGAAGCTCAAGACTGGAAAGGGAGAGCTTGGCTTCCAGAAGTACCTTCAAGAGCTTGGTCTCCTTCCCCAGTCTGTTGGCACTGCTCGCCAGGGGCCCCAGCGAGAGAGCCCCCTCACCAAGAATGAAGACTCCCAGCCCAAGAAGGGAAAGTCTACATTCTATAGTCTACAGTCTGCAGAACCACCCCAGGGGGGTAAGGTCTTCACAAAGGGGGCCGTGGGGAGCTGGAGACCCCCAGTGGAGACAGCCTACTCCAGCCAGGAGCCTGGGAGTGCCAGGGGAAGTGCCAAGGGGTTGACTTCCCAGCTGGAGCGCTACCTGGCTGGGGCAGCACACACTCAGAGCCGCCCTTTACAAGGGGCAGTGGTGGGATCAGTGGTGGGACCCAAGGGGAAGCTCCACTATGTCAGCTATGTCAGCCCTGTACGCTCTGGTGATCAGGTGGAACCCCAGACACGACTTGGTGGCAGTGGCTCCACACCTCCAAGGCCCAACATAGACAGGCTTCTCTTCAAGGCTGCTTCCAACCATCAGGTGCCCAACAAACAGCTCAGTACAGTGGATGAACGGTTCATCCAGAACGTGGTCAACCAGCTGGGGAGGCAGAGAGTGAACATGGACGGTTTGATGGGTAAAGACCTGAACCAGCTGGCAGACATCATCTCTGAGGCCCTGCATGTGGTGGATGGGGAGGGGCCCGGGGCCAGAGCTAAGCCCAGGGTCATGGCACCCATACGGGACAGGCAGATGAAGAGAGAGCCCTTACCTTCCAAGGACCAGGATGAGGAGGACCAAGACGACATGTTGCAAGATGCAAGGCTTCAAGGGCAACCAATGGAGGATGCAGACTCTGAGCCAGACGACAAGGACCCAGTCTTCGTCAGTAAGCTGTTGGAGTACCTCAATATGGACCCCTTCAGTGATGAGCCAGATGCCCAGATGGAGGTTGATGGTGCTGGGGCAGCAGGCGGCCCCTCTATTGAGGGCCAGAGAACAGTGGGTCTGGAGAATGTGAGAAGCAGGACCACACAGGGCCAGGTGCCTGTACCACACCcctgggaggagaggaacatggccataggaggagaggatagatctCCAGACCAACCAATGGATGTCCAGGCTTCTGAATCCATGGTAGACTCCGAGGTGGAGAGGTGGATCCACGGTACCAAAGCTCCACCTCctctggaggctgagacagaccTCTTGGCAGataaaccacagaagaagaatcTCCTAGCAGAGCCACAGAAACAGGACATGCGActccaggaggaagaggaggtggtgcATATGGGGGTCAAAGCTTACTCAAAGGCATATCGAGGGAAAAACCACCTCGGCGACTTTGGCTACATCATTACAGACACAGCCTCCCTCACCTCTGACCAGGGCCTGGACCTGATGGAACATGTGGGTCGGAGGATCAACCTCCATGTGGCCAACATTCTCCACCTCTCAGTGCTGGGTCCAGCTGTGACCTTCAGGGTGGGCTCCAACCCTCGTAATGTCAGCACTGCAGATCTGGCCCACGTTGCAGTTCAGCAAAAGAAGCAGCTGGAGAAGGAAACTGGTGTGAAGATCCTGGAGGCTGGTGTCAGTGATaagGGCAGCTTGAGACAGATCCCGGTGGTCAAGGAGAGTCATCTGGAGTCTGGTCAGTTCATGGTCTTGACCATCATCTCCATGGTTCTGATCATGGGGGCGCTGGCAGTGTCTGGCTGGCTCTTCTGCCTGCGTCACCGCTCCCACCTCCAACTGAAGGAGAAACTAGCCAGCCTGGGGACTGACACCAGCGCTGATGCAACCGCAACCTATCAGGAGCTGTGTCGCCAGCGGATGGCTGTGCGGACATCGGAGCGTGCGGAGTGCCCGGAGCCTCTGCGGCGCCTCTCGCGGCTGAACAGCTCGTCTTCTCAGTTCAGCGACGGGGGACCCATAGCCAGCCCCTCGGCCCGTAGCTCCACTTCCTCCTGGTGCGAAGAGCCTGTCCCCTCCAACATGGACATCTCCACCGGCCACATGATACTGTCGTACATGGAGGACCACTTGAAGAACAAGAACCGCctggagagggagtgggaggcgATGTGTGGTTACCTGGCTGAGCCCGGTGACTGTGACGTGGGCCAGGGCCAACACAACACCAAGAGGAACCGCTCTGACGCCGTGGTTGTCTATGATCATTCCAGAATCACCTTGAAGGCTGAGAATAACCATGGCAACTCGGATTACATCAATGCTAGCCCAATTATGGACCATGACCCGAGGAACCCCATGTACATCGCTTCACAAGGCCCTCTACCCTCCACCGTGGCTGACTTCTGGCAGATGGTGTGGGAAAGTGGCTGTGTGGTCATCGTCATGCTTACGCCCCTGTCTGAAAATGGAGTGAAACAGTGTCAACAGTACTGGCCAGACGAGGGCTCCAATGTCTACCATGTTTATGAGGTGAACCTGGTTTCAGAGCACATCTGGTGTGAGGACTTCCTGGTCAGGAGTTTCTACCTGAAGAACTTGCAGACCAACGAGACACGCACTGTCACGCAGTTCCACTTCCTTTCCTGGGTGGACCACAGCATCCCTGACTCAGCCAGGACACTGCTGGACTTCCGTAGAAAGGTTAACAAGTGCTACCGGGGTCGGTCTTGTCCAATAATTGTCCACTGCAGTGACGGGGCTGGCCGAAGCGGAACGTACATCCTGATTGACATGGTCCTCAATAGGATGGCTAAAGGTGCTAAAGAGATTGATATTGCCGCTACCCTGGAGCACTTGAGAGACCAAAGAGCCGGCATGGTCCAGACAAAGgAGCAGTTTGAGCTTGCACTGACAGCCGTAGCGGAGGAGGTGAATGCCATCCTTAAAGCACTTCCACAGTGAAACTCGACGCCGCCCCACACCGTGCCACGTCTCGCTGTCTAAACACATGTTTTTTTCTGCCCACTCAAGTCTGTCATCTCgcttctgtcccaaatggcaccctattccctacgcagtgcgctacttttgaacagggcccataagggtctggtcaaaagtggtacactatgtagggaatagggtggtgccatttgggacatacatACCTAtcttctcttgtttctctctcctctgattCTCGCTCTTGGTATACTTATGAATGTTGTGCCAGATACTTGACCGACCTGGTCTTCTTAAGTGTGATGTATTCTTTTTGCAGTTGTGTTCCAGTGCCACTTACAGATAGCTAGACAAAGtcatgtgtgttctctctctctctctttgtgatcTGAATAATCTATTATACTAAGAATCAGATAATTGGTTATTGATGTGTGAAGAATATGATATTGTATTCAAGGCCTGAACATCTGTGTCCTGTATATAGAGAAGCTGCTTCAAAGAACAATGTCGATGTGATCTTTACTATTAAAGTTCTGAACCACATTCTATGGCCCTGTTCAAATACATTCGAAATGTATCCTTCCTTCCTTGAGAATCTGTAAgtgatatacactaccggtcaaacgttttagaacacctactcattcaagggttttttctctatttttactattttctacattgtagaattgtagaataacacatatggaatcatgcagtaaccaa

Function

NR:

description
receptor-type tyrosine-protein phosphatase N2-like isoform X1

GO: NA

KEGG:

id description
K07817 PTPRN; receptor-type tyrosine-protein phosphatase N

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620665.2 True 4182 mRNA 0.53 22 32945768 33234543

Neighbor

gene id symbol gene type direction distance location
LOC110535588 LOC106578617 coding upstream 524 32929220 ~ 32945244 (+)
LOC110536598 LOC106578619 coding upstream 17190 32869194 ~ 32928578 (+)
LOC110535587 LOC106578620 coding upstream 86249 32838100 ~ 32859519 (+)
fars2 fars2 coding upstream 280206 32549489 ~ 32665562 (+)
ppp1r3g LOC106578584 coding upstream 460058 32483144 ~ 32485710 (+)
LOC110536614 LOC106578612 coding downstream 149046 33383589 ~ 33386375 (+)
LOC110535592 lmbr1 coding downstream 177162 33411705 ~ 33473890 (+)
shh LOC106578610 coding downstream 339159 33573702 ~ 33582073 (+)
LOC110535596 NA coding downstream 410290 33644833 ~ 33690571 (+)
LOC110535601 LOC106590111 coding downstream 674173 33908713 ~ 34154878 (+)
G968158 NA non-coding upstream 225418 32719825 ~ 32720350 (+)
G968155 NA non-coding upstream 229776 32715641 ~ 32715992 (+)
G968152 NA non-coding upstream 233880 32710936 ~ 32711888 (+)
G968130 NA non-coding upstream 277850 32667666 ~ 32667918 (+)
G968494 NA non-coding downstream 36861 33271404 ~ 33272172 (+)
G968545 NA non-coding downstream 92144 33326687 ~ 33326975 (+)
G968549 NA non-coding downstream 98197 33332740 ~ 33332999 (+)
G968520 NA non-coding downstream 109903 33344446 ~ 33425507 (+)
G968649 NA non-coding downstream 240358 33474901 ~ 33475134 (+)
G965838 NA other upstream 2124516 30818838 ~ 30821252 (+)
LOC110535556 LOC106578558 other upstream 4695856 28132122 ~ 28249912 (+)
G962100 NA other upstream 4716367 28227528 ~ 28229401 (+)
G961984 NA other upstream 5004193 27897166 ~ 27941575 (+)
G961864 NA other upstream 5116591 27828746 ~ 27829177 (+)
G969455 LOC106578609 other downstream 368504 33603047 ~ 33603674 (+)
G969456 LOC106578609 other downstream 369970 33604513 ~ 33604810 (+)
G969752 LOC106578632 other downstream 559832 33794375 ~ 33795061 (+)

Expression


Co-expression Network