LOC110535591 (LOC106578613)



Basic Information


Item Value
gene id LOC110535591
gene name LOC106578613
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 33335504 ~ 33376086 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_036935319.1
ATTGAAACGCGTATCCAGTCGGATTTCAGTATTCTAAAGAAGGACGTACCCGTTTATGTTGTGTTTCTGGAAAGACGGGGAGAAGGAGCCAACAAAACATTTTCGTTTCATTTAATATCGCACAAAAGTCTTATGTACTCTTTCATTTCTGTTGGTCATTCCATTAATCAAAGATTGCTGTAGTACCCAATTTGTAAAGTCCTGAATTGAACCAAGACAAGGATCCTTCATATATGGTTAGAAACATCTCTTTGATAAAGTCTAACCATGAGCTTCAGTTTTGAGGGAGATTTCAAAACAAGACCCAAGGTGTCTCTTGGGGGAGCGAGTAAAAAGGAGGAAAAAGCATCTCTCCTACACCGGACACAAGAGgaaaggagaaaaagagagGATGAAAGACGAAGATTGAAGAATGCAATTATCATTCAATCCTATATACGAGGATACCATGACCGAAAACAGCAATATGCCATCCAGAGGGGCAACTTTGACCGCTGCGTCTGTCAGGCACAGTCAGAAGGTGGACCGCCAATCTCCGACGCTGCCAGTCTTAGTCTCTTAACAAGGCAACTGCTATTTTTCTATAGACAGAGTGAGGACTCTCAGAGATTGataTGGATTTGTCAGAACCTAGTGAAATACAATGGGCAGTTTGTGAAGCTGCTGGCGGGGCCCGAAAGACAGACGTGTGTGTTTCAGATCAAGAGGGTCCTGGGCTTCTGCTGCAGACTTCTGCAAACCTGCAAGGATGACAGTTTGAATGTTGCCGTTCCCATGAGGATGCTGGAGATCTATTCCTCAGAGAGAACCTATCTCCCTGTCCTTCAAGACGTTAATTGTGTGGCATCGTTAATCGAGCAGATTTTGCACTATATGGTACAGAAAGgatACTACAGGTCGCTTTATATTCTAGTGAATCACAAGCTCCCTTCCAGTCTGGAGTACAGTGATGCTCCCTCTGGAGTGCACGCGATCCCCTTGGCAGGCACCCTGCTGGAGCACACGCTGAAGCCCCTGCACTTTACCTATTCCTCCTGCACAACAGGCGCAAGGCAGTTTGTGTTTGCAGCCTTCACGGAGGAGTTCATCTCGGCGCCGTTCACGGAGCAGATCTTTCACTTCTTTATTCCGGCGCTGTCCGACCCGCGCCTCCACTTCCCCTTTGAGGCCTTCCTGGGCTCCCTGCAGGCCACTGTAGTCTCCTCCGCAGCGGCGCAGAAACAGGCGCCGTGGCTCTTCTACTTTGTCCTCTCAGCCGGGGAGACGTGCCTGGgtTCCCTATCAGAGGAGGGCCTCCAGCTATACCTGCGTGCTCTGCAGACCCTCCTACCTCTCCTTCCCGTGTCAGAGAGCACCAGCAGGCCGGAGGTCATCAGTGACTCTGAGGACGAGGAGGACACTGACATCCAGGCTCCGTCCacacagCACGACGGTTATCGGATATCGGTGCAGCTGATCACGGAGGAGTGCGTCCACAAACTGGACACCAAGCAGCAGACCAACGCGCTGCTCAACCTGGTGTGGAGGGACTCTGCCAGCGAAGAGGTCTTCACCATGATGGCCTCCATTTGCCACACTCTCATGGTGCAGCACCGCATGATGGTGCCTAAAGTCAGGCTTCTGTACAGTTTAGCGTTCAACGCACGTTTCCTGAGACATCTCTGGCACCTGATACAGTCCATGACTACCAAAATGATTACAGGgtccaTGGTTCCGCTGCTGCAGGTCATCTCCCGGGGGTCTCCCATGTCTCTGGAAGACTCCAATCGCATCATTCCCCTCTTCTATCTCTTCAGTTCCCTCTTCAGTCACTCGCTCATCTCTGTGCACGACAGCGAGTTCTTTGGCTACCCCATGGAAGGTCATGGCCACAGCAATACGTCCATGATGCCGTTCACATTGTCCGAGCTGGTCACCCTGTCTCGATTACTAAGAGACGCTTGTCTGGGCATTATCAAGCTGGCCTACCCAGAGACCAAGACGGAGCACCGTGAGGAGTACATGGCCGCCTTCCGCAGCGTGGGGGTCAAGACAAACACAGAGGTGCAGCAGCGCATCCAGGCCGAGCAGAAACGTTGGGTCCAGCTCTTCAAGGTCATCACTAACTTGGTAAAGATGGTGAAGGCTCGTGACATCAGACGACCATTCTGTCCAGCAGGCCATTGGCTGGCTGAAGAGGTCAACATCCGAGCAGATAAGGTGACCCAGTTGTACGTCCCGTCAGCCAGACACGTGTGGAGGACGCGGAGGATGGGACGCATCGGGCCCCTGCAGTCCACACTGGATGtGGGGATGGAGCCTCCACAGCTGTCTGTGTCTGAGGAGAGACACTTGGCCATCCTGACTGAGCTGCCCTTTGTCGTGCCCTTTGAGGAGCGAGTCAAGATCTTCCAGAGACTGATATACGCGGACAAGCGGGACGTCCAGGGAGACGGGCCGTTTCTGGACGGGATCAACGTCACCATCAGACGGAACTACATCTACGAGGACGCCTACGACAAGCTCTCCCCAGAAAACGAGGCGGACCTGAAGAAACGTATCCGGGTGCACCTGCTCAACGCCCACGGCCTGGACGAGGCGGGCATCGATGGAGGGGGCATCTTCCGTGAATTCCTCAACGAGCTGCTCAAGTCGGGCTTCAACCCCAACCAGGGGTTCTTCAAGACCACCAACGAGGGCCTTCTCTACCCCAGCCCCACCGCCCAGATGCTGGTGGGAGACTCCTTCGCCAGACACTACTACTTCCTGGGACGGATACTGGGGAAGGCGCTGTATGAGAACATGCTGGTTGAGCTGCCATTTGCCAGTTTCTTCCTGTCCAAGCTGCTGGGAACCAGTGCAGACGTGGACATCCACCACCTGGCCTCGCTGGACCCCGAGATGTACCGCAACCTGCTCTTCCTCAAGAGCTACGAGGAAGACGTGGAGGACCTGGGACTCAACTTCACCATTGTCAACAACGACCTGGGAGaggcacagGTGGTTGAGCTGAAGCCGGGAGGGAAGGACATCCCTGTGTCCACGGCCAACAGGATAGCATACATCCATTTAGTGGCTGATTACCGACTCAACAAACAGATCAGGCCCCACTGCCTGGCCTTCAGACAGGGCCTGGCCAACGTGGTAAACCTGGAGTGGCTGCGCATGTTTGACCAGCAGGAGATCCAGGTTTTGATATCTGGAGCTCATGTGCCCATTTGCCTTGACGACCTGAAGACGTTTACAAACTACTCAGGTGGTTACACTGCCACCCACCCTGTCATTACCATCTTCTGGGAGGTGGTAGAGAGCTTCACCGATGAAGAGAAACGCAAGCTGCTCAAGTTTGTCACCAGTTGCTCGCGGCCTCCTCTCCTGGGCTTCAAGGAACTGTACCCAGCTTTCTGCATCCATAACGGGGGGAATGACCTAGAGCGCCTGCCCACAGCTTCCACCTGCATGAACCTGCTTAAGCTGCCCGAGTTCTGCGACCAGCACCTGATGAGGAACAAGCTTCTGTACGCCATTGAGTCCTCCGCAGGCTTCGAGCTCAGCTGAGGGGGGGACGTCTGTGTCTTACTCCCTGCAACCACTGATTCAATTGACATGGACAGGCCAGAGAAGACTTCCTGTTGAGAGCGAGAGAACGAACATGATGAACTGATATCTCTCTTTGACTGTGTGTAGAACAGAAACGGGGGTGAAGGGATTGTCACCCAAGAGTGGGACGAGGGAAGAATGGAGGGGGGGGTGAGCGCAGAATGTTTTGGTTTTAAAGTAACTTACATGTGTATTCAAAATCCCCAAAAGAGCAGCAACAATAGAATCTCGAGGCTGTTTTTTTAAGACTTTGCGCAAAAGAAACAGACAAGATCTACTGTGAGTGTGTCCATGACCCTTCAGCAGAGTGCATTATGAAATAAACGACAATAACAATCGTGTTCACCAAAGATCGAACAGTgctgtctgaggaggagagaggaactgGCAATAAGAGGACAGAAATGGGGTGACACACAGGACTGCAGCACTCCTTACACCTCTGTCTCAAGGGCTTTGAGAGGGCCAGCTTGTCTGTTAGGGGCCTGTCCCTAATGGCATCCTatggccctggccaaaagtagtgaactataaagggacttgggtgccatttgggacacgttTTCTACTAGAGGTAATATAAGCTCACTTAGTTTTGTGATTACTGTAATGATTATTATTAATAGTAATTTCATAACATAAAAATGCAAATGCTTTGGGCAGGCTACTGTGTTGTTTTTCAAGGCAAAGAGACGAGTATTGCTAAGAGAGTGGACTATTGATTATGGAATATTTGTGAATATGTATATGTGTTTACACCACTCTTGTACGATTCCTTTAATCAGTATTTGTACAGGTTGCTTTTCTTGTGTTTTGAATGAAGGCCTCGTGTTCTCACACACATTAAAGTGAAccatctattctacagtatgtGCCCTGGCTGCAGTGATTATCCACCTATGGAGCAACAGCtgtggatgcgtcccaaatggcaccctattccctaattagtgaataaggtgccatttggggtggACACTGTCAAGTTGATAAGGCTAGTGAAACCTGACTATACATGTATCACCAGACTGGAAAAAATTGTCTCTGAATATGATTAAAAATGTCTTCTTTTTTTT

Function


NR:

description
ubiquitin-protein ligase E3C-like

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
K10589 UBE3C; ubiquitin-protein ligase E3 C

RNA


RNA id representative length rna type GC content exon number start site end site
XM_036935319.1 True 4655 mRNA 0.51 24 33335504 33376086

Neighbor


gene id symbol gene type direction distance location
LOC110535590 LOC106578614 coding downstream 15167 33254374 ~ 33320337 (-)
LOC110536597 LOC106578630 coding downstream 539429 32767765 ~ 32796075 (-)
LOC110536595 LOC106578630 coding downstream 586477 32722273 ~ 32749027 (-)
LOC110535582 LOC106578581 coding downstream 632919 32695362 ~ 32702585 (-)
LOC110535581 LOC106578582 coding downstream 785861 32489195 ~ 32549643 (-)
LOC110535005 nom1 coding upstream 25210 33401296 ~ 33412561 (-)
LOC110535593 LOC106578609 coding upstream 213407 33589493 ~ 33636781 (-)
LOC110535594 LOC106578606 coding upstream 293633 33669433 ~ 33683429 (-)
LOC110535597 LOC106578605 coding upstream 319811 33695897 ~ 33704784 (-)
trnar-ccg NA coding upstream 358566 33734652 ~ 33734724 (-)
G969250 NA non-coding downstream 6858 33328400 ~ 33328646 (-)
G969230 NA non-coding downstream 74276 33232341 ~ 33261228 (-)
G969224 NA non-coding downstream 113471 33220601 ~ 33222033 (-)
G968901 NA non-coding downstream 455918 32838750 ~ 32879586 (-)
G968897 NA non-coding downstream 617903 32717386 ~ 32717601 (-)
G969306 NA non-coding upstream 49767 33425853 ~ 33473866 (-)
G969350 NA non-coding upstream 111481 33487567 ~ 33487789 (-)
G969572 NA non-coding upstream 147575 33523661 ~ 33524008 (-)
G969615 NA non-coding upstream 207688 33583774 ~ 33584204 (-)
G968868 NA other downstream 668014 32666752 ~ 32667490 (-)
G967535 NA other downstream 1282311 32050960 ~ 32053193 (-)
G966663 LOC100194703 other downstream 1944160 31391036 ~ 31391344 (-)
G962982 NA other downstream 4613201 28721646 ~ 28722303 (-)
G970066 NA other upstream 498728 33874814 ~ 33875272 (-)
LOC110535616 LOC106578707 other upstream 1434207 34810223 ~ 34978953 (-)
G971137 NA other upstream 1460886 34836972 ~ 34838926 (-)
G972383 LOC106578698 other upstream 2496583 35872669 ~ 35873258 (-)
G974622 LOC106578671 other upstream 3837798 37213884 ~ 37214896 (-)

Expression



Co-expression Network