shh (LOC106578610)


Basic Information

Item Value
gene id shh
gene name LOC106578610
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 33573702 ~ 33582073 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620681.2
ATAGCAGTAAACGCGGTCTGCTCGCACAAGCGGCTGTAGCTCGACTGCGCAGAGATTCCGTTGTTAATTTTCTCACTTTTTACCCAAGCAGCAACGTCTCTCCTTCGATGTGTTCCGTTATCATTTTTGCAGAGGCGTTCATTTCCGCACCTGCCACGGTAGTGATCGGGGGGCACCGTAGCCTACAGACGAACTAGAGGAGGAGACAAGGACATTGTGGAAGCAGCCGCGCGAGAGGGAGGAGAAATATAGAAACAAACGGCCGCTGGTTGATAACACACTGAGGCTCCGAGTCATTTAGATTTTATGGACGAAATGCTGCTGTTGACGAGAATCGTTCTGGTCGGGTTGATCTGCTTGTCCTTGTCCGTGTCCTCTGGGATGGGCTGTGGACCGGGCAGGGGCTACGGTAGGAGAAGACATCCGAAGAAGCTGACACCTCTTGCGTACAAACAGTTCATCCCAAACGTCGCGGAGAAGACCCTAGGGGCCAGTGGCAGATACGAAGGGAAGATCACGCGGAACTCCGAGCGATTTAAAGAACTGACTCCCAATTACAATACTGACATTATCTTTAAGGATGAAGAGAACACCGGTGCGGACCGGCTCATGACTCAGAGATGTAAAGACAAGCTGAACTCCCTGGCGATCTCTGTCATGAACCAATGGCCAGGGGTAAAGCTCCGCGTCACCGAGGGCTGGGACGAGGATGGACACCATTTCGAAGAGTCGCTACACTACGAGGGAAGGGCAGTGGATATCACGACCTCCGATAGAGACAAGAGCAAATACGGCACGCTGTCCAGACTAGCAGTGGAGGCTGGGTTCGACTGGGTCTACTACGAGTCCAAGGCCCACATCCACTGTTCTGTCAAAGCAGAAAACTCAGTTGCTGCCAAATCAGGCGGTTGCTTCCCAGGCACTGCTTCGGTGACTCTCAAAGATGGAAGCAGGAAGGCAGTGAAAGACCTCAGAGTTGGCGACAAAGTGCTAGGTGGCAACAGTGATGGGGACCTCGCATACAGCGACTTCATCATGTTCATGGACCAGGACTCGTCAACTAGACGAGTATTTTATGTGATAGAGACTAAAGAACCGGCTCAGAAAATTACACTTACTGCTGCACATCTCCTCTTCGTGGTCAACAACtcaacggatgatctccacagcATGTCAGCAGTATTTGCCAGCGAAGTCAAACCTGGACAAAAGGTGGTTGTCTTTGATGATTTGCATAACCAACTGAAGTCAGTCACCGTGGGTCGGATTTACATGGAGGAGCACGAGGGGTCCTTTGCGCCCGTGACTGTTCAAGGAACCATCGTTGTTGATCAGGTGCTTGCGTCATGTTACGCGGTAATTGAAGACCACAATCTAGCGCACTGGGCGTTTGCACCTGTCAGACTGAGCTACTGGCTGTCCTCGTTGCTATCCCCGAAAGACTACTCGATGCCCAACGCCACCTTACATGAGGACGGAGTGCACTGGTACTCCAAAATTCTATATCAATTAGGAACGTGGCTCTTGGATAGCCACGCGCTTCACCCACTGGGGATGTCAATAAACTCAAGTTGAAGCAAAGCAAAATAAGACAATAAACAATAGTGGAATGAAAAATACAAAGCCCCCAGCGAAGTTGGGATATTTATTTCAGTGACTTGTACATGTGTGTCCCTTTTAAAGAATGAATGGAGCCTTAAAAGTTTTATTTGAATCATTTATTCTCATGTGAACTGGCTGGTATCACACGGATGGATCCTAAAACGGTGTGACCAGCAAAATTGTGCAGAATCTATTTTTGTATATCTCCAAGTAAACCACAAAGAAAAAGAAGACCATGTTAAAAGGAGCAAACTTCTTGACAGGTTGCAATGTTCTGTGCATATTATGTGCAACTGACTGATATATTTTGGGGATAAACAAACTTCGTGGGGGTCCATAAATTATATTTTTATACACAGAATTGTAAATTTGATTTTGACAGATCGTTACCGAATCACATTTCGTTATTTGAAATAGTGTTAGATACGagaatatattttaatttaaatAGTTGGGAAAAGTCTTGGAAATCTTGTTTTGTTTATTAAGAATTGTATTATTTTGGAAACGTTTCATTTAAATTGTCAGATTGGGACAGATATTCTGCCTCGTATAATTCTTTCCTCAGCTTTTGTTGTATTTCTTTTTTCAATTTTTCTTTTAGAAAATTTGAAATGCACATTCTGACAATTCAGTAACAGTTTAAGTAGTACAGAACAAAACGTTTCGTTGAATAAATTAAAAAGTAACTCCTGTAAATgtactaaaatgtatttttcttttcATATTTTGTAATAGGGAAATAGTTTTATAGAAATAACATGCGGCAGATGCACAGTTTGGATAGTATATAATAGCGTTCAAGTTAACTTTCATAACAGGGCGATGTGTCAAAAATGTCTAGAGTTTATTATTTATATGTTTATTACAAAATGAGATAAAGAAAATATTCAAACCTGCA

Function

NR:

description
sonic hedgehog protein A-like

GO: NA

KEGG:

id description
K11988 SHH; sonic hedgehog

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620681.2 True 2503 mRNA 0.44 3 33573702 33582073

Neighbor

gene id symbol gene type direction distance location
LOC110535592 lmbr1 coding upstream 99812 33411705 ~ 33473890 (+)
LOC110536614 LOC106578612 coding upstream 187327 33383589 ~ 33386375 (+)
LOC110535589 LOC106578615 coding upstream 339159 32945768 ~ 33234543 (+)
LOC110535588 LOC106578617 coding upstream 628458 32929220 ~ 32945244 (+)
LOC110536598 LOC106578619 coding upstream 645124 32869194 ~ 32928578 (+)
LOC110535596 NA coding downstream 62760 33644833 ~ 33690571 (+)
LOC110535601 LOC106590111 coding downstream 326643 33908713 ~ 34154878 (+)
LOC110535603 LOC106578637 coding downstream 593429 34175502 ~ 34177730 (+)
LOC110535604 LOC106578639 coding downstream 601766 34183839 ~ 34427557 (+)
LOC110535606 LOC106578642 coding downstream 845985 34428058 ~ 34430799 (+)
G969416 NA non-coding upstream 35291 33538197 ~ 33538411 (+)
G969415 NA non-coding upstream 35893 33537583 ~ 33537809 (+)
G969348 NA non-coding upstream 86141 33487283 ~ 33487561 (+)
G969347 NA non-coding upstream 88841 33484437 ~ 33484861 (+)
G969346 NA non-coding upstream 90596 33482896 ~ 33483106 (+)
G969444 NA non-coding downstream 1094 33583167 ~ 33583439 (+)
G969445 NA non-coding downstream 1392 33583465 ~ 33583674 (+)
G969440 NA non-coding downstream 9127 33591200 ~ 33594127 (+)
G969441 NA non-coding downstream 12474 33594547 ~ 33594805 (+)
G969449 NA non-coding downstream 14623 33596696 ~ 33596911 (+)
G965838 NA other upstream 2752450 30818838 ~ 30821252 (+)
LOC110535556 LOC106578558 other upstream 5323790 28132122 ~ 28249912 (+)
G962100 NA other upstream 5344301 28227528 ~ 28229401 (+)
G969455 LOC106578609 other downstream 20974 33603047 ~ 33603674 (+)
G969456 LOC106578609 other downstream 22440 33604513 ~ 33604810 (+)
G969752 LOC106578632 other downstream 212302 33794375 ~ 33795061 (+)
G970054 LOC106578636 other downstream 581743 34163816 ~ 34170987 (+)
G970283 NA other downstream 597630 34179703 ~ 34180048 (+)

Expression


Co-expression Network