LOC110535596


Basic Information

Item Value
gene id LOC110535596
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 33644833 ~ 33690571 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002475280.2
AACTGCTCTGAGACTGTCTGGAGTCTGTCTGAAACTGATAAAATTGGAGAGGGAGTTAAGGCTCTAGCTATGTAAATTGATAAGAACTCATGAATTCGAAATGGGAATTTACAGTCACTCAACAATGCTAGCGATTACGACGCAATGCAAATCAATATTTAAGCTCATGCTTTGAAAGTTTTTTCAATGTTTATCACCAGACAATTCATTATGCACAGGTATGATCTTCGGTTCAAAGAAGCCTATCAGCTGAAGTTTAAGCGTAACGTGGCATTTCAATGGAACAATTATTTGAAAGGGGGCCCTTATGACACCTTGAGCCCCGTCGATAACCCCCCCATGTCTGTAGTGATGACACTTTTCCAGGGATGATGGATTTTCTGAGACGTCACAAGAAGTTACTGCCATGGATCGAGAACCTCAACTACAAAAGGAGGCTATGCATCTTCTGAAGTACGGAGTGGGGTGTAGTATGTGGCGAGCTAAAACTTCATCAGAGTCCCAATACAGAGAATCGGCAGACGGCGGAGACGACCAGATGACATCAGGCTGCCTGCCTACCTGCTCTTGGACATGCTGACCTGCCCAACACCTCCGCTGACCATCTAGTTATGAGCTTCCAAATCCTCTCATGATGGAGGCTTCAAGAAACACTCAAACAGACTTGCTCTAGATGATCTAGCTACTGTTGTAGCCTATATTTCATGACTTCTTGTTTATTTTGCTTAACATGTGCTTTGAGATTCTGTATGTAATGAAAagtgccataaatgtttaataataaattattaattcattttaaaacaagtttcctgcaattctaga
>XR_002475279.2
AACTGCTCTGAGACTGTCTGGAGTCTGTCTGAAACTGATAAAATTGGAGAGGGAGTTAAGGCTCTAGCTATGTAAATTGATAAGAACTCATGAATTCGAAATGGGAATTTACAGTCACTCAACAATGCTAGCGATTACGACGCAATGCAAATCAATATTTAAGCTCATGCTTTGAAAGTTTTTTCAATGTTTATCACCAGACAATTCATTATGCACAGGTATGATCTTCGGTTCAAAGAAGCCTATCAGCTGAAGTTTAAGCGTAACGTGGCATTTCAATGGAACAATTATTTGAAAGGGGGCCCTTATGACACCTTGAGCCCCGTCGATAACCCCCCCATGTCTGTAGTGATGACACTTTTCCAGGGATGATGATTATACCTGCTCACTTGGGGATGTTTGTGGAAGCATGATTGACCCAGCATAGCAGATGATCTACATGGGAGCATTTCTTCTGGATTTACAGTATTTTACAGTTGGGACATCAAATTTCGTAAAGTTTTCAGTAAGTAACCTTTGAAATATTTTTGAGATAAATGCATTATTTTGGTTATGTGTAAAATAAGCCAACATATTTTATTCTAGTATTTGAGTAATTTGTGAAGTTTTTCAAACATTTTATGTACTAAGTAATACAGGGTAAtagaatgtaaaaaataaaaaataaaaaaagcttaAACAAAGCTTCTTAATAGAATCAAAGGCATTGCATTGTTTTTGTGCAAATTGACTCTGAAAAGCAGTGTAACTATAGCTTGTATGGAATATTGCAAGGCACCTTCTATTCTTATATTGAGGGACATAAATTGCTGTATCATCTCAAGAGATATCCATTTGGTTTGTTGTCAGTTCTAACAGTTTAGCCACCCACTTGAATCTATGACAACAGAATTTATCAAATCTTGTCAAATAATTAAGTTATTACAATATATTTATTGATTCAATGTATAATAGAACTGTTAATAAATGGTCAATAAAACGTGTCTACGTAGTTTGTCTACTTCTGTTGttccttgataaaaaaaataaagaaatctgCGGCACTTGCGTATTTAGGCCTACTATTCACATTTTTCCAATATCCAAGAAGGAAAACTCATTGTATTGTtagtacattttagtaatttcatatactctcttatccagagtgaattACAGTACTGGTTCCCCggtgggaatcgaacccaaaaccctggcgttgcaagcgccatgctctaccaactgaatcACACGGGACACACATCGAACCGTTATTTTATTTTTAGTTTGGGATGACCAGTGCCTATTCACTAGCACACATCCAGCTGCAGGAAACGGTGGTTGTTGTTCCTGTGGACCACTGGTTGTAGTGATTCTTCCATCATGGCCGCCGCTGCCACCCCGCCCTCACGTCTGCCACTCAGCAGTAAAATGGCAGCATGCAGTGGGTGAGACAAGAGAGTGATGCGCTCACCACTCCTATGTGGCTGCTGTGGTACACTCCACTGAACCATAACCTTTTCCGTTCACCACACCGAGCTTAGGGGCTCTCTATACGTCTTTAGGTGGTTTTATTAAACTGTTCAAACACAGTGATGTACGAGGGCGAGTTATTATATGAGTGTGTGCTTAGGGAAATAATTATTGCATAGGACAGCACAGGTAGAAGGTGCTACTAATACAGATGATGGGTAGCCTAGCCTACCACCATTTTCTCTGTGACTGTAGCCACAGGAATGGTCGACAGTGCAAGCCATTCAGAGATTGTCAGTGATAGAATTGATGTCAATTCGCCATGCTAATGTGTGGCAGACCACACACTAGAAGTATAAGGATCTGAATTGGCGAGTAGTGTTATTTGCAAAAAGGTCTTTACAGTGGCAGTTGTTGCATTTGTCTAGCAATTAACTAAGtaactaggaacagtgggcaaaactggttgaaattaGGTATTTAAAACCAGTTTTGCTCAATGGGATACAGTAAACGGTACATCATGCAGTGAGGCTTATCTGTGTGCATTGATATGTTTTTTTGTTATCAGCAGTTATCAAATGAGAGATGGAGCCAAGTTCTAATACCCAATTTCACCAGCTCCTCTACTGAGCATAGAGAAGTATTTATGGTGATCTATGCTTCATCTACCAGTCAATGTACACAGTAAAAGGGCAAACAGGGATTTAGTTGCATAATCATATCTTTTTCCTCTTGCGTAACACGGCTGCGCTGTTTTTCTGCAGTATCATGTCTCCAATGATGCTTCGCGTCACCATAGAACACTGCGTCATTTGTTCTTCCAGAATTGTACTGTACTCAGAAATAGAATCTGTTTTTGTGGCATAGGAAGGGCATTGTGGGGTCTGAAACATGGTAACCCTTACATTTGGGTCAAATGGGTGAATATATTAGAATTTTGGTTTATTGTGGTGATTATATGCCATTGATGCCGAATGTTGTTTTACAGAATACGATAACAAACCCCATTTGCAGTACTCTTATCTGTTTGCTTCTGCCCCAGCAACTTTGAATGTAGCCTAATTCAGAGATCATTCTTTACAATCTGTCGATAAACCCCAATTGTGTACTTTTCCTGATAAATGAATCGTTGTGATGCGGTATACAGCGCTTTGCCATCCTATCTACGCACAATACATAAGAAAAAAACAGATTGGGTCATACAAAACAGTGGTCAAATTAGGCAACCCTGGTAAATAAGGTAATCTCATTGGTTCACAATGTATATTTgtgtcttttttgttgttgttccgtGTGAGAGGAGGATGGCTGTGGTGTGCACCACGAAGAAGATGTCATGCTGAGGACGGGTTTCTGCACTGATGTTTTTGGTGTGATGTAGCGGCGGctctctcactgtgtctctgtTGCCCATGATGCGTAACCATAGAGAGTGATTGACAGCATGGTCCCTACACAGCAAAGGGGGCCTGAGGATTTTCTGAGACGTCACAAGAAGTTACTGCCATGGATCGAGAACCTCAACTACAAAAGGAGGCTATGCATCTTCTGAAGTACGGAGTGGGGTGTAGTATGTGGCGAGCTAAAACTTCATCAGAGTCCCAATACAGAGAATCGGCAGACGGCGGAGACGACCAGATGACATCAGGCTGCCTGCCTACCTGCTCTTGGACATGCTGACCTGCCCAACACCTCCGCTGACCATCTAGTTATGAGCTTCCAAATCCTCTCATGATGGAGGCTTCAAGAAACACTCAAACAGACTTGCTCTAGATGATCTAGCTACTGTTGTAGCCTATATTTCATGACTTCTTGTTTATTTTGCTTAACATGTGCTTTGAGATTCTGTATGTAATGAAAagtgccataaatgtttaataataaattattaattcattttaaaacaagtttcctgcaattctagaCATTTTGTCATgatttatgccatgttaatatatCTCAGTGAGAGTAAATAAGAAAATCAAAGGGGGCTCCCTGGAGGTCAGTGCCCCTGGGCATGTGCCCTGCGTGCCCAGTC
>TU1104460
TCTGAAACTGATAAAATTGGAGAGGGAGTTAAGGCTCTAGCTATGTAAATTGATAAGAACTCATGAATTCGAAATGGGAATTTACAGTCACTCAACAATGCTAGCGATTACGACGCAATGCAAATCAATATTTAAGCTCATGCTTTGAAAGTTTTTTCAATGTTTATCACCAGACAATTCATTATGCACAGGTATGATCTTCGGTTCAAAGAAGCCTATCAGCTGAAGTTTAAGCGTAACGTGGCATTTCAATGGAACAATTATTTGAAAGGGGGCCCTTATGACACCTTGAGCCCCGTCGATAACCCCCCCATGTCTGTAGTGATGACACTTTTCCAGGGATGATGATTATACCTGCTCACTTGGGGATGTTTGTGGAAGCATGATTGACCCAGCATAGCAGATGATCTACATGGGAGCATTTCTTCTGGATTTACAGTATTTTACAGTTGGGACATCAAATTTCGTAAAGTTTTCAGTAAGTAACCTTTGAAATATTTTTGAGATAAATGCATTATTTTGGTTATGTGTAAAATAAGCCAACATATTTTATTCTAGTATTTGAGTAATTTGTGAAGTTTTTCAAACATTTTATGTACTAAGTAATACAGGGTAAtagaatgtaaaaaataaaaaataaaaaaagcttaAACAAAGCTTCTTAATAGAATCAAAGGCATTGCATTGTTTTTGTGCAAATTGACTCTGAAAAGCAGTGTAACTATAGCTTGTATGGAATATTGCAAGGCACCTTCTATTCTTATATTGAGGGACATAAATTGCTGTATCATCTCAAGAGATATCCATTTGGTTTGTTGTCAGTTCTAACAGTTTAGCCACCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002475280.2 False 825 mRNA 0.41 5 33644833 33690458
XR_002475279.2 False 3493 mRNA 0.40 6 33644833 33690571
TU1104460 True 843 lncRNA 0.35 4 33644860 33661877

Neighbor

gene id symbol gene type direction distance location
shh LOC106578610 coding upstream 62760 33573702 ~ 33582073 (+)
LOC110535592 lmbr1 coding upstream 170943 33411705 ~ 33473890 (+)
LOC110536614 LOC106578612 coding upstream 258458 33383589 ~ 33386375 (+)
LOC110535589 LOC106578615 coding upstream 410290 32945768 ~ 33234543 (+)
LOC110535588 LOC106578617 coding upstream 699589 32929220 ~ 32945244 (+)
LOC110535601 LOC106590111 coding downstream 218145 33908713 ~ 34154878 (+)
LOC110535603 LOC106578637 coding downstream 484931 34175502 ~ 34177730 (+)
LOC110535604 LOC106578639 coding downstream 493268 34183839 ~ 34427557 (+)
LOC110535606 LOC106578642 coding downstream 737487 34428058 ~ 34430799 (+)
acad11 acad11 coding downstream 759151 34449722 ~ 34515337 (+)
G969457 NA non-coding upstream 25334 33605061 ~ 33619499 (+)
G969454 NA non-coding upstream 43935 33600661 ~ 33600898 (+)
G969452 NA non-coding upstream 45530 33599103 ~ 33599303 (+)
G969449 NA non-coding upstream 47922 33596696 ~ 33596911 (+)
G969441 NA non-coding upstream 50028 33594547 ~ 33594805 (+)
G969746 NA non-coding downstream 94773 33785344 ~ 33785953 (+)
G969748 NA non-coding downstream 97055 33787626 ~ 33787848 (+)
G969756 NA non-coding downstream 109938 33800509 ~ 33800766 (+)
G969757 NA non-coding downstream 110255 33800826 ~ 33801054 (+)
G969759 NA non-coding downstream 112042 33802613 ~ 33802829 (+)
G969456 LOC106578609 other upstream 40023 33604513 ~ 33604810 (+)
G969455 LOC106578609 other upstream 41159 33603047 ~ 33603674 (+)
G965838 NA other upstream 2823581 30818838 ~ 30821252 (+)
G969752 LOC106578632 other downstream 103804 33794375 ~ 33795061 (+)
G970054 LOC106578636 other downstream 473245 34163816 ~ 34170987 (+)
G970283 NA other downstream 489132 34179703 ~ 34180048 (+)
G970489 LOC106578645 other downstream 827255 34516457 ~ 34522340 (+)
G972725 NA other downstream 2559402 36249973 ~ 36250586 (+)

Expression


Co-expression Network