LOC110535602 (LOC106578636)


Basic Information

Item Value
gene id LOC110535602
gene name LOC106578636
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 34163743 ~ 34171085 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620693.2
ctcttcCCTTCTAAAGTGGGAGGATCTTTGTGCGTTCGAGTCACGCAGCTGTCAAAGATAGCTGTCACCCAGTTTCATGATCAAACACACATTGAATGAGAAAGGCTTCGCTAAGTCGAGCAGCGGACTTCAGGTAGCCTACCCCTGGCATAACTAGCCCATTGCGCCTCAAACAAATGAAGAAGCCGAGGAACGGTTCTATGACTTGATTTATTTTCAATGAACGAAGCCGTTTAACCATTTGGAGTATAGGTGTGGAATATCCCGAGAAAAAGGATCTGCCAATTAAACGAATACAATTCGAgaagaagaaggaaaaaaattaCTGCGCTCCTCTCGTGACCAACGTGAAAAGGGGATTTCTAACGGATATGAAGACAAAAAAGGGCATGATGACGTTGTCGGCCAGTGAGACGGATGAGGAGGACAGCATGGACGCCCCCCTGGACCTGTCATCCAGTACGGGAGGGAGCAGTGGGAAAAGGAAGCGGCGCGGGAACCTACCCAAGGAGTCAGTGCAGATCCTCAGGGACTGGCTATATGAGCATCGCTACAATGCCTACCCCTCTGAACAGGAGAAATCCCTGCTCTCCAAGCAGACGCAGCTCTCCACACTACAGGTTTGCAACTGGTTCATCAACGCACGTCGGCGGCTCCTCCCGGAGATGCTGCGTAAAGACGGTAAAGACCCTAACCGGTTCACCTTCTCCCGGAAAGGCAGCAAGGGAGGCGACGGGGGCTTCTCTGATTCCAGCTCTCAGTCACCAAAGCACGCCACGGGCCCCGAGGACAGCTACGACCAGCGGGCGCTGCACCCCTCCAGCTTCGAGGCAGGTCTCCCCAGCCCCGGCATCCTGCTGAAGGCCGTATCGTCCCCTAAGatgtccccctcctcttccctgggGCCCGACACCACCGTGGCTCCCCGGCCCTCTGTCATCTGTCACACCACTGTTACCACCATGGCCATGCAGAAACAGGGCTCGAGCCCCCCCTCCTACCTCTCCTGCTTCCTCTCCAGCATTAACACAGATGGCAGTAGGGCCGCAGAGCTGCTGCATTCCACCACAGAGGCTCTGGGGCTCTTCAGATGCCGGGAGGAAGGGTTGGGCCTGGGCGCCCCGCCAGTGACCACCACCCACACCACCATGGAGTGTAACCTAAGCCCCCAGAGTGGGCTCTTCAacacccctccccccacccccccagacaTCACACAGGACTTCAGTGGCTTCCAGCTCCTAGTGGATGTGGCCCTCAAGCGGGCGGCAGAGATGGAGCTGCAGGCTAAACAACTGGTGTCTtaaaggggagggaaagagagatgacaACCCAGTTGTTGTTGTCTCTAAATGAACTCCTCACATGAGTTCAGTGACTGTGCAACAAAGAACAAACGCAACTCAACAAGCCTGATAACTTATATTTTTGGTATACATTGGTGTACAAAACTATATCAAGGTGCCTTGGCTGTTAgttctttttttattttgtcatatgcgtgtatgtatgtatgtatctatgtGCATCTTTTTTGCACACAGGACCAAAAAGATTTACGGACAAAAAAAGCGCTGCCTGTCTTAAAACATTTCCTATGTATTTTACTAGAGCAAGGCATGAGGGCATACAAGTGTTCTGCAGGTGAGGGAGggtggttctcctctcctccattatgGGGTATGTAGTTTCACAAACCTATCCCCCGTGGGATATGTAGTTTCCAGATGTGTTTCACGTTTTACATTTCAGAGATCAGTTTGCGATGGTTTCCACTCGGCCTTTCGCACAATAGGGCCGAGTTAGGGTCCCCATCTCTCATCTCAGTGTCTTAAAACGTACTTTGCTCTTGGGATCTATGATGAACTTTATCACTACTGTAGAAAGggttctgtgttttttttttttcataagaGTAtagtttttgttttcttttgacTTTTGTTTTTATACCTTTTTGATATTTTATAAGAAAGTAAACCTCTCGTCTTTGTTTTGATTAAGCGTTTTCCTATACGAAGGGATCATTCAGATGAACAATGTAGCAAATTCCTAGTCtgagccttcctcccctcctcacatAGTGTCTGCAGccaaattggcaccctattccctatataagtgctcaaaagtagtgtatactacatagagaatagggtgccaatttggGACACACCCTGTGTAGCGATGGCCAGTTAACTGGAAGAACAACACTAAATAATATGTTTTTCATTTGTGAAGTCACCAGCAGCGGTAAAAAATATAGCATTTTCTAAATCACCAAAAAGCATTTTATGTACAAAAAAAGGACCATGTTTGTGTACAGCGATTGTGACATGACGCCCAATGATGTGATTTCCTTTCATACTGTGCAATGTTTGTGGCAAATAAGGGGTCACATATGGGATTTAAATAAATAGTTGTTTTCTACTA

Function

NR:

description
homeobox protein AKR-like

GO:

id name namespace
GO:0050794 regulation of cellular process biological_process
GO:0007420 brain development biological_process
GO:0003677 DNA binding molecular_function

KEGG:

id description
K19383 TGIF1; homeobox protein TGIF1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620693.2 True 2433 mRNA 0.48 3 34163743 34171085

Neighbor

gene id symbol gene type direction distance location
LOC110535600 LOC106578631 coding downstream 300253 33859835 ~ 33863490 (-)
LOC110535599 LOC106578604 coding downstream 304120 33848052 ~ 33859623 (-)
LOC110535598 LOC106578632 coding downstream 368557 33787375 ~ 33795186 (-)
trnar-ccg NA coding downstream 429019 33734652 ~ 33734724 (-)
LOC110535597 LOC106578605 coding downstream 458959 33695897 ~ 33704784 (-)
LOC110535608 LOC106578644 coding upstream 273435 34444520 ~ 34450214 (-)
LOC110535609 LOC106578643 coding upstream 319960 34491045 ~ 34499127 (-)
LOC110535610 LOC106578645 coding upstream 345370 34516455 ~ 34522431 (-)
LOC110536615 NA coding upstream 362202 34533287 ~ 34535122 (-)
LOC110535616 LOC106578707 coding upstream 639138 34810223 ~ 34978953 (-)
G970269 NA non-coding downstream 862 34162654 ~ 34162881 (-)
G970267 NA non-coding downstream 2195 34161337 ~ 34161548 (-)
G970233 NA non-coding downstream 7209 34156196 ~ 34156534 (-)
G970232 NA non-coding downstream 7724 34153671 ~ 34156019 (-)
G970260 NA non-coding downstream 21915 34141628 ~ 34141828 (-)
G970280 NA non-coding upstream 4347 34175432 ~ 34177724 (-)
G970613 NA non-coding upstream 15828 34186913 ~ 34187426 (-)
G970624 NA non-coding upstream 40644 34211729 ~ 34211941 (-)
G970650 NA non-coding upstream 76388 34247473 ~ 34340588 (-)
G970704 NA non-coding upstream 173274 34344359 ~ 34344648 (-)
G970066 NA other downstream 288471 33874814 ~ 33875272 (-)
G968868 NA other downstream 1496253 32666752 ~ 32667490 (-)
LOC110535581 LOC106578582 other downstream 1614157 32489195 ~ 32549643 (-)
G967535 NA other downstream 2110550 32050960 ~ 32053193 (-)
G966663 LOC100194703 other downstream 2772399 31391036 ~ 31391344 (-)
G971137 NA other upstream 665887 34836972 ~ 34838926 (-)
G972383 LOC106578698 other upstream 1701584 35872669 ~ 35873258 (-)
G974622 LOC106578671 other upstream 3042799 37213884 ~ 37214896 (-)
G974756 NA other upstream 3243293 37414378 ~ 37415635 (-)

Expression


Co-expression Network