LOC110535603 (LOC106578637)


Basic Information

Item Value
gene id LOC110535603
gene name LOC106578637
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 34175502 ~ 34177730 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620694.2
CAGAGTGGCGACGCCGCCCTGACTCGGCGGACTGGAACTAGAGAACTTCCGAGAGTGTACTGTGACACATCAAAACATTTTAATTCCCTCGCTGTGGTCATTACTGCTCTACGTACAACTACTTCAACAGCTGGCTATGAGGGGAGACGAAGCGGAGAGTGTCCGGTTACACTTTTCAGGTCTAAATTTAGGGAGACTACGCTGACGCAAGATGGCTAAAATCGGTCCTATGAGTGACAACGGGTACAAGACACTGGATCCATGGAAACGTATCCTACAACTTAGCTGTTATTGATGACAGGGTGTATTTTGGGCCTTTGTTGTCATCTTTCCGTAACACTTGGGGCTCTAGCGTTTTGTATAAAGGCGAGTCTTCCAAAATGCAGTTGTACAGCAGTGCGTTGACACACTATCCCGGATCCTCTCGCAAAGTTCCGATAACTATCACAAGTGGTACCATTACTGACCATTTGCCCAGGACAACAACGAACTCTGCAAATAATAAACCGAGTGGGCTTACTCCAACAGTGACTAACGGGAATCCGGTAGGAGAGACTCAATCTACCGCAAACATGCCCGCTGCTTTTTCATGTTATGAGGCTGCTTCCATGAAGCCAGTCTACTACACTTCTACCGCAGAGATAATCATTCGTCGGCCTGACGGAGTTGAGAGATACGTACCAGTGCACATCATAAAGGAGACCCAGACAAAACGGGCTCCGTCGGACTCATATTCGCAAGATGTTGTGATTCAGGCGCGTGACCATGATGATCATTTGGACACAGACTTGATTGTGGACTTCATTGATCACTTGAGAGGTAGAGGGGATCTACTCAGTGATAGTCAAAACGCTGAACGTGAAAATAACCTGATAAACGTCGACAAGAACGATGGACCAAGTTACAGAAAGTGTGGGGAGAGAATGAACATGGCAAATGGGAAGGGAAAAACCGTTACAAGTGACATCGTGAACCCAAAACGCCATCAGAACTTAGAGGCGCAGTCCACCCATTTAGGCCAGAACGTCGTGGACTCCCGTGAAAGTAAAAATGACAGTGAATACTCAGACCTGGACTCTCCATCAGGCGAGGCGCAGCTCTTTGAGCTCCGTGTCCTACAGGAGCCGTCTCCGCGGAGAGATGCAAAAAGGGGTGACATCAACGACAAGGTGACGTGCTACATAGCGGAGGTGGAGAAACAGAACAAGTACCTTCAGGAGAGGGCACACAAGTACAGATTCCACATCATCCCTGACGGCAACTGTCTGTACAGGGCGGTGTGCAAAGCCGCCTACGGAGAGCAGTCTATGCACAGCGAGCTGAGAGAGCAGACAATGCACCATATCGCCGACCACCTGGATGAGTTTAACCCCATCATTGAGGGAGATGTCGGGGAGTTCTTGATCAATGCAGCTCAGGACGGCGCCTGGGCGGGCTATCCGGAGCTTCTGGCGATGAGTCAGATGTTGAATGTGAACATTTACCTAACCACAGGAGGTAGCTTGGAGAGTCCCACGGTTTCAACCATGGTGCACTACCTGGGGGAAGATGATTCGTCCAAACCCGCTGTCTGGTTGAGTTGGCTCAGCAACGGACACTATGATGTCTTGCTGGACAGGTGTGTGGCCAACCCAGAGTATGACGAGTGGTTTCATCACTCTCAGATGCAAAGGAAACGGGACGAAGAGCTGGCCAAGTCGATGGCAGCATCACTGTCTAAAATGTACATTGAGCAAAACGGTCACATTTGAAACCAATAGTTATTCAACTGCTGCATTCAAATGTTAatcagcctctctctctttctctctcactctctctctcattctctttaaACCGATTGCACTTTgattctgtgtgtttgtgacttcAACATTGCCTTAATGACATTTTCTAAGTTTTGTATTGTACCCGAATTGAAGTGCAGTGCACGCACATGTTATATTTCAAAATGTTGTGTTGTAAATAGACTAAACAACAAAATGTTAGTTCCAAGTGATGCTTGAAGGAGCTTGTATTATTTCCCATACATTGATATATTTTGTTTGAAGTGAATGGGTTGGAATTACTCTGTATCAACCTAAAAAAAATGGTGTCAACTGGTTAAATAGACATTTGTTGATACTAAATCTATagtgaacaaaattataaaagctacatataaagtgttggtcccatgtttcatgagctgaaataaaagatcccagaaatgttccatacagacaaaaa

Function

NR:

description
OTU domain-containing protein 1-like

GO: NA

KEGG:

id description
K13716 OTUD1; OTU domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620694.2 True 2229 mRNA 0.46 1 34175502 34177730

Neighbor

gene id symbol gene type direction distance location
LOC110535601 LOC106590111 coding upstream 20624 33908713 ~ 34154878 (+)
LOC110535596 NA coding upstream 484931 33644833 ~ 33690571 (+)
shh LOC106578610 coding upstream 593429 33573702 ~ 33582073 (+)
LOC110535592 lmbr1 coding upstream 701612 33411705 ~ 33473890 (+)
LOC110536614 LOC106578612 coding upstream 789127 33383589 ~ 33386375 (+)
LOC110535604 LOC106578639 coding downstream 6109 34183839 ~ 34427557 (+)
LOC110535606 LOC106578642 coding downstream 250328 34428058 ~ 34430799 (+)
acad11 acad11 coding downstream 271992 34449722 ~ 34515337 (+)
LOC110535611 LOC106578646 coding downstream 381611 34559341 ~ 34713016 (+)
trnar-ccg-2 NA coding downstream 551866 34729596 ~ 34729668 (+)
G969859 NA non-coding upstream 18656 34156197 ~ 34156846 (+)
G970041 NA non-coding upstream 38605 34136684 ~ 34136897 (+)
G970039 NA non-coding upstream 39490 34135781 ~ 34136012 (+)
G970023 NA non-coding upstream 64004 34111241 ~ 34111498 (+)
G970281 NA non-coding downstream 834 34178564 ~ 34178802 (+)
G970282 LOC106609167 non-coding downstream 1383 34179113 ~ 34179351 (+)
G970303 NA non-coding downstream 14886 34192616 ~ 34193200 (+)
G970323 NA non-coding downstream 49959 34227689 ~ 34228208 (+)
G970335 NA non-coding downstream 61956 34239686 ~ 34239895 (+)
G970054 LOC106578636 other upstream 4515 34163816 ~ 34170987 (+)
G969752 LOC106578632 other upstream 380441 33794375 ~ 33795061 (+)
G969456 LOC106578609 other upstream 570692 33604513 ~ 33604810 (+)
G969455 LOC106578609 other upstream 571828 33603047 ~ 33603674 (+)
G970283 NA other downstream 1973 34179703 ~ 34180048 (+)
G970489 LOC106578645 other downstream 340096 34516457 ~ 34522340 (+)
G972725 NA other downstream 2072243 36249973 ~ 36250586 (+)
LOC110535658 NA other downstream 3364366 37542062 ~ 37543202 (+)
G973918 NA other downstream 3473408 37651138 ~ 37679368 (+)

Expression


Co-expression Network