LOC110535606 (LOC106578642)


Basic Information

Item Value
gene id LOC110535606
gene name LOC106578642
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 34428058 ~ 34430799 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110535606
AAAGGGCCTACTGGTAAGTTATGTATTAGAAGTGGTTATTTACTATTCTTTACTGTTACTCATATATGATCAGCTTTCATTTAAGGTAAGAAATTATGTTAATTTGATTTAAATTTCAAGTTTAAAGGGGCAGTCTGCAGTTGATgcatacatttaaaaatgtatggTATATACCCACTTGAAGAATGtaactcatgagcttagttcaactgtcttaaCCAATCAAGAACCCACTATATAcattttgtaaacaatgtaattgtaaaccaACACTGTGTGGCCTCAAAACattgttaaaactataattttgatctcATGGTTGCTCAGTCCTTACATCCATAGCTTCTGTCTAGGAAtatgagagtggttacatttcaccagccctcagctgtttaccaaatcaGTGACAGGGTtgacactttgttattgtttgaactgcagattgccccgtTAAATTGATTTAAATGAACTGGGAAAAGTGAAAGAGAACACAGTACATTATCCAATGTAGcattctagtgttgattcaggaaTTAAATTAACACTAAAGGTTTAAACTaccactcagtggtgtaaaataaccccagtgttggtgtAAATAACCAGAGTTGAACCAAAACAACCCCCAGCATGTCACTGTCACTAGCAAACAAAGTCATGGGTGGTACTGGTAACTCAAAGATtcactcaaatggcaccctggtaaatatgcaaataagccTGAAAACCCTACAGCAGGGCCATGCAACTCTGGTCCTGGGTGGCCAAAACATTCTAGGTTATGAATTGTTGTACGGTTCTTCAAAGAGCCAACCCATGTATGGTTCTTCAGACTCCCTAAAATAGTTCCCCTATGGCATTGCGCTCAATAACCTTTTGGTATTTAATATGGTAGAAATGACTGTTCATGTTCATGTATGGGTTACCATTACTGACAATGGCCATCATTTGGATCAGTTCCTTCTCATAGTTCTCACTTAGTTCTTTGCTGATAACCACCCTGATCTGTGTTGGCTACTGGAAGACTATATTTGGCATTTCCTTGTTCCTAAGAAACACCATATCGACCTCCTACAGTAAACTTGTTGATGCTATAGAAATCACGTGGTGTagttcccaaatggcaccctatcccactctggtcagaagtagtacactacataggcaatagggtgccatttgagaaacAGCCTTGGGTTATTCTGTTAAAATCCTCTAGACCATAGGTGTGTGCTGAAACGGTGTAGACCCCACAAATGAAACCACAATGATGTGCAACAACAGTCCTTCACAACTCACTAGTAGCAACTGCAGAGATCTCAATCTCACACCTCTGTAGACTAGTGTCTTGACTTTGTGTCTTTGTTATGTCCTATAGGCTAAGAGCCCACTGCACAATTATGAACTACACTGAGGAGGAGAGACGTGGCTTACACGCCAAAGCCTCCCACTGCGAGAACATCATTTTTGCTAGCTTTTTACATCCTGGTATTCGTGGCCGCTGTGCCTGGCAACACCTTGGCATTGTGCGTGTTCTGTCGTCAGGCCGTCACCTCACCCTCCAAGCTCTTCCTGAGGCACCTGGCCATAGCGGATGTCTCCTACGTGCTGATCCTGCCCATGCGGATGGTCTACCACTTGTCCGACAGCCACTGGCCCTTTGGAGAGGTCCCCTGTCGCCTGGTGGGGTTTCTATTCTACCTCAACATGTACTGCAGTCTCTACTTCATGACCTGCATTGGCCTGGACTGTCTCTTGGTCCTGGTCCTACCGCTTAAGTCACGGGCAATGAGGAAGACCGCGTGGTAAGCCTGTGGATCACAGTGACCACGTCTATGACTCTCTTGCTATTCTCCAACGACCAAACGATGACTGTTCAGGTCGACAACACGACCGTGGTCATGTGTAACCAGCTGTACTTGGAAAATACTTCTCCCAAGGCATTGGTGTCAACCATGGTGGCGTTTTACTATTCCTCTGGTCACCATAGTGGTTTCCTATGTTCTAATCCTATTGAAACTGAGGGGTTGTCAAGCAACAGGAGAGACCAGTTGGAGACAAGGCTATCAGGATGATCATACTCATCATGGTGAACTTCCTGGTTGCTTTCGTGCCCTACCACGTGAACCGTTCCATCTACATTGAGAGACTCACTCATAGCGACATAGAAACTGCGTCCATTAAGGCTCTGGCACGAGCCAATCGAGTCACTTCCTCACTAACCTGTGTGAGTGGAGTGTTGGATCCTATTATGTATTTCTTTCTGGCAAGGAGTTATCAAAGTATACTGCTTCagctgtactgtatagacagggGTGATCTAGtgtcaggtcccccctgtccataatcttattcattatgatttaaaacaaaaaggcaaaactgatcctaggtcAGCACTCCTCCTGCTCTGAGTCTTGAAAAAGTGTATGCTTGAAGTGATTCCATGACTATATTACAGTGATAATGTTCAGTGTTGAATTCTACGGTATGATAGCATTGTGGTGTTGATCAATACAGacttacagtacatacagtaagaATGGTTGGCAGGCCTATGGCCCTGTATGAAAATAAAGCTTATTTCTAGGTTGTTTTATCACCTGTTATTGTATGCATAGTATTCTTGTAAATGGtgtgcatacagtgcattcggaaagtattcagacgccttgactttctccacattttgttacgttactacCTTGTTCAAAAATTgaataaatagttttttccccctca

Function

NR:

description
PREDICTED: uracil nucleotide/cysteinyl leukotriene receptor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110535606 True 2742 mRNA 0.43 1 34428058 34430799

Neighbor

gene id symbol gene type direction distance location
LOC110535604 LOC106578639 coding upstream 501 34183839 ~ 34427557 (+)
LOC110535603 LOC106578637 coding upstream 250328 34175502 ~ 34177730 (+)
LOC110535601 LOC106590111 coding upstream 273180 33908713 ~ 34154878 (+)
LOC110535596 NA coding upstream 737487 33644833 ~ 33690571 (+)
shh LOC106578610 coding upstream 845985 33573702 ~ 33582073 (+)
acad11 acad11 coding downstream 18923 34449722 ~ 34515337 (+)
LOC110535611 LOC106578646 coding downstream 128542 34559341 ~ 34713016 (+)
trnar-ccg-2 NA coding downstream 298797 34729596 ~ 34729668 (+)
trnar-ccg-3 NA coding downstream 300258 34731057 ~ 34731129 (+)
trnar-ccg-4 NA coding downstream 301725 34732524 ~ 34732596 (+)
G970414 NA non-coding upstream 85423 34342269 ~ 34342635 (+)
G970340 NA non-coding upstream 181377 34246324 ~ 34246681 (+)
G970335 NA non-coding upstream 188163 34239686 ~ 34239895 (+)
G970323 NA non-coding upstream 199850 34227689 ~ 34228208 (+)
G970303 NA non-coding upstream 234858 34192616 ~ 34193200 (+)
G970489 LOC106578645 non-coding downstream 85658 34516457 ~ 34522340 (+)
G970497 NA non-coding downstream 101287 34532086 ~ 34534246 (+)
G970534 NA non-coding downstream 157734 34588533 ~ 34588809 (+)
G970536 NA non-coding downstream 159874 34590673 ~ 34590879 (+)
G970549 NA non-coding downstream 177678 34608477 ~ 34608714 (+)
G970283 NA other upstream 248010 34179703 ~ 34180048 (+)
G970054 LOC106578636 other upstream 257071 34163816 ~ 34170987 (+)
G969752 LOC106578632 other upstream 632997 33794375 ~ 33795061 (+)
G969456 LOC106578609 other upstream 823248 33604513 ~ 33604810 (+)
G969455 LOC106578609 other upstream 824384 33603047 ~ 33603674 (+)
G972725 NA other downstream 1819174 36249973 ~ 36250586 (+)
LOC110535658 NA other downstream 3111297 37542062 ~ 37543202 (+)
G973918 NA other downstream 3220339 37651138 ~ 37679368 (+)
lztfl1 LOC106590188 other downstream 3400722 37813177 ~ 37835340 (+)

Expression


Co-expression Network