LOC110535608 (LOC106578644)


Basic Information

Item Value
gene id LOC110535608
gene name LOC106578644
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 34444520 ~ 34450214 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620713.2
aacgCAGCTTGTTTCTGCCCGGACTGTATTTACAGAAACTCGGGTTGCCAGCTGATTCGAGCTGTGTAGACGTGTACTAGCCCGTCGCTTGTGGTCTTTATGTGATTGTCAAGGCTTTTCAATCCAGGCATTTTACACTTGAACAACGGAGTAGTGTGGCTTATTCCTTTTATAGAAACATGACCTCAATCGAAGAGCTGAAGCTGCGAGTGAGGGAGCTTGAGAATGAGTTGATCAAGTGTAAGCAAAAGCGATGTACGGCGATGTGTGCCGAGGAAACTGCCGACAACAACCAACCTCATCACAGACCAAGGATCGACAAAATGAGTGCAGAAGTAGTGGATTCAAACCCTTACAGTCGTCTGATGGCTTTGAAGCGAATGGGCATTGTTGAAGATTACGAGAAAATCAGGACGTTCACTGTAGCTGTGGTGGGTGTTGGAGGAGTTGGAAGTGTGACTGCAGAAATGCTCACAAGATGTGGCATTGGCAAGCTCATCCTGTTTGACTATGACAAAGTGGAGCTGGCCAATATGAACAGGCTGTTCTTCCAGCCTCACCAGGCCGGCCTCAGCAAAGTAGAGGCAGCTGAACACACACTCAGGAATATCAACCCAGATGTGCAGTTTGAGACCCACAACTACAACATCACCACCATGGAACATTTCGCACATTTCATGGATCGCATAAGTTATGGGGCGCTTCAGGAAGGAAAGGCCGTAGACCTGATTCTGAGTTGTGTGGACAACTTTGAGGCCCGGATGGCCATCAACGCAGCGTGTAACGAGCTGGGTCAGACCTGGATGGAGTCGGGTGTGAGTGAGAATGCTGTGTCTGGACACATCCAGCTCATCATCCCGGGGGAGACGGCCTGCTTCGCATGTGCTCCTCCCCTGGTGGTGGCGGCCAACATTGATGAGAAGACCCTGAAGAGGGAGGGGGTGTGTGCTGCCAGCCTACCCACCACCATGGGTGTGGTGGCAGGGATCCTGGTCCAAAACGTCCTCAAGTACCTGTTGAAGTTTGGCACAGTCAGCCATTACCTGGGCTACAACGCCATGCAGGACTTCTTCCCCACTATGGCCATGAAGGCCAACCCCACATGTGATGACCGCTACTGCAGGAAACAGCAGGACGACTATAAGAAGAAAGAGGCCGAGCGACCAAAAAAGGTTgtagaggaggtggtggaggaggaagtggTTCACGAGGAGAACGACTGGGgtATTGAGCTGGTGTCGGAGCAGACAGAAGAGGAACTCCATGCGGCTTCAGGCCCTGTCCCCGACCTCCCAGAAGGCATCACTGTGGCCTACACCATCCCTGAGAAGGAGACCGGGGTGTCAGGAGGGGAGACGGTGGAGGAAACGGAACAGAGTCTAGAAGAGCTGATGGCCCAGATGAGAAAGATGTAACCGGGACCAGGAAGACACCTCAACTATCAGACGGCCATCCTCATCGTCGTGCATCCGCGTATCTCCGCAACATTGCAGTGAACCTACCACCCTTTTTTTAATAACGGAGCATTGACACCGTACAGTATACCCCCTGCAATGGAGCTTTGCATCTCCACGTTCTTAAATCAAGCACGATTTTTCATACCCACGTACTACAGTATCAATACGACTTAATGCATGTACTTCTGCTCCTTTGACATGAAAGGGAATGCAATGCATGGTTAATGAACTCAAGTGCTGCTGTTTATGATCTTCATATTCCCCAAGGCTGTAAATTTACTAGTGTAAGCCTGTTCAATATGGAAGCATATAACTGTTGAAATTCAATTTGAATTTCAGCATCGGAGAGCACAAACTGGACGCTGAAATGTATGTAATTATCTTAAATAAACTTTTGCTTGATGTAATGGACCAGGTACGTACAGATGTAAGCTATGTAATTCATTATGCTTGTTGGGCCGAGAGGAAATACTGTTGTAACACTCAGCGTTGAATAAGTAATTGCTGTTATGGATAGTCTCAGACCAACAATTACTACTGTATGGAATGCAAATTAATTAAATTGTTAATGCATTACATCCTTTCTTCTTCTAAAACATGTTGAATGATGGCGAATGAGGCCTAATGTTTCTCTGCATGACAAACCTGCCTTAAATGTATCTGTTCCATGTCTAGCTCTGGTCCGTAGTGCGATAACGAGTGGCCTCTGCTACATGTTGTGGCGCTATggggcggcagagtagcctagtggttagagcattggactagtaaccgaaaggttgcaagtttaaatccccgagctgtacaaatctgtcgttctgcccctgaacaaggcagttaacccactgttcctaggccgtcattgaaaataagaatttgttcttaactgacttgcctagttaaaggttaaaacaATGGACCAGTGCTACTCTCAGCTGTTTAAACTGATATAGCTGAAACTGTACTGACTAACTCTCTGTTTCCACACTTTGTTTCAATAAAGTATTTATTAGCCAGTT
>XM_021620712.2
CAGAAGGGGTCTGGATAAGGAAGGTGGGGTTGGATTGTCCAGCACTGGAATGATCAGACACGGAAGGCATGGACAGGGATTCACTCCATTTTACGAAGTATGCTAATTTCCATGGAACTTGAACACTTCAGATAAAAGAAACATGACCTCAATCGAAGAGCTGAAGCTGCGAGTGAGGGAGCTTGAGAATGAGTTGATCAAGTGTAAGCAAAAGCGATGTACGGCGATGTGTGCCGAGGAAACTGCCGACAACAACCAACCTCATCACAGACCAAGGATCGACAAAATGAGTGCAGAAGTAGTGGATTCAAACCCTTACAGTCGTCTGATGGCTTTGAAGCGAATGGGCATTGTTGAAGATTACGAGAAAATCAGGACGTTCACTGTAGCTGTGGTGGGTGTTGGAGGAGTTGGAAGTGTGACTGCAGAAATGCTCACAAGATGTGGCATTGGCAAGCTCATCCTGTTTGACTATGACAAAGTGGAGCTGGCCAATATGAACAGGCTGTTCTTCCAGCCTCACCAGGCCGGCCTCAGCAAAGTAGAGGCAGCTGAACACACACTCAGGAATATCAACCCAGATGTGCAGTTTGAGACCCACAACTACAACATCACCACCATGGAACATTTCGCACATTTCATGGATCGCATAAGTTATGGGGCGCTTCAGGAAGGAAAGGCCGTAGACCTGATTCTGAGTTGTGTGGACAACTTTGAGGCCCGGATGGCCATCAACGCAGCGTGTAACGAGCTGGGTCAGACCTGGATGGAGTCGGGTGTGAGTGAGAATGCTGTGTCTGGACACATCCAGCTCATCATCCCGGGGGAGACGGCCTGCTTCGCATGTGCTCCTCCCCTGGTGGTGGCGGCCAACATTGATGAGAAGACCCTGAAGAGGGAGGGGGTGTGTGCTGCCAGCCTACCCACCACCATGGGTGTGGTGGCAGGGATCCTGGTCCAAAACGTCCTCAAGTACCTGTTGAAGTTTGGCACAGTCAGCCATTACCTGGGCTACAACGCCATGCAGGACTTCTTCCCCACTATGGCCATGAAGGCCAACCCCACATGTGATGACCGCTACTGCAGGAAACAGCAGGACGACTATAAGAAGAAAGAGGCCGAGCGACCAAAAAAGGTTgtagaggaggtggtggaggaggaagtggTTCACGAGGAGAACGACTGGGgtATTGAGCTGGTGTCGGAGCAGACAGAAGAGGAACTCCATGCGGCTTCAGGCCCTGTCCCCGACCTCCCAGAAGGCATCACTGTGGCCTACACCATCCCTGAGAAGGAGACCGGGGTGTCAGGAGGGGAGACGGTGGAGGAAACGGAACAGAGTCTAGAAGAGCTGATGGCCCAGATGAGAAAGATGTAACCGGGACCAGGAAGACACCTCAACTATCAGACGGCCATCCTCATCGTCGTGCATCCGCGTATCTCCGCAACATTGCAGTGAACCTACCACCCTTTTTTTAATAACGGAGCATTGACACCGTACAGTATACCCCCTGCAATGGAGCTTTGCATCTCCACGTTCTTAAATCAAGCACGATTTTTCATACCCACGTACTACAGTATCAATACGACTTAATGCATGTACTTCTGCTCCTTTGACATGAAAGGGAATGCAATGCATGGTTAATGAACTCAAGTGCTGCTGTTTATGATCTTCATATTCCCCAAGGCTGTAAATTTACTAGTGTAAGCCTGTTCAATATGGAAGCATATAACTGTTGAAATTCAATTTGAATTTCAGCATCGGAGAGCACAAACTGGACGCTGAAATGTATGTAATTATCTTAAATAAACTTTTGCTTGATGTAATGGACCAGGTACGTACAGATGTAAGCTATGTAATTCATTATGCTTGTTGGGCCGAGAGGAAATACTGTTGTAACACTCAGCGTTGAATAAGTAATTGCTGTTATGGATAGTCTCAGACCAACAATTACTACTGTATGGAATGCAAATTAATTAAATTGTTAATGCATTACATCCTTTCTTCTTCTAAAACATGTTGAATGATGGCGAATGAGGCCTAATGTTTCTCTGCATGACAAACCTGCCTTAAATGTATCTGTTCCATGTCTAGCTCTGGTCCGTAGTGCGATAACGAGTGGCCTCTGCTACATGTTGTGGCGCTATggggcggcagagtagcctagtggttagagcattggactagtaaccgaaaggttgcaagtttaaatccccgagctgtacaaatctgtcgttctgcccctgaacaaggcagttaacccactgttcctaggccgtcattgaaaataagaatttgttcttaactgacttgcctagttaaaggttaaaacaATGGACCAGTGCTACTCTCAGCTGTTTAAACTGATATAGCTGAAACTGTACTGACTAACTCTCTGTTTCCACACTTTGTTTCAATAAAGTATTTATTAGCCAGTT

Function

NR:

description
ubiquitin-like modifier-activating enzyme 5

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0048037 obsolete cofactor binding molecular_function
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor molecular_function

KEGG:

id description
K12164 UBA5, UBE1DC1; ubiquitin-like modifier-activating enzyme 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620713.2 False 2476 mRNA 0.47 12 34444520 34449667
XM_021620712.2 True 2439 mRNA 0.47 13 34444520 34450214

Neighbor

gene id symbol gene type direction distance location
LOC110535602 LOC106578636 coding downstream 273435 34163743 ~ 34171085 (-)
LOC110535600 LOC106578631 coding downstream 581030 33859835 ~ 33863490 (-)
LOC110535599 LOC106578604 coding downstream 584897 33848052 ~ 33859623 (-)
LOC110535598 LOC106578632 coding downstream 649334 33787375 ~ 33795186 (-)
trnar-ccg NA coding downstream 709796 33734652 ~ 33734724 (-)
LOC110535609 LOC106578643 coding upstream 40831 34491045 ~ 34499127 (-)
LOC110535610 LOC106578645 coding upstream 66241 34516455 ~ 34522431 (-)
LOC110536615 NA coding upstream 83073 34533287 ~ 34535122 (-)
LOC110535616 LOC106578707 coding upstream 360009 34810223 ~ 34978953 (-)
LOC110535617 LOC106578706 coding upstream 775551 35225765 ~ 35355426 (-)
G970725 NA non-coding downstream 17000 34425762 ~ 34427520 (-)
G970734 NA non-coding downstream 55748 34385803 ~ 34388772 (-)
G970704 NA non-coding downstream 99872 34344359 ~ 34344648 (-)
G970650 NA non-coding downstream 103932 34247473 ~ 34340588 (-)
G970624 NA non-coding downstream 232579 34211729 ~ 34211941 (-)
G970802 NA non-coding upstream 53952 34504166 ~ 34505839 (-)
G970859 NA non-coding upstream 136989 34587203 ~ 34587433 (-)
G970861 NA non-coding upstream 138310 34588524 ~ 34588731 (-)
G970862 NA non-coding upstream 140123 34590337 ~ 34590555 (-)
G970865 NA non-coding upstream 148910 34599124 ~ 34599324 (-)
G970066 NA other downstream 569248 33874814 ~ 33875272 (-)
G968868 NA other downstream 1777030 32666752 ~ 32667490 (-)
LOC110535581 LOC106578582 other downstream 1894934 32489195 ~ 32549643 (-)
G967535 NA other downstream 2391327 32050960 ~ 32053193 (-)
G966663 LOC100194703 other downstream 3053176 31391036 ~ 31391344 (-)
G971137 NA other upstream 386758 34836972 ~ 34838926 (-)
G972383 LOC106578698 other upstream 1422455 35872669 ~ 35873258 (-)
G974622 LOC106578671 other upstream 2763670 37213884 ~ 37214896 (-)
G974756 NA other upstream 2964164 37414378 ~ 37415635 (-)

Expression


Co-expression Network