XLOC_028377 (agbl5)


Basic Information

Item Value
gene id XLOC_028377
gene name agbl5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 737539 ~ 760560 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055113
GTCGCCTAGTGATCGCCGAGGAGGACGAATAAACACAGgtatagAGATGAGTGTTGTGTGATGGTCATGGAGATCCGCGTGGGCAGTGCGGTGTTCAGCTCTCGCTTTGACTCTGGGAATCTTGCGCGTGTGGAGCGAGTGGAGGCTTCAGAAGCTGCCGGTGAGAGCAGCAGATCCGCTTCAGTCCCGCAGCCCGACTACGAGTTCAACGTGTGGACCAGACCCGACTGCGCCAGCACAGAGTTCGAGAACGGAAAccgGTCATGGTTTTACTTCAGTGTGCGCGGGCTGCTGCCTGGAAAACTGCTGAAGATCAACATGATGAACATGAACAAGCAGAGCAAGCTGTACACGCAGGGCATGGCTCCGTTCGTCCGCACGCTGCCCGTCAAAACACGCTGGGAACGGGTTCGAGACAGACCCACGTTTGAGatGTCTGACAGTCAGTTCATCCTGTCGTTTGTTCATCGTCTGCTGGACGTTCGAGGCGTCACCACCTACTTCTCCTTCTGCTACCCGTTCTCATACGCCGAGTGTCAGGACATGATGCTGCAGCTCGACCACAAGTTCCTGAGCAGCACCAGCACGCACACGGCctgcagtcctCCAGAGAGCATCTATTATCACCGTGAGCTGCTCTGTCACTCTCTGGACGGCCACCGTGTGGATCTGATCACCGTGTCCTCATGTCACGGCCTGCTGGAGGAGCGAGAGCCGCGGCTGGACAAACTCTTCCCAGACCTCAGCACTGCACGCTCGCACCGCTTCACCGGCAAACGGgtgttcTTCGTGAGCAGCAGGGTTCACCCTGGAGAAACGCCGTCCAGCTTCGTGTTCAATGGTTTTCTGAACTTCATCTTGAGTCAGGAGGATCCGCGCGCTCAGACGCTTCGCCGCATGTTCGTCTTTAAGCTCATCCCGATGCTGAACCCGGACGGGGTCGTCAGGGGTCACTACAGgaCGGACTCTCGCGGTGTGAATCTGAACAGACAGTATGTGAACCCCAGTCCAGATTTGCATCCTTCAATCTACGGCGCCAAATCTTTGATGCTCTACCACCACATCCACAACCGCCTTGGCCATGCCTCTGGCTCCGCCCTCAAAACCTCCAACCAATCAAACACCAGCCCTCCTGTGGCCACGCCCACTGAGCGGGAGCGCTGCATGAACTTGCTTAATGAGGCGGAGCGAGGAGAGGGTCCGACTTTTGACCTCTCCGAGATCCCCATGCAGCTGGAAGAGAGCTGGGAGAAAAGCGGAGTCCAGAGAGAGGCGGAGCATTCCGATGAGAACGAATCAGCACAGAGCAGAGGAGAAACAAACTCTGCCCCCTCAGAGCAAGTCCCGCCTCAGGAGAGCGGAGTGGCGTACTATATAGATTTGCATGGCCACGCCTCCAAAAGAGGATGCTTTATGTACGGCAACAACCTGACAGAGGAGAgccagcaggTGGAGAACATGCTGTATGCGAAGCTGATCTCCCTAAACTGTGCACACTTTGATTTCCTGGGCTGTAATTTCTCGGAGAAGAACATGTACGCTCGGGACAAACGAGACGGTCAGTCAAAGGAAGGCAGCGGACGAGTGGCCATTCACAAAGCCATGGGCCTGGTACACAGCTACACACTGGAGTGTAACTACAACACAGGCCGCTCTGTGAACACCATCCCTCCCGCCTGTCATGATAACGGACGAGCAACGCCACCTCCTCCGCCTGCTTTCCCTCCCAAATACACCCCGGAGGTGTACGAGCAGGTGGGCCGTGCGGTGGCGGTGGCAGCGCTGGACATGGCAGAGTGCAACCCGTGGCCACGACTGGTTCTGTCTGAACACAGCAGCCTGCTGAACCTGCGTGCATCCATACTCAAACACGTGCGCAACAGCACCGGCCTGACCTCCAACAACCGCAGAAACACGCACTGCAAAACCAGCAGCAGCCCGCCCAAACCTGCaaGTCTGAGCACATCTGCATCTGAGAACTCCCTGAATCGCACACGCAGTACCACTAATGTTCAGGGCAGCCGGCAGACGCCTCAGCTCAAGAGTTCTCCCAGCTTCACCTTCGGCACCACTGCACACCGGCCCTCACACAGGAGCCTGGGCCCCGTCAGAGagTGTAAAGCGCAGGAGAAGAGGCGTCCTCCTCCCCCTCCtcttcctcatcatcatcatcagcagcatcaGCGTCTCTCTGTCCGGCTGTCAGCCCCTGTGCGGGCTCCTCTGTCCCCCTCCTCCTCATCCTCGTCCTCCTCCTCGTCTCCGTCCTCCTCGTCCTCAGCCCCAGGCCCCGGCTCCATCAGTCTGGCAGGCAACAGCTGTCCAGAGTTCCGCCCGGCCAACCAGATAAAAGAGCTGCGTGGAGGGCGGGGCAAGGGAGGCAGATCAGGCCCTGCCTACTGTCACTCATCACAGCAGAGGACTGCGCTCACAACAAAGGAGCCGCTGCAGGACTCTCTGGACATCCTGACGTCTATAGAGTACAGCAGATGTGAGCTTCAGCCGCGGCCCAGCCGTATCCCTGTGAGGAGAGAGCTTCAGTCTTCTGTCATTCCTCTcagcagcacagaaacaccaaccatgAGAGTGTGGAAACTGATCAAACCTGGCCTCAAAAAACACCTGGCAGGAGTTTCTGGTAAAGACCGTCTGTCAACTAAAGCTCTGCTGAAGAACTCCAGCAGACAGACAGATCAGCACATACACAGATCTCTGCAGACCTGAGAAGCTGCTGATGGGAAGTGTTGGATTTGGCCGAAAAGTGGAGGAtcatgtgttgtgttgtgttttagaCTTACAGACACAAAACGAGTTGTCATCGCACTAAAACCATAGCATTACGTTGTGTTTTTTTAGGAAACGCTTTTAAACGTGTgacctgagctgctgctgctttggtttgttttgtaatttaaaaatgatGTAAAGCGATTGTGGACATTTATTCCTGAGCAGGATTGTGGTGAACATTTTATTGTGGTGGAATCATAATGGACCAAACTCAGTGTGAAATACTGAGATCATCGTGTTTAATGGTGAAATgcagagttgtgtgtgtgtgtgtgtgtttaagaagCAATAAATGTGTACGTGTTTCTGAAAGAA
>TCONS_00055114
tgtgtgtctgtgtgtgtgtgcaggtgttcTTCGTGAGCAGCAGGGTTCACCCTGGAGAAACGCCGTCCAGCTTCGTGTTCAATGGTTTTCTGAACTTCATCTTGAGTCAGGAGGATCCGCGCGCTCAGACGCTTCGCCGCATGTTCGTCTTTAAGCTCATCCCGATGCTGAACCCGGACGGGGTCGTCAGGGGTCACTACAGgaCGGACTCTCGCGGTGTGAATCTGAACAGACAGTATGTGAACCCCAGTCCAGATTTGCATCCTTCAATCTACGGCGCCAAATCTTTGATGCTCTACCACCACATCCACAACCGCCTTGGCCATGCCTCTGGCTCCGCCCTCAAAACCTCCAACCAATCAAACACCAGCCCTCCTGTGGCCACGCCCACTGAGCGGGAGCGCTGCATGAACTTGCTTAATGAGGCGGAGCGAGGAGAGGGTCCGACTTTTGACCTCTCCGAGATCCCCATGCAGCTGGAAGAGAGCTGGGAGAAAAGCGGAGTCCAGAGAGAGGCGGAGCATTCCGATGAGAACGAATCAGCACAGAGCAGAGGAGAAACAAACTCTGCCCCCTCAGAGCAAGTCCCGCCTCAGGAGAGCGGAGTGGCGTACTATATAGATTTGCATGGCCACGCCTCC

Function

symbol description
agbl5 Predicted to enable metallocarboxypeptidase activity and tubulin binding activity. Acts upstream of or within chordate embryonic development and cilium assembly. Predicted to be located in several cellular components, including cytosol; midbody; and mitotic spindle. Is expressed in several structures, including Kupffer's vesicle; axis; forerunner cell group; nervous system; and pronephros. Human ortholog(s) of this gene implicated in retinitis pigmentosa 75. Orthologous to human AGBL5 (AGBL carboxypeptidase 5).

GO:

id name namespace
GO:0043009 chordate embryonic development biological_process
GO:0035611 protein branching point deglutamylation biological_process
GO:0006508 proteolysis biological_process
GO:0051607 defense response to virus biological_process
GO:0060271 cilium assembly biological_process
GO:0072686 mitotic spindle cellular_component
GO:0005829 cytosol cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0030496 midbody cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004180 carboxypeptidase activity molecular_function
GO:0004181 metallocarboxypeptidase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008237 metallopeptidase activity molecular_function
GO:0015631 tubulin binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
ko01002 Peptidases and inhibitors

ZFIN:

id description
ZDB-GENE-040822-29 Predicted to enable metallocarboxypeptidase activity and tubulin binding activity. Acts upstream of or within chordate embryonic development and cilium assembly. Predicted to be located in several cellular components, including cytosol; midbody; and mitotic spindle. Is expressed in several structures, including Kupffer's vesicle; axis; forerunner cell group; nervous system; and pronephros. Human ortholog(s) of this gene implicated in retinitis pigmentosa 75. Orthologous to human AGBL5 (AGBL carboxypeptidase 5).

Ensembl:

ensembl_id ENSDARG00000045900

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055113 False 3105 mRNA 0.55 16 737539 760560
TCONS_00055114 True 641 lncRNA 0.56 2 751290 753073

Neighbor

gene id symbol gene type direction distance location
XLOC_028375 CU855889.2 coding downstream 3192 701612 ~ 734347 (-)
XLOC_028376 NA coding downstream 5055 723830 ~ 732484 (-)
XLOC_028374 rtcb coding downstream 52106 676710 ~ 685433 (-)
XLOC_028373 NA coding downstream 340720 393551 ~ 396819 (-)
XLOC_028372 dynlt1 coding downstream 347097 386435 ~ 390442 (-)
XLOC_028378 tmem214 coding upstream 3540 764100 ~ 779796 (-)
XLOC_028379 mapre3b coding upstream 23084 783644 ~ 797858 (-)
XLOC_028380 dpysl5b coding upstream 38136 798696 ~ 815871 (-)
XLOC_028381 sobpb coding upstream 58368 818928 ~ 858434 (-)
XLOC_028382 crybg1b coding upstream 100884 861444 ~ 890220 (-)
XLOC_028362 NA non-coding downstream 618345 116322 ~ 119194 (-)
XLOC_028360 NA non-coding downstream 636162 99991 ~ 101377 (-)
XLOC_028383 NA non-coding upstream 139402 899962 ~ 904022 (-)
XLOC_028385 NA non-coding upstream 159192 919752 ~ 921761 (-)
XLOC_028389 NA non-coding upstream 250400 1010960 ~ 1013095 (-)
XLOC_028391 NA non-coding upstream 261756 1022316 ~ 1023700 (-)
XLOC_028392 NA non-coding upstream 268276 1028836 ~ 1036046 (-)

Expression


Co-expression Network