XLOC_028378 (tmem214)


Basic Information

Item Value
gene id XLOC_028378
gene name tmem214
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 764100 ~ 779796 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055115
CCTCTCATTGGTCAGGTCCGAACAGTTCTCGAGGAGTTTAGCAGGCTAGCAAGAGTGTTTCCTCGAATATTAAGAttgttacattaatataaaacacattttttagacgataatatctataatatataatcaATACCGCATATCGTTTTTGATGGGCAGGGAttgactgaaaaaaatatatgaaaaggaAAAAGATTTACCAGAGCGACTGATCTCCAGTGAACGTCTTGATCTGGCCGGAAGAGCGCAGAGTGGACGCGCTGGAAACAGGAAACAGTTCCTCTCACGGCAAACAGACGTGGCATAAGAACCGTTGGTTTAATTCGATCAATActgttgatttttaattattgtctGTCTGCTTGAGTTGGACATTATGGCCTCTGGTGTGGGCAAATGGGAGGTGGTGAAGAAAGGGAAGAAAGCGACCAGCAGCTCCAAAACTCAGGACAAGAAATCAGCAAGGAAAGCGCTGAGAGAGGCCAACACTGACAGCAACCACGTGATGTCCGAGACCATATTCGACGGCTTCGAGAAGATGGTGAAGAAGCAGAATAAAGAGCAGGTTCCTCCACCGGTGGAAACCCAGCAGAAGAAACCAAACGCAGGAAAGCAGACCAAAAAACCCCCGGCCAACAGCAGCCCCAAACCCGTCCATTACAAGACTCTGGAGGAGGCGGTCAAAGCCTTGAATATCGCAGAGCTGAAGCAGCAGCTGGAGAAAAGTCAGACTCTGTTTCCTGAGAATCCGTCCATCTGGGTGAAGGATCTGGCTGGATATCTGAACTACAAACTCCCAGCTCCAGACACAGACCCCACACTCAGCAGCTACGCTCACGATTACCCATACTGCCTCGCTGGGAAGGAGCTGAAGGCCATTATTAAGAACCTGCTGGGCAAATGTTCAGACGCGCTGCCCGAGTTCTTTGACCATTGCGTCTTCACCATGCTGAGAGAACAGGACCGACAGCCGAGTGATCCTTTGCACGGCTACAGGATGTGCATTCAGGCTCTCATGCAGGACAAACCCAAAATCGCCACGCTGAACCTCTCGGACCATCTGGAGCTGCTGCGCTCTCATCAGAACCGTCCGCTCAAGTGTCTGACCATCATGTGGGCTCTGGGACAGGCAGGATTCTACGACCTCAGCCAGGGCATCAGAGTCTGGTTGGGAATCATGCTCCCTGTTCTCGGGATGAAGGCTCTCTCCGCATATGCCATCGCTTATCTGGAGCGACTGCTGACTCTTCATGCCAACCTGACCAAAGGCTTCGGGATAATGGGGCCCAAGGAGTTCTTCCCTTTGCTGGACTTTGCTTACATGCCTAAAAACGCTCTTTCACAGAGTCTGCAGGAGCAGTTGTGTCGACTGTACCCACGGATAAAGGTTCTGGCCTTTGGTGCAAAACCTGAATCAACACTGCACACATATTTCCCATCATTCCTGTCACGAGCCACACCCAACTGTCCTGGTGCCATGAAGAAAGAGCTGCTGAGGAGTCTGACGGAGTGTCTGAGCGTGGACAGTCAGAGTCTGAGTGTTTGGAGGCAGCTGTACACCAAACACCTGCCGCAGTCCAGcctTCTGCTCAATCACCTGCTGAAGACCTGGAAAACACTCCCTCTGAAGTTGCAGAAGAGTCTTCAGGACACCATTCAGTCATTCAGAGTGACCAATGATGAGCTGCAGAGCGGCGCACACACACAGGAGATCAGCGACTGCAACTCACTCtgccagtctCTGCAGCTGAAGATGCATGGTCAGAGTGTGCCGTGGTGGCGTGTGCTGCTCatgctgctggtgtgtgtgttgGGTTTCGTGGCTCATGACGTCAGGACTCAGGGCTCCTTCAGTGACTCCAGAACTGCTGTGTTTCTGGAGCAGCTCGGGGTCTCCGGCGCATCCCAGCAGGCCTGGAGCCGCGTCTCACACTATAGCCAGCAGAGCCTCAGCTGGCTGTCTGAGAACACGCCATATTATTACTCGAGTGCGGTGACTGCGGTGCGTCCGCTGCTGGAGTACGGACAGGAGTATGTGAAGCTGGCGGTGTTGAAGATCGCACACATGAGCTCAGAGCTGATGCTGTGGATGCAGGAGAACCTGCCGCTGCTGCTGCACTGGATTCACGCCAATACTCCAGAGAGTGTGTTTCAGTTCCTGGAGTTTCTGAAGGGTCTGTTGCTGTTTGTCCATGAGCAGATGATTCTGCCGGCTCTGCATTATCTAAACACAGCACTGCAGCTCGCCTGGAGGAGTCTGCAGGAGTCCTGCAAtggaGAGGTATCTCTGCACTGTTTACAGGATCACGTTCGCTCCTTCACCAACAGCACCTGGATTTACCTGCAGGACGCCACGTCTGCCATCAAGAGCCGAGCGCAGGAGCTGCTGTCCTGAGCCCCAACACTGCGGctcttctttcttctttcttttttttttgtttgtcagtgTGCATGAGATTTTATATCTGTTGTGCTGACGGTTCTGTCTTTTATGCAGATGTTTTTTTCAATGGggtttattttacacaaaaattGCCAATCCAGACtgagttggagagagagagagagagagagagagagacatgttATTTAACATCCCGCTGAACACTGACTACTGAACACTGAAGATGACCACATTACTGAAACACGCACGAGTCCTGGAAGAGGAGCTGATTTCATAGTTtgtaaatgatttatatataaatgaataaaacaatgctGTTCAGTCCTGA
>TCONS_00055116
GAAAACAACATCAGtccctgctctctctctctctctctctctctctctctttcagcctTCTGCTCAATCACCTGCTGAAGACCTGGAAAACACTCCCTCTGAAGTTGCAGAAGAGTCTTCAGGACACCATTCAGTCATTCAGAGTGACCAATGATGAGCTGCAGAGCGGCGCACACACACAGGAGATCAGCGACTGCAACTCACTCtgccagtctCTGCAGCTGAAGATGCATGGTCAGAGTGTGCCGTGGTGGCGTGTGCTGCTCatgctgctggtgtgtgtgttgGGTTTCGTGGCTCATGACGTCAGGACTCAGGGCTCCTTCAGTGACTCCAGAACTGCTGTGTTTCTGGAGCAGCTCGGGGTCTCCGGCGCATCCCAGCAGGCCTGGAGCCGCGTCTCACACTATAGCCAGCAGAGCCTCAGCTGGCTGTCTGAGAACACGCCATATTATTACTCGAGTGCGGTGACTGCGGTGCGTCCGCTGCTGGAGTACGGACAGGAGTATGTGAAGCTGGCGGTGTTGAAGATCGCACACATGAGCTCAGAGCTGATGCTGTGGATGCAGGAGAACCTGCCGCTGCTGCTGCACTGGATTCACGCCAATACTCCAGAGAGTGTGTTTCAGTTCCTGGAGTTTCTGAAGGGTCTGTTGCTGTTTGTCCATGAGCAGATGATTCTGCCGGCTCTGCATTATCTAAACACAGCACTGCAGCTCGCCTGGAGGAGTCTGCAGGAGTCCTGCAAtggaGAGGTATCTCTGCACTGTTTACAGGATCACGTTCGCTCCTTCACCAACAGCACCTGGATTTACCTGCAGGACGCCACGTCTGCCATCAAGAGCCGAGCGCAGGAGCTGCTGTCCTGAGCCCCAACACTGCGGctcttctttcttctttcttttttttt
>TCONS_00055117
agTTGCAGAAGAGTCTTCAGGACACCATTCAGTCATTCAGAGTGACCAATGATGAGCTGCAGAGCGGCGCACACACACAGGAGATCAGCGACTGCAACTCACTCtgccagtctCTGCAGCTGAAGATGCATGGTCAGAGTGTGCCGTGGTGGCGTGTGCTGCTCatgctgctggtgtgtgtgttgGGTTTCGTGGCTCATGACGTCAGGACTCAGGGCTCCTTCAGTGACTCCAGAACTGCTGTGTTTCTGGAGCAGCTCGGGGTCTCCGGCGCATCCCAGCAGGCCTGGAGCCGCGTCTCACACTATAGCCAGCAGAGCCTCAGGTCAGACTACAGCACACAGGATTTATTCTGACTACAGTACAGGGTTATTATAACTCAGCAGGTCAATGTTATCAGCTTTCTTAAAGTACCAATGAAATCCAAACTAaccatatttttttg
>TCONS_00055118
CAGGAGCAGTTGTGTCGACTGTACCCACGGATAAAGGTTCTGGCCTTTGGTGCAAAACCTGAATCAACACTGCACACATATTTCCCATCATTCCTGTCACGAGCCACACCCAACTGTCCTGGTGCCATGAAGAAAGAGCTGCTGAGGAGTCTGACGGAGTGTCTGAGCGTGGACAGTCAGAGTCTGAGTGTTTGGAGGCAGCTGTACACCAAACACCTGCCGCAGTCCAGGTGAGCAGAGTCTCTGAGCGTGTTTGCATGtgcaccaatactccgattttaatacgaTCAAGAcagtactctgattaagagtcttccAGTAAACAGAGGTTTTAGATGACATCAATCCAACTAAAGTATTAAACACAAGTCGAATGAAGACACGTGGAGTTTTCCTATTTCAGTGGCTTTATTGAAGTGCAGGACAGACATGGAAACACtgaaatcaaactattactgtcgtgtaggactttttgacacattttgcaacaggatagtccacacacacggctgtttgggCTCACAGACATGCACATCTt

Function

symbol description
tmem214 Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and endoplasmic reticulum. Orthologous to human TMEM214 (transmembrane protein 214).

GO:

id name namespace
GO:0005783 endoplasmic reticulum cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-110307-2 Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and endoplasmic reticulum. Orthologous to human TMEM214 (transmembrane protein 214).

Ensembl:

ensembl_id ENSDARG00000016968

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055115 False 2732 mRNA 0.50 16 764100 779796
TCONS_00055116 False 910 lncRNA 0.55 6 764396 769820
TCONS_00055117 False 445 lncRNA 0.51 2 769043 769631
TCONS_00055118 True 538 lncRNA 0.46 2 771352 772392

Neighbor

gene id symbol gene type direction distance location
XLOC_028377 agbl5 coding downstream 3540 737539 ~ 760560 (-)
XLOC_028375 CU855889.2 coding downstream 29753 701612 ~ 734347 (-)
XLOC_028376 NA coding downstream 31616 723830 ~ 732484 (-)
XLOC_028374 rtcb coding downstream 78667 676710 ~ 685433 (-)
XLOC_028373 NA coding downstream 367281 393551 ~ 396819 (-)
XLOC_028379 mapre3b coding upstream 3848 783644 ~ 797858 (-)
XLOC_028380 dpysl5b coding upstream 18900 798696 ~ 815871 (-)
XLOC_028381 sobpb coding upstream 39132 818928 ~ 858434 (-)
XLOC_028382 crybg1b coding upstream 81648 861444 ~ 890220 (-)
XLOC_028383 NA coding upstream 120166 899962 ~ 904022 (-)
XLOC_028362 NA non-coding downstream 644906 116322 ~ 119194 (-)
XLOC_028360 NA non-coding downstream 662723 99991 ~ 101377 (-)
XLOC_028385 NA non-coding upstream 139956 919752 ~ 921761 (-)
XLOC_028389 NA non-coding upstream 231164 1010960 ~ 1013095 (-)
XLOC_028391 NA non-coding upstream 242520 1022316 ~ 1023700 (-)
XLOC_028392 NA non-coding upstream 249040 1028836 ~ 1036046 (-)

Expression


Co-expression Network