trnar-ccg-22


Basic Information

Item Value
gene id trnar-ccg-22
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 34763488 ~ 34763560 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>trnar-ccg-22
GatccagtggcctaatggataaggcatcaGCCTCCGGAGCTggggattgtgggttcaagtcccacctGGGTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnar-ccg-22 True 73 mRNA 0.58 1 34763488 34763560

Neighbor

gene id symbol gene type direction distance location
trnar-ccg-21 NA coding upstream 1411 34762005 ~ 34762077 (+)
trnar-ccg-20 NA coding upstream 2894 34760522 ~ 34760594 (+)
trnar-ccg-19 NA coding upstream 4379 34759037 ~ 34759109 (+)
trnar-ccg-18 NA coding upstream 5845 34757571 ~ 34757643 (+)
trnar-ccg-17 NA coding upstream 8772 34754644 ~ 34754716 (+)
trnar-ccg-23 NA coding downstream 1399 34764959 ~ 34765031 (+)
trnar-ccg-24 NA coding downstream 2884 34766444 ~ 34766516 (+)
trnar-ccg-25 NA coding downstream 4361 34767921 ~ 34767993 (+)
LOC110535615 LOC106578708 coding downstream 19309 34782869 ~ 34789746 (+)
LOC110535618 LOC106578705 coding downstream 664461 35428021 ~ 35442236 (+)
G970942 NA non-coding upstream 37607 34725630 ~ 34725881 (+)
G970936 NA non-coding upstream 44294 34718936 ~ 34719194 (+)
G970934 NA non-coding upstream 46788 34716356 ~ 34716700 (+)
LOC110535611 LOC106578646 non-coding upstream 50472 34559341 ~ 34713016 (+)
G970557 NA non-coding upstream 144229 34618995 ~ 34619259 (+)
G970969 NA non-coding downstream 9597 34773157 ~ 34773366 (+)
G971016 NA non-coding downstream 81677 34845237 ~ 34845761 (+)
G971261 NA non-coding downstream 248271 35011831 ~ 35016554 (+)
G971385 NA non-coding downstream 437504 35201064 ~ 35201384 (+)
G971479 NA non-coding downstream 572559 35336119 ~ 35336343 (+)
G970489 LOC106578645 other upstream 241148 34516457 ~ 34522340 (+)
G970283 NA other upstream 583440 34179703 ~ 34180048 (+)
G970054 LOC106578636 other upstream 592501 34163816 ~ 34170987 (+)
G969752 LOC106578632 other upstream 968427 33794375 ~ 33795061 (+)
G969456 LOC106578609 other upstream 1158678 33604513 ~ 33604810 (+)
G972725 NA other downstream 1486413 36249973 ~ 36250586 (+)
LOC110535658 NA other downstream 2778536 37542062 ~ 37543202 (+)
G973918 NA other downstream 2887578 37651138 ~ 37679368 (+)
lztfl1 LOC106590188 other downstream 3067961 37813177 ~ 37835340 (+)
LOC110535015 LOC106578726 other downstream 3256889 37866715 ~ 38045713 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) trnag-ucc_39 NA non-coding NC_053133.1 CM020930.1 3202707 ~ 3202778 (+)
eurasian perch (Perca fluviatilis) trnar-ccg_3 NA coding NC_053133.1 CM020930.1 18624726 ~ 18624798 (-)
striped catfish (Pangasianodon hypophthalmus) trnar-ccg_2 NA coding NC_047595.1 CM018541.1 32086477 ~ 32086549 (-)
tiger barb (Puntius tetrazona) trnam-cau_88 NA misc NC_056707.1 CM032076.1 5440591 ~ 5440662 (+)
tiger barb (Puntius tetrazona) trnar-ccg_26 NA misc NC_056706.1 CM032075.1 10540219 ~ 10540291 (-)
mexican tetra (Astyanax mexicanus) trnar-ccg_25 NA coding NC_035921.1 CM008324.1 21065169 ~ 21065241 (-)
mexican tetra (Astyanax mexicanus) trnar-ccg_2 NA coding NC_035913.1 CM008316.1 13275511 ~ 13275583 (+)