LOC110535616 (LOC106578707)


Basic Information

Item Value
gene id LOC110535616
gene name LOC106578707
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 34810223 ~ 34978953 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036935347.1
tcatacccaagaagactcatggCTGTAATAGCAGCCAAAGGCTAttgaacaaagtacagagtaaagggtctgaaaacGAATGAGACCTATGTGTGTGGAGCTGGGATGACCCCAATATTCTGAACCGTTTTGCTTTTTTTTGTGGTGGCCCGGGACCTTCTTGGACCGTATGCGCGCATTCACGCATatcttcactcactcactcacgcacgcacgcacgcacgcacacacacacaaacaaaacaccacACATCACATCACGCGTCTGCAAACCAACGAACAGCGCAGACAGGTTTTGCTCTGCGAAAGGCTGTCTTGCAGACTACACTCGAGAAGAGTTACGGAGTGTAGTCTACTTATCCCCTACGATTTTTGGTGtatgaaaaaaataaacattctatAAAGAGGAGCAGTGCAATCAATCGTGGATCTCGGATATGGCAGGTGTGAAGACATTCGACCTTGTTGTTGGAGTTGTTTTAGTTTTTCTGTCTCTTGGAAATGCGTTTCAAGAGCCCGGACAGGACCCGACAAACGGGGACTCCTACTCCTACGTGCAAGGGCAGCCTCTGGCTAAGGAGGACATGGCGGTTGATGTGAAGCTGTACAGTCACCGGTGGAGGAGGTGGCTGTCCCCTGAACAGCCACGTAACAGGGACAGCAACAGGGCCAGCCAGGACCAAGAGCAGGGTCAGGATCAGGGTCAAGACCAACCTGATGGGGGTTTCCCTGGCCTGCTCTCAGCAGAGGACAGCCAGGACACTGACAACAGCTCCCAGATAGAGGAGGACACAGATCACAACTACTACACATCAAAGACTTACGGCCCCACGGACCCCATGAGCAAAGACTTGTGGGTAAACGTTGACCAGATGGACAAGGACAAGGTGAAGATCCATGGCATCCTGTCCAACACTCACAGGCAAGCTGCGAGAGTAAATCTTTCCTTCGATTTTCCCTTCTATGGACATTTCCTGCGTGATCTCACCGTGGCAACTGGTGGGTTCATCTACACAGGGGACGTGGTCCACAGAATGCTGACTGCCACCCAGTACATCGCCCCCCTCATGGCCAACTTTGACCCTAGTGTCTCCAGGAACTCAACCGTCATCTACTTCGACAatgGCACTGCTCTGGTGGTCCAGTGGGATCATGTCCACCTGCAAGACAACTACAACTTGGGTAGCTTCACCTTCCAGGCCACACTGCACAGCGACGGCAGGATTGTCTTCGCCTACAAagagatTCCAATGGAGGTGGCCCAGATCAGCTCCGTCAATCACCCGGTGAAAGTGGGCCTCTCCGATGCCTTTGTGGTGGTCCACAGGATCCAGCAGATACCCAatgtTCGTCGCAGAACGATCTATGAGTACCATCGTGTGGAGCTGACAAAGACCAAAATCACCAACTCTACAGCAGTGGAGATGATGCCTCTACCGACGTGTCTCCAGTTCACCAGCTGTGACAGCTGCATCTCCTCCCAGATCAACTTCAACTGCAGCTGGTGCCACCTCCTTCGCAGGTGTTCCAGTGGGTTTGACCGCCATCGGCAGGACTGGGTTGATAACAGCTGTCCTGATGAGACCAAAGACAAAAGCTGTGATATCATCAGCACCACACAACTCGATCCCTTCATCACCACGTTAGTTGCCAAAACAACAGGCCAGAGCAGAAGCCGAGGAGAGACCACCACAGCCGGAGCCTCCTCGTCCACATCCCGACCCCCAACCAGCGTCCCCACTGAAGatgacacCAAGATTGCTCTGCATCTTAAAGACAATGGAGCGATGCCAAAGGAGAGTGCTGCGGAGAGGAAGGACACACACCCACTGCACACCGGCCTGATCCTGGGCATTCTCGTGGTCTTGCTCATCATGGCAGCCGCAGCCCTGGTCACTGTCTACATCTACCACCACCCTACATCAGCCGCAAGCCTCTTCTTCATCGAGaGACGTCCCAGCAGGTGGCCGGCCATGAAGTTCCGTCGAGGGTCGGGTCACCCGGCCTACGCGGAGGTGGAGCCCGTGGGCCAGGAGAAGGAGGGCTTTATTGAGTCTGAGCAGTGCTAAGGGGCATGCACCGCTCCCCCCCAATGCGACTGATTGACGCTGGTCTCTTGTTTTGTCGATTCAAACGCTCACTGTCAATGTTGTGAAATGAGATGAGAAAATCGTGGTGGTGTCACTTTGAAATCCCCATGCTTTTTTTCTGGTGGTCTGAGAGTAAGGCCTTGTGTTTGATGGACTACCACGGTGAACCTTCAAACCTGGCTTGTTCAACAGAGAGCTGATCTGAGAGCTGCTGAGGGAGGGTCACTGCCAGATGGACTGTGCTGTGGGGAAACCTTAAACTGATCTCAAGTCAGTTCTTCAGTCCAAGCCCAAAGTCTTCGAACACTTCACACTCACAGTGGTGAACGTGACTGACTTCTTGGGGACAGGGTGAACGTAACGGTGTCATTGAGTGGGTTGTACAGTGTGACTGCCCTACACTGGTGGTGTGTGATGTGAGGGGGGAGTAGTAGGAAgaattatacagtatatttttcAGAAAGAATACAGAGTATGTGAACAGAGATCTTGACTTTAAATGTTGGTGAGGCTATATAGGCCTTTATATATCCTTTGAGGTTTTGCTAATTTACTGTTCCATGTTGGGGTTTTTTCTGTTGCTTTTTTAACTTGGGTTTTGTTATTCCTTATCAGTGAGGGGATTTTGTCTTGCTTTCCACTACCATAATAAGGCTTCTTTACCGTAGCTTTTTACTTCATAGCGTGGTTCAATAGTGTGATATGCTCCTGCTACTGCCCCTCATCCCACCCAGGAGTAGCAGGCTTTTGTTGGTATCTCTTTTTTACATAAAGTttgttccattttttttaaacgtttttattttaattttacattGATTTCAGTACTGCCGTGCCATGCTTTCCCTGACTGGAGTTTGCTCAACATTCTTTGCCTGACTGGAGTTTGCTCAACATTCTTTGCACAAAGTTTTTCATGCACATACATCTTTATTTCATTTGGTACAATTGCAAAATTGCGAGACAGGCgcttttgtgagtgtgtgtggttgtgtgtatgcATGGtctaaacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgctcgcatgTTTGTGTGGTTTTTGTGTGATTGGATATCAACCTGCTTGTAGGTGGGTCAGTTTGAGCTGGGTCTGTGTAATTGATGCTGAGTGGTTGACCAGAGGTACTTTTCCATAATTGTATTATAAGTTTGGGACATACCTGGCTTGAGTTTGCCTGGGTTTTGATTTTATGTGTACAATGTGGTTTTCAAGTAGTTTGACCTAGGGGCGTCAATTGGGTATGGCAGTCCCTATACCCTAGCTCAATACTAACAATTTAAAATAGGCTACTAAAATCATTCCAATCCCGATTTACAAGACAAATGCAGTTTAGCAGTATTAGCGGGGTGGCTTTAGGACCAAACATCCATCGGAACTGGATGGTGAACAGCACAACATTTATTTTAAAACAGTGTAGAGGTAGAAGATTGCTGTAGGGTGGCTAAGATGCTAGGTAACTGTCGTTTGACTTGGAATGAAATTAGTTTTTAATCCCACATCTGAGCTAGGGCACCGCAGCTAATTGCTGTATGACGTGTTTGAGGTAAATTTCatttttgctgttctccaaatagcatttcGTACTTTTTAAATTGTGAAGAAATGCATTAAATAAgcttaaaaatgtatgaaaattgCATGGAATCACCCTCTCCTCGTCACTTTACCTTACCCTATGTTTGCCATACCTTAGAGTGGCGGAGAGGTCTCTACAGACCCTAGTTCGAtcccaggctatatcacaaccatTCATgatagggagtcccatagggtggcgaaCAATTtgcccagcgccgtccgggttaggggagggtttgcccgggctaggccgtcattgtaaataagaatttgttcttaacggacttgcctagttaaataaaaaatgtaaaaagctgAAATGATGACCCTGGTTTGACCTGCTACTGAATCAGATCTTGTACAGGACTGGAGAATATGTCTTACTGTTCTATGGAGTGAGAAATCTGCCAAAATGTAAACGAATGTAACATTAGAATCGTAAATCACTTTGGGGAGATTTTTGGCAGATATCTAACCCCATACTGTTCCAGCTCTTGTTCTATATTAATGGCTAGTCCATCTCATTTAACCCTAGCATAGCATAGTGCCTTCACAAAGCATTCAcacgccttgactttttccacattttgttgtgtttcagcctgaatttaaaatgcattaaattgagattttgtgtcactggcctacacacaataccccataatgtcaaagttggAAATATGTCTTTCGAAATGtaattacaaatgaattaaaaatgaaaagctgaaa
>TU1106227
CAGGTGTTCCAGTGGGTTTGACCGCCATCGGCAGGACTGGGTTGATAACAGCTGTCCTGATGAGACCAAAGACAAAAGCTGTGATATCATCAGCACCACACAACTCGATCCCTTCATCACCACGTTAGTTGCCAAAACAACAGGCCAGAGCAGAAGCCGAGGAGAGACCACCACAGCCGGAGCCTCCTCGTCCACATCCCGACCCCCAACCAGCGTCCCCACTGAAGatgacacCAAGATTGCTCTGCATCTTAAAGACAATGGAGCGATGCCAAAGGAGAGTGCTGCGGAGAGGAAGGACACACACCCACTGCACACCGGCCTGATCCTGGGCATTCTCGTGGTCTTGCTCATCATGGCAGCCGCAGCCCTGGTCACTGTCTACATCTACCACCACCCTACATCAGCCGCAAGCCTCTTCTTCATCGAGaGACGTCCCAGCAGGTGGCCGGCCATGAAGTTCCGTCGAGGGTCGGGTCACCCGGCCTACGCGGAGGTGGAGCCCGTGGGCCAGGAGAAGGAGGGCTTTATTGAGTCTGAGCAGTGCTAAGGGGCATGCACCGCTCCCCCCCAATGCGACTGATTGACGCTGGTCTCTTGTTTTGTCGATTCAAACGCTCACTGTCAATGTTGTGAAATGAGATGAGAAAATCGTGGTGGTGTCACTTTGAAATCCCCATGCTTTTTTTCTGGTGGTCTGAGAGTAAGGCCTTGTGTTTGATGGACTACCACGGTGAACCTTCAAACCTGGCTTGTTCAACAGAGAGCTGATCTGAGAGCTGCTGAGGGAGGGTCACTGCCAGATGGACTGTGCTGTGGGGAAACCTTAAACTGATCTCAAGTCAGTTCTTCAGTCCAAGCCCAAAGTCTTCGAACACTTCACACTCACAGTGGTGAACGTGACTGACTTCTTGGGGACAGGGTGAACGTAACGGTGTCATTGAGTGGGTTGTACAGTGTGACTGCCCTACACTGGTGGTGTGTGATGTGAGGGGGGAGTAGTAGGAAgaattatacagtatatttttcAGAAAGAATACAGAGTATGTGAACAGAGATCTTGACTTTAAATGTTGGTGAGGCTATATAGGCCTTTATATATCCTTTGAGGTTTTGCTAATTTACTGTTCCATGTTGGGGTTTTTTCTGTTGCTTTTTTAACTTGGGTTTTGTTATTCCTTATCAGTGAGGGGATTTTGTCTTGCTTTCCACTACCATAATAAGGCTTCTTTACCGTAGCTTTTTACTTCATAGCGTGGTTCAATAGTGTGATATGCTCCTGCTACTGCCCCTCATCCCACCCAGGAGTAGCAGGCTTTTGTTGGTATCTCTTTTTTACATAAAGTttgttccattttttttaaacgtttttattttaattttacattGATTTCAGTACTGCCGTGCCATGCTTTCCCTGACTGGAGTTTGCTCAACATTCTTTGCCTGACTGGAGTTTGCTCAACATTCTTTGCACAAAGTTTTTCATGCACATACATCTTTATTTCATTTGGTACAATTGCAAAATTGCGAGACAGGCgcttttgtgagtgtgtgtggttgtgtgtatgcATGGtctaaacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgctcgcatgTTTGTGTGGTTTTTGTGTGATTGGATATCAACCTGCTTGTAGGTGGGTCAGTTTGAGCTGGGTCTGTGTAATTGATGCTGAGTGGTTGACCAGAGGTACTTTTCCATAATTGTATTATAAGTTTGGGACATACCTGGCTTGAGTTTGCCTGGGTTTTGATTTTATGTGTACAATGTGGTTTTCAAGTAGTTTGACCTAGGGGCGTCAATTGGGTATGGCAGTCCCTATACCCTAGCTCAATACTAACAATTTAAAATAGGCTACTAAAATCATTCCAATCCCGATTTACAAGACAAATGCAGTTTAGCAGTATTAGCGGGGTGGCTTTAGGACCAAACATCCATCGGAACTGGATGGTGAACAGCACAACATTTATTTTAAAACAGTGTAGAGGTAGAAGATTGCTGTAGGGTGGCTAAGATGCTAGGTAACTGTCGTTTGACTTGGAATGAAATTAGTTTTTAATCCCACATCTGAGCTAGGGCACCGCAGCTAATTGCTGTATGACGTGTTTGAGGTAAATTTCatttttgctgttctccaaatagcatttcGTACTTTTTAAATTGTGAAGAAATGCATTAAATAAgcttaaaaatgtatgaaaattgCATGGAATCACCCTCTCCTCGTCACTTTACCTTACCCTATGTTTGCCATACCTTAGAGTGGCGGAGAGGTCTCTACAGACCCTAGTTCGAtcccaggctatatcacaaccatTCATgatagggagtcccatagggtggcgaaCAATTtgcccagcgccgtccgggttaggggagggtttgcccgggctaggccgtcattgtaaataagaatttgttcttaacggacttgcctagttaaataaaaaatgtaaaaagctgAAATGATGACCCTGGTTTGACCTGCTACTGAATCAGATCTTGTACAGGACTGGAGAATATGTCTTACTGTTCTATGGAGTGAGAAATCTGCCAAAATGTAAACGAATGTAACATTAGAATCGTAAATCACTTTGGGGAGATTTTTGGCAGATATCTAACCCCATACTGTTCCAGCTCTTGTTCTATATTAATGGCTAGTCCATCTCATTTAACCCTAGCATAGCATAGTGCCTTCACAAAGCATTCAcacgccttgactttttccacattttgttgtgtttcagcctgaatttaaaatgcattaaattgagattttgtgtcactggcctacacacaataccc

Function

NR:

description
plexin domain-containing protein 2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036935347.1 False 4478 mRNA 0.47 15 34810223 34978953
TU1106227 True 2889 TUCP 0.45 5 34810293 34842512

Neighbor

gene id symbol gene type direction distance location
LOC110536615 NA coding downstream 275101 34533287 ~ 34535122 (-)
LOC110535610 LOC106578645 coding downstream 287792 34516455 ~ 34522431 (-)
LOC110535609 LOC106578643 coding downstream 311096 34491045 ~ 34499127 (-)
LOC110535608 LOC106578644 coding downstream 360009 34444520 ~ 34450214 (-)
LOC110535602 LOC106578636 coding downstream 639138 34163743 ~ 34171085 (-)
LOC110535617 LOC106578706 coding upstream 246812 35225765 ~ 35355426 (-)
LOC110535008 LOC106578723 coding upstream 438522 35417475 ~ 35428560 (-)
LOC110535009 LOC106578704 coding upstream 465146 35444099 ~ 35492990 (-)
enosf1 enosf1 coding upstream 549172 35528125 ~ 35533382 (-)
LOC110535621 LOC106578703 coding upstream 555174 35534127 ~ 35584736 (-)
G971122 NA non-coding downstream 30291 34779672 ~ 34779932 (-)
G970963 NA non-coding downstream 40316 34769513 ~ 34769907 (-)
G970948 NA non-coding downstream 66649 34743152 ~ 34743574 (-)
G970947 NA non-coding downstream 78918 34730321 ~ 34731305 (-)
G970927 NA non-coding downstream 97215 34710602 ~ 34713008 (-)
G971249 NA non-coding upstream 19190 34998143 ~ 34998353 (-)
G971655 NA non-coding upstream 249682 35228635 ~ 35229332 (-)
G971683 NA non-coding upstream 292258 35271211 ~ 35286036 (-)
G971736 NA non-coding upstream 371188 35350141 ~ 35350399 (-)
G970066 NA other downstream 934951 33874814 ~ 33875272 (-)
G968868 NA other downstream 2142733 32666752 ~ 32667490 (-)
LOC110535581 LOC106578582 other downstream 2260637 32489195 ~ 32549643 (-)
G967535 NA other downstream 2757030 32050960 ~ 32053193 (-)
G966663 LOC100194703 other downstream 3418879 31391036 ~ 31391344 (-)
G972383 LOC106578698 other upstream 893716 35872669 ~ 35873258 (-)
G974622 LOC106578671 other upstream 2234931 37213884 ~ 37214896 (-)
G974756 NA other upstream 2435425 37414378 ~ 37415635 (-)
LOC110535661 LOC106578659 other upstream 2760922 37735411 ~ 37809752 (-)
G975103 LOC106578726 other upstream 3062453 38041406 ~ 38045662 (-)
G971193 NA non-coding upstream 72013 34914525 ~ 34916416 (-)

Expression


Co-expression Network