LOC110535008 (LOC106578723)


Basic Information

Item Value
gene id LOC110535008
gene name LOC106578723
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 35417475 ~ 35428560 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036936615.1
ttcctccctccttccctttttcTTCTCTTCATGTCTCCCCTACACTCATttctgtctggtctggaagggGATACATCATCTCTACATCTGCTTTATGGCTTTTGGTTGCAGTCCAACACTGTTGTGCCACACTGCTGGCAGAGTGTTGCAGAGGACCACTAGATGGGGATGTGTAGTCATGGCAGAATAAACATGCAACTCACAGGACAGCCAAATGAAAAGAGTGTGCTCTCTCCACTGCTCCTTTAAATAACATGGGACTGCAAGTGTTTGGCGTGGTCCTTGACGATTCTGCTCCATAGGTATATTTTCTCTAGGTTTCACATCTCTTCCCAGGAGTCACACTCTTTCTGAAATATAGTACCCTtgaagggccagagagagagagagacaaattgtTTGCAACAGTCATATATAAAGAGGTTAGCGGGGCAGTCACATCACACCGTCATGACTGCGGCGATAAAGGTACACAATGCCTAGTGCAGTGTAAGCAAACGGCAGAACAGCGAGCGGGAGCTGTGGCGTGTGGAAAATGCTAGTGGACACGGACAATGCAACAGGCTCAGGCCTGACTAGCCCTCAGAGGGACAGGGGTCGCCTCACTGCGGACAAcagccccctctctccctccctccctctgaggGCTAGCCAGCGCAGGGGCTGCCACAGCATGGCCTCGGGGAGGACGCTGAAGTTCGCCCTGTGCGAGGTTCTGCAGTTTGTAGGCCTGTGCGTGCCGCTCTTCATCGTCATGCAAAGGTTCGCCCTCATCGTGGCGCGGGTCAAGAGCATGGCGCAGCCGCCTGGCGACGCCAGCACCGCCTACTGGCTCATCGTGGCCTCCTCTATCGCCTATGTCACCTCCACAGCCCTGCTGGTCTGGGTGCCCATGAAGTACATGGTGTTCACAAATAAGAAGTTTCTTGTCGGCAGGAAGAAGTGgaggccAGTGGCACTGGTCTATGTGATCCTCTCCACATTACCCTGCTTTGCCTTTCTCATCGCCAGCTCAGAGGTGCAGATCAATAACAGTATAAGGCAGGACACGTTCGCAGAGCTCCCCGTGTCGCTGATGCTCTTCTCCCTCATCTGCATCGATATCCTGGAGAGGATCCGCCACTGTCGACTCACTGGACATGCTAATGAATTGGACCGAGATGCTGAGATCCCTTCCAATGTCCTCACACACGTGGAGCACCTACGTGGAACCCCAGTGACACCAGTAAACCCAGCAAACCCTGCGTCACCCGTAACGCCAGCTGTGCCCGGGCAACCTGCACAACCAGGGCAACCTGGTGGTCCAAATGGGCAGGACCAGAACGGGGCGGGCTCACGACCAGAGGCCAATGGGACTTTCCAGGGGATGTCAGGTAACCAGATACCAGGGAGACAGTTTAGCATTTCAGGCCTGAGCTCACGCTCGGCACGCTCAGCACGTTCGGCACGCTCTGCACACTCTGTCAGCACGTCGGTGGACCGTGGAGTCTCACCAAATGCGTACACAGGGCCGCTGCACTTCCTGTGTGCCAGCGATGCCCGAGCCGAGGTATTTGTGGACAGCTTTCTGTTCTGGATGGACACAGTGGAGATGGTGAGGGTGGCTGGGCACCCAGCGGTCTACTACTCGGGCTGGGTGTTCCCTATCTACATCTTTAGCTACCTGTCGTGCCTGCGGCTGGTTGTCATGCCCCACAGTCCCCTGCTATCATCACTAGGCGTGGCCCTGCAGGATTTGCCCTTCCTGTTTGTGCGTATCGGCCTCATCGCCTTCTTCGGCTTTGtcactcccctcctctacctGATGAAGAACCTGCTCGTCTGCCTGGCCTTCATCTACTTCAACTTTATGACCAAGCTGAGGGTCTTCAACACCGAGAGGATGTTCTGATCTGAGTCGCCAGCCAAGGATGAGAAAAAAACAATGGACAACAACCCACTGGGTTTCCACAAAActggtttccacatcatttcaatccCCCCCAAAACTGTAAGggaatttatttatttgtttttacatttttttttttttaacctaaatccaatgtcaTGGTGATATTTTTTGTTCATTTCACATTGTATtcacaactcaaccaaatgtaaatcaaaactagacgttgaaattacgtctgtgcccagtggaaaTGGAGTTCATAACAGAGACACCAAACCAAAACAACAACTGACTCACGCAGCGATGAGAAGAGATGGAGCGGATTCCTGTGTTCGGCACAGCAAAGAGAGATTGATCCATTTCATAATGATGATTCTGATTAAAGGAGGGACAGGATGACAATTGTGGAGCTTTTTGCAGGCTAAAAGGGAACTCTTTGGCAATGTGTTCCCGTAAAGGGGATGGAGGACATTGACTGTCAGAGGACTATGTGTTGTCTTGGTGTTATCTTATTTCCTATTTGTTCAACGTTGTTTTTTACCCCGCAACTCTCCTTGCCCCCTTGTCCCCAACCTgaaccatggcactttgagaatGTAAAGAACCTGTCATGTCACTTACAGATTTGATAACAGATAATATATGATGTTTCTATTCTATTACCATAAAGTGCAGTGAATTGTGTAAGAATATACATCCATGTTGTTATACATCCCAGATTTTCTTCCCTTGCTAGGTTATCATATCCACACATTTAAAACAAAGCGTGAGTTTGTACAAATGAAACATATTTTTGGGTGTAAAAATGTATAAAGACAAATAGAAAAtcggagagaaaaaaaatacatctgtTTTATGATATGATTTCACGTGAGCATGAACTGTGTATGACTGCATTTATATGCGTGTGTTACCGGCCTCAGTCTGTAGGTGGCCTGtaatagtaaaaagaacggacacaCGTTTACGTTTGCCAAGATCTGTCGCTTTCTATATTATGACGATTTTTTTTGTCTTCTACAATTGTCTTTTTTCTTGTACGTACACTACCGgccaaaagttttagaacacctact
>TU1107077
CAGCAACACACGCTTGCTCACAGCAACACACGCTTGCTCACAGCGCTGTGGTGCATAGCGAAGTGTCCAGGGAGTGGCTACTTTATAAACAGCTATAGGGTAGAATAATCCACATACCCGGCCGTCATGGCGATGTTGTAAAATGTAAGCCATGCGACAGCGATTGCACTTTTCGTTctcttcttgttgttgttatcCTTCTCCTCAACCGAGCCGTCCTCCTCCATGGACGCCATGGTACCGGGGACAGAGTGGGGAAAGTCAGAAACGGTGCACGAGCGCAGCTGacagctgggactgggagcagcAGGGTCATCCGTCAATGTACCCACGGCAGCCCTCTCGCGGGACTATTCCTGCAACAAgcgttctattcctccctccttccctt

Function

NR:

description
very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036936615.1 False 2970 mRNA 0.49 4 35417475 35424644
TU1107077 True 391 lncRNA 0.54 2 35424627 35428560

Neighbor

gene id symbol gene type direction distance location
LOC110535617 LOC106578706 coding downstream 62049 35225765 ~ 35355426 (-)
LOC110535616 LOC106578707 coding downstream 438522 34810223 ~ 34978953 (-)
LOC110536615 NA coding downstream 882353 34533287 ~ 34535122 (-)
LOC110535610 LOC106578645 coding downstream 895044 34516455 ~ 34522431 (-)
LOC110535609 LOC106578643 coding downstream 918348 34491045 ~ 34499127 (-)
LOC110535009 LOC106578704 coding upstream 19455 35444099 ~ 35492990 (-)
enosf1 enosf1 coding upstream 103481 35528125 ~ 35533382 (-)
LOC110535621 LOC106578703 coding upstream 109483 35534127 ~ 35584736 (-)
LOC110535624 LOC106578699 coding upstream 469487 35894131 ~ 35932284 (-)
LOC110535626 LOC106578695 coding upstream 532634 35957278 ~ 36001125 (-)
G971736 NA non-coding downstream 67076 35350141 ~ 35350399 (-)
G971683 NA non-coding downstream 131439 35271211 ~ 35286036 (-)
G971655 NA non-coding downstream 188143 35228635 ~ 35229332 (-)
G971249 NA non-coding downstream 419122 34998143 ~ 34998353 (-)
G971193 NA non-coding downstream 501059 34914525 ~ 34916416 (-)
G971896 NA non-coding upstream 17232 35441876 ~ 35443460 (-)
G972007 NA non-coding upstream 182294 35606938 ~ 35621950 (-)
G972023 NA non-coding upstream 203223 35627867 ~ 35628095 (-)
G972029 NA non-coding upstream 212796 35637440 ~ 35638192 (-)
G972067 NA non-coding upstream 250036 35674680 ~ 35674952 (-)
G971137 NA other downstream 578549 34836972 ~ 34838926 (-)
G970066 NA other downstream 1542203 33874814 ~ 33875272 (-)
G968868 NA other downstream 2749985 32666752 ~ 32667490 (-)
LOC110535581 LOC106578582 other downstream 2867889 32489195 ~ 32549643 (-)
G972383 LOC106578698 other upstream 448025 35872669 ~ 35873258 (-)
G974622 LOC106578671 other upstream 1789240 37213884 ~ 37214896 (-)
G974756 NA other upstream 1989734 37414378 ~ 37415635 (-)
LOC110535661 LOC106578659 other upstream 2315231 37735411 ~ 37809752 (-)
G975103 LOC106578726 other upstream 2616762 38041406 ~ 38045662 (-)

Expression


Co-expression Network