LOC110535009 (LOC106578704)


Basic Information

Item Value
gene id LOC110535009
gene name LOC106578704
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 35444099 ~ 35492990 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036935355.1
AGCGAGGAGTGTGTGGGGTGTGCAGAACGGAGCTGCAGACGCGGGACATCCTTCGGCTCTAAAATGTTTGTGAGTTTGTGATTGTGGTCAGCGCTGCACACTGGAAAGAGCCATATTTAATATAACCTAACACAAGCCACGGGTGCATTTTCCAGCGCAACACAAAATATTACGAATACGGGGAAATTTAACTTTCTCTATCCAGATTGTATCCAACAGTGTGGGCAATTAACGGAACAATGGGATTCTAACGGGATGTTCGAGATTAACATTTTACGGTCGTGCGCAGTCCTCAAATTCTGAATTTGGATGATCGGAACTTTTTCGTGCGAGCGTTTAGTTTGCTGTTCTCCCAGCAACTGATTCAAACCTGCTCGTTTGGACTGAATTTTGAGATGAACAAAAAGTGACATAGCGACTCTCATCTCTTCTGCACTCCTAACAGATTTATACAACGCCATGAAAGACGATTTTGCCGACGAGGAGGAAGTACAGTCTTTTGGATACAAGCGGTTCGGTATCCAGGAGGGTACCCAGTGTACTAAGTGTAAGAATGAGTGGGCACTGAAGACCTCCATAGCACTGCTCTACGTGCTGTGCACTCTACTCACCATTGCTGTTGCTGTCCTCGGGTATAAAGTGGTGCAAAAGGTTGACAATGTTTCCGAAGGTATCGAGAGCTATGGGGGGAAGATCATTGCTGTGGAAACAGACTTGAAAAAACTAGATGACCAGACTGGCGAGAAGTCGGAGAACACCACCACAGAAATCCAGGCCTTTAAGAACAACATCTTGGCTCTGCAGAGGCAGCTGTCTGAGGTGGCTGAAAGGAGCAGTAGTAACCGGGCAGCCCTAGGTCGTCTGCAGGATGCTGGCCAGGACATGCAAGGCAGCCAGGGCTCCATCCAGGGTCTGCTGGATGCCAACACAGCCATGCTGAGGTCCGTCAACGGCACCTTGCGGGCCTACGGCGGCACCATGGAGGGTCTTCAGGACGACACGGCTCGGCTGCAGACGGAGCTTCAGGAGCAGGTTCGGCAGCAGGGCCAGGCCCTGTTCAGCATCGGGAATCTCAACCTCACCCAGGCCCAACAAAGGGGCCTGATCTTGGCTTTGCAGAGGTCAGTGGACGACACCAGCCAGGCAATCCAGAAGATCCGCAATGACTTCCAGAGCATAGAGCAGACAGCCAGGCAGACTAAGTCGGACGCTGATTGGCTGCGGGAGAAGGTGCAGAACCTCCAGGTGCTGGCCTCCAACGCCTCTGTCCTGGCCAAGGCCAACAACGACATTCTGGAGGACGTGGGTTCTCAGCTGGCCTCGCTGTCCGGACAGCTGCAGAACACCTCCAGCCTGGCGGAGAACCACGACCAGACCCTCAGGGAGATCATGGACCAGCAGAGGGACCATGACAACCTCACCTCCTCCAAGTTCGACCAGCTGGAGATACGCCTGGACGAGTCGGAGGGGAGCATCGACCGTGTCACGGGCAACATCAGCTTTACAACCCAACTCCTGGGCGCCATCAATCTCAACCTCAACGAGCTGCGCACCTGCGCTGAAACGGTAGGACGCCACTCCGACTACCTGGCTGACCTGAACTCCACGGTTTTGGAAGTGAGGTTGGACACCACCACACTAAGGTTGCAGCAGGACGACCTGGCGGCCCGCCTCGACAAAGAGGTCACCAGCCTCTCCATAGTCATGGAGGAGATGAAACTGGTGGACAGCAAGCACTCACAGCTAATCACCAACTTCACCATTCTCCAGGGTCCACCTGGTCCCAGAGGCCCGCGGGGAGACAAAGGACCCCAGGGAGTGGCAGGTCAGGCCGGTCAGAAGGGAGAAAAAGGGGATAAAGGTGGGCCTGGGGTGCAGGGGCTCCGTGGAGAGAAGGGATCTCCAGGACCACTGGGACTAACAGGTTCCAGAGGTCAACAAGGCTCACGGGGCAACCCAGGTTCAAAGGGCTCCCGAGGGTCAGGCGGCAGGGCAGGACCTCCGGGTGCGAAGGGTGAGCCAGGAACGGCTGGGCTCCTTGGGAGAGATGGACAGCCCGGTCCTCAGGGGCCCCAGGGCCCGCCGGGAGACCTAGGACAGGTGGGGCCGGCTGGGGTACAGGGACCCAGGGGAGTGATGGGGCCTGTGGGGGCCCCAGGGCCACCTGGACTACCAGGACATCCTGCCCGAcctgcagcagtagcagcagtgccTTTGGCCTCTGCCTCTCTGAAGAGTGACTCCCCCACCCCTACAGTGTTGTCCCCAGGTTGTCCTCATGAGTGGGTTGGCTTCAGAGACAAATGCTACCACTTCTCCAGGGAGCTGCACAACTTTGACGATGCAAAGAAAAGCTGTGATGCCCAGACTGCGTCAATGGTGATCATTAACGATATAGCTGAACAGAAATGGCTGCAGAAGCAGACCTCTGGAAAGGGCTATTTCTGGATGGGTCTGACAGATAGGGAGAAGGAGAATGTTTGGCACTGGCTGGATGGAACCGAACCTGCCTTCACGAAGTGGAAGCCGGGCCAGCCAGACAACTGGAGCCACGggcatgagagaggagaggactgcgCAGGCCTCATCCACGAGGGACTGTGGAATGATTTCTTCTGTGAAGATCTCATCAGCTACATCTGTGAGAAAGCCATGGAGAGCTCAAAAACTCCAGGGTTATAGCACCCTCTggggaagaagaaaaagaagcacAGTTGAGTCAGAGGCGGTGTGGTGAGCAGCATTATGTTCCACCCACAAGTGTAACTAGCCCTCTGACACACTTTTGCATGGATATGCTGTATGGAGAGAGACGAGGGACAAACTGCACATGCCTGAATCGGGAATAAGGCTGCATTCACTGAGCTTTCCCCCTCTAGTGGCCAGATTCAGCTATCCTCCAAAGTGATTCCAGACCATTACTTCCAGCATTTGCATTCCAACAACATGACAATCAAGAGTTGAGAAGGATCcatattgttttttaaaataatgACCCAAGTAATTGACTCATAGATTGGTCTCATTGTTTTTAATGCTGTTTTTTTTGTACGACTTTAGTCCATTTATATCCGATTATCTGAATGTATATTTTCATATTGCAGTTCTTCTCAATGTAGATCATTATTTCAGCAGTGCCAATGGGAATCACCACAGTGCCCTTTTCACGGTTTAAAGTCTAGTTCCACAATGATGTAAGGTGCAAAATGATGCGCAAAAAAAAAGCTAAGAAATGTCGCTGATATGCTATCCTTGAGGAACACCCGTCCTTTCTCAAACCTCAAGAACTGtctagctatatatatatatataaaactatgTTATTATACACATGCATTTGAATAAATGATGTATTTACACACAACAGTCAGAAGGTCTGCTTGGTTGTAAGTCAAGATTGCACAAGTGTACATGTTAGTGTTTCTTGACGGTACTGTATTTTGGCTTATGGTGCCTGTATTGTTGTATGAGTGTGAACTTTCCACAAAGTAGCAATAGTCTGTGGTCACGTTCCAGGCTGACTACATTGCAAACGTTGCAttacatcaaccaatggttgcgagcgacgcccccccccccctctcccccccctatGTGCAGCAGCAGCACACATAGAAATAGGAAGAATAGAACGGGCTTGGAACCtttaaccctggcaatttgactgatGAACTCACAGGTAAACgcgcaatggctgcctggtattgtgatgcaataattGTCATGGTAATTTATAATGTTTATTCAAATGatgttaactgatg

Function

NR:

description
collectin-12-like

GO: NA

KEGG:

id description
K10062 COLEC12; collectin sub-family member 12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036935355.1 True 3764 mRNA 0.51 10 35444099 35492990

Neighbor

gene id symbol gene type direction distance location
LOC110535008 LOC106578723 coding downstream 19455 35417475 ~ 35428560 (-)
LOC110535617 LOC106578706 coding downstream 88673 35225765 ~ 35355426 (-)
LOC110535616 LOC106578707 coding downstream 465146 34810223 ~ 34978953 (-)
LOC110536615 NA coding downstream 908977 34533287 ~ 34535122 (-)
LOC110535610 LOC106578645 coding downstream 921668 34516455 ~ 34522431 (-)
enosf1 enosf1 coding upstream 35135 35528125 ~ 35533382 (-)
LOC110535621 LOC106578703 coding upstream 41137 35534127 ~ 35584736 (-)
LOC110535624 LOC106578699 coding upstream 401141 35894131 ~ 35932284 (-)
LOC110535626 LOC106578695 coding upstream 464288 35957278 ~ 36001125 (-)
LOC110535627 LOC106578693 coding upstream 526519 36019509 ~ 36022555 (-)
G971896 NA non-coding downstream 639 35441876 ~ 35443460 (-)
G971736 NA non-coding downstream 93700 35350141 ~ 35350399 (-)
G971683 NA non-coding downstream 158063 35271211 ~ 35286036 (-)
G971655 NA non-coding downstream 214767 35228635 ~ 35229332 (-)
G972007 NA non-coding upstream 113948 35606938 ~ 35621950 (-)
G972023 NA non-coding upstream 134877 35627867 ~ 35628095 (-)
G972029 NA non-coding upstream 144450 35637440 ~ 35638192 (-)
G972067 NA non-coding upstream 181690 35674680 ~ 35674952 (-)
G972077 NA non-coding upstream 186702 35679692 ~ 35680086 (-)
G971137 NA other downstream 605173 34836972 ~ 34838926 (-)
G970066 NA other downstream 1568827 33874814 ~ 33875272 (-)
G968868 NA other downstream 2776609 32666752 ~ 32667490 (-)
LOC110535581 LOC106578582 other downstream 2894513 32489195 ~ 32549643 (-)
G972383 LOC106578698 other upstream 379679 35872669 ~ 35873258 (-)
G974622 LOC106578671 other upstream 1720894 37213884 ~ 37214896 (-)
G974756 NA other upstream 1921388 37414378 ~ 37415635 (-)
LOC110535661 LOC106578659 other upstream 2246885 37735411 ~ 37809752 (-)
G975103 LOC106578726 other upstream 2548416 38041406 ~ 38045662 (-)

Expression


Co-expression Network