XLOC_028379 (mapre3b)


Basic Information

Item Value
gene id XLOC_028379
gene name mapre3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 783644 ~ 797858 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055119
GATTACGAGAGAGACTGCGCACTGATCCACACCGCAGAGACACGGGACAGATTTACCACAACCGACACTGATCTGGAGTAGATACCCAGAGGAGAGCAAGAGCACTACAGACACGTCCACCTACTgacgTTGTGGGATGGCGGTAAACGTTTACTCCACATCGATGACCATCGAGAACCTGAGCAGACATGATATGCTGGCCTGGGTGAACGACTCTCTGCAGCTCACCTACACCAAGATCGAGCAGCTGTGCTCAGGTGTGGCCTACTGTCAGTTCATGGACATGCTGTTTCCCGGCTGTATTCTGCTCAAGAAGGTGAAGTTTCAGGCCAAGCTGGAGCACGAGTACATCCACAACTTCAAAGTGCTGCAGGCGGCCTTCAAGAGGATGAACGTGGACAAGATCATTCCAGTGGAGAAGCTGGTCAAAGGGAAGTTTCAGGACAACTTTGAGTTCGTTCAGTGGTTTAAGAAGTTTTTTGACGCCAATTACGACGGGAAGGAGTACGACCCTCAGTTAGCGCGGCAGGGTCAGGACGTCACACCTCCACCAAACCCAGGACCCCAGCGGACGTCACCGACAGCACCAAAAACAATGCCCACCCCCCAGCGTGCCATAAGCTCCACCCCCTCAACTGGAATACGACGAAACACACCAATATCACGAAATGGAGGCGACGCCGAGATCATGGAGCTCAACCAACAGCTGATGGATCTGAAATTGACGGTGGACGGTTTGGAGAAAGAGCGAGACTTTTACTTCAGCAAACTCAGAGACATTGAGCTGATCTGCCAAGAGCACGAGAGCGACAGTAACCCCGTCCTGGGAAAAATCATCGACATCCTCTACGCCACAGAGgATGGTTTTGCGCCTCCAGAGGACGAAGAGATTGACGAACAGCCACAAGACCAGGAAGAATACTGATCCTCCTTTTCCTCCTCACTTCAccccaatctctctctctctttctctctttcgttcTTCATCTTTTCTGCCTGCTCTTCCTCCATTTCATctcttctttttctctttttcaccACCCGCAGACTCGAGGGGCGTGGTTTAACAGGCTAATAGATAGAATAGGGGGCATGTCTATGCTAATAAGGTTTGAATTCATGCAGTGAAGCCGACGTTTGATTGGCTTTGGTTGTGTTTTTAAGACAGCACTGAACTCATGATGATGCAGtgtcactttcacacacacacacacacacacacacacacacactgatgtagCCGAGGTTATTATtgactgactgtttttttttattatttgggcTCCAATTAGCTAATTTATTACACTTCATGCTTATGTCACTTTTATTTGCGTATCACGTTCTCCCTCAACTTTTGAAGGGTTTTAGTAGCAGTGGATTAAGCAGATTGtgtattattataactattggAAGTTTTATTGTGCCGCAGATATAAAAAAAGCGAGTTTAAATCTTGCAATTCAGACTTTTTTCTTGCAATAATGACTTTTGGTTACACTTTAATTTAAGGCGTCTTTGTTGAAGTGTAAATATTCATTTAAGtactgagtaatattaattatgtgtacTTACTATATGGTTAGATTATGGTCTAGGGTTAGTTGAATGTAATTACTACAGCAAATACCATGAatgtgtaacaaggacaccttaaataAAGTCTAACCAgactttttttctcagaattttgAGATATAAACTTGACAAGAagtaaaattttactttttttactctGTTAATTCTGGTAAAACCCTAAAATGTTATGCAAATGTTTTTTAACAATGAAATATATCTCAATTTCTACTTTTTTCTTGAACGTAAATGCAGCATAAACATTATTTCATAATTAgcacttatttttaataatgcaattatataatcattattttatttcttgcaaTTTTGGGttaaaagtctgaattgtgaaATGAAAAATTTGCTATTacctttttaattattattattatttttattatttaatatatttccctaaaaatctgaattgtgaaGTGTAAACTTACATTTTAGGAAGAGAAACGCGAGATGTAAGCAGCTCTGGAAGAAATTAATAATGTCAAGATGCAAACTTACAATTATGACCTTATAACTTGAAATTGGGAGATGAAAAATAGGCTGGAAAAGTTTTATTTACCTCCTTTTACATTGATTAATCGGCAGAAATGAGCGTCCATTAGAAGCTTCACTAATGAATTCAATAATGAGTTCAGTTTGCTTCTCCATTCACAAtcagagcaaacacacacacacacactctccatcACGTGAACTCTGAGTCTGTGTGTTTTGCTGATGAGTCATTATTAATAGTGCAGGTgtgagagttttatttatttataaagaagGAAAAAGAGCAACTAACACTGAATGCAAAGAGAAAAAACAGACTTGGCCATTAGTAATGGTGACTCGACTGATGATATGAAACCGGTTTTCTAGCTGctatgttttatttaacatttcattcTCTGGTATATTTTGATTTGATTGCACAGAGCTGTGTGTTGAGCTCTTCACTGTCTCGGCGGCTGTGCGAACGTTCGCAAACATGCATCCATTTGGAGTTTtactatgtaaaataaaaatgtgtgcgGGGAATGA
>TCONS_00055120
ATGGCGGTAAACGTTTACTCCACATCGATGACCATCGAGAACCTGAGCAGACATGATATGCTGGCCTGGGTGAACGACTCTCTGCAGCTCACCTACACCAAGATCGAGCAGCTGTGCTCAGGTGTGGCCTACTGTCAGTTCATGGACATGCTGTTTCCCGGCTGTATTCTGCTCAAGAAGGTGAAGTTTCAGGCCAAGCTGGAGCACGAGTACATCCACAACTTCAAAGTGCTGCAGGCGGCCTTCAAGAGGATGAACGTGGACAAGATCATTCCAGTGGAGAAGCTGGTCAAAGGGAAGTTTCAGGACAACTTTGAGTTCGTTCAGTGGTTTAAGAAGTTTTTTGACGCCAATTACGACGGGAAGGAGTACGACCCTCAGTTAGCGCGGCAGGGTCAGGACGTCACACCTCCACCAAACCCAGGACCCCAGCGGACGTCACCGACAGCACCAAAAACAATGCCCACCCCCCAGCGTGCCATAAGCTCCACCCCCTCAACTGGAATACGACGAAACACACCAATATCACGAAATGGAGGCGACGCCGAGATCATGGAGCTCAACCAACAGCTGATGGATCTGAAATTGACGGTGGACGGTTTGGAGAAAGAGCGAGACTTTTACTTCAGCAAACTCAGAGACATTGAGCTGATCTGCCAAGAGCACGAGAGCGACAGTAACCCCGTCCTGGGAAAAATCATCGACATCCTCTACGCCACAGAGgATGGTTTTGCGCCTCCAGAGGACGAAGAGATTGACGAACAGCCACAAGACCAGGAAGAATACTGATCCTCCTTTTCCTCCTCACTTCAccccaatctctct
>TCONS_00055121
CACACCGCAGAGACACGGGACAGATTTACCACAACCTTGTGGGATGGCGGTAAACGTTTACTCCACATCGATGACCATCGAGAACCTGAGCAGACATGATATGCTGGCCTGGGTGAACGACTCTCTGCAGCTCACCTACACCAAGATCGAGCAGCTGTGCTCAGGTGTGGCCTACTGTCAGTTCATGGACATGCTGTTTCCCGGCTGTATTCTGCTCAAGAAGGTGAAGTTTCAGGCCAAGCTGGAGCACGAGTACATCCACAACTTCAAAGTGCTGCAGGCGGCCTTCAAGAGGATGAACGTGGACAAGATCATTCCAGTGGAGAAGCTGGTCAAAGGGAAGTTTCAGGACAACTTTGAGTTCGTTCAGTGGTTTAAGAAGTTTTTTGACGCCAATTACGACGGGAAGGAGTACGACCCTCAGTTAGCGCGGCAGGGTCAGGACGTCACACCTCCACCAAACCCAGGACCCCAGCGGACGTCACCGACAGCACCAAAAACAATGCCCACCCCCCAGCGTGCCATAAGCTCCACCCCCTCA

Function

symbol description
mapre3b Predicted to enable microtubule plus-end binding activity. Predicted to be involved in protein localization to microtubule plus-end; regulation of microtubule polymerization or depolymerization; and spindle assembly. Predicted to act upstream of or within cell division. Predicted to be located in cytoplasm and microtubule. Predicted to be active in microtubule cytoskeleton. Orthologous to human MAPRE3 (microtubule associated protein RP/EB family member 3).

GO:

id name namespace
GO:0051225 spindle assembly biological_process
GO:1904825 protein localization to microtubule plus-end biological_process
GO:0035372 protein localization to microtubule biological_process
GO:0031110 regulation of microtubule polymerization or depolymerization biological_process
GO:0005815 microtubule organizing center cellular_component
GO:0051233 spindle midzone cellular_component
GO:0005874 microtubule cellular_component
GO:0005881 cytoplasmic microtubule cellular_component
GO:0035371 microtubule plus-end cellular_component
GO:0051010 microtubule plus-end binding molecular_function
GO:0008017 microtubule binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040704-6 Predicted to enable microtubule plus-end binding activity. Predicted to be involved in protein localization to microtubule plus-end; regulation of microtubule polymerization or depolymerization; and spindle assembly. Predicted to act upstream of or within cell division. Predicted to be located in cytoplasm and microtubule. Predicted to be active in microtubule cytoskeleton. Orthologous to human MAPRE3 (microtubule associated protein RP/EB family member 3).

Ensembl:

ensembl_id ENSDARG00000102878

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055119 False 2619 mRNA 0.40 8 783644 797858
TCONS_00055120 False 825 mRNA 0.52 6 785302 789645
TCONS_00055121 True 541 mRNA 0.54 5 787066 797831

Neighbor

gene id symbol gene type direction distance location
XLOC_028378 tmem214 coding downstream 3848 764100 ~ 779796 (-)
XLOC_028377 agbl5 coding downstream 23084 737539 ~ 760560 (-)
XLOC_028375 CU855889.2 coding downstream 49297 701612 ~ 734347 (-)
XLOC_028376 NA coding downstream 51160 723830 ~ 732484 (-)
XLOC_028374 rtcb coding downstream 98211 676710 ~ 685433 (-)
XLOC_028380 dpysl5b coding upstream 838 798696 ~ 815871 (-)
XLOC_028381 sobpb coding upstream 21070 818928 ~ 858434 (-)
XLOC_028382 crybg1b coding upstream 63586 861444 ~ 890220 (-)
XLOC_028383 NA coding upstream 102104 899962 ~ 904022 (-)
XLOC_028384 mrap2b coding upstream 107625 905483 ~ 908821 (-)
XLOC_028373 NA non-coding downstream 386825 393551 ~ 396819 (-)
XLOC_028362 NA non-coding downstream 664450 116322 ~ 119194 (-)
XLOC_028360 NA non-coding downstream 682267 99991 ~ 101377 (-)
XLOC_028385 NA non-coding upstream 121894 919752 ~ 921761 (-)
XLOC_028389 NA non-coding upstream 213102 1010960 ~ 1013095 (-)
XLOC_028391 NA non-coding upstream 224458 1022316 ~ 1023700 (-)
XLOC_028392 NA non-coding upstream 230978 1028836 ~ 1036046 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000068_00655253_00658127 MAPRE3B, MAPRE3 coding CI01000068 null 654628 ~ 658127 (-)