LOC110535011


Basic Information

Item Value
gene id LOC110535011
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 35720089 ~ 35866083 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110535011
atgggaagcaagtacaggGGCCgccacctggcgtcctacctgggcAAGCCCGACGGGCTGGCCAAGTCATGCGAGCCGGCTGGGCCGGCCGAGGAGCCCGGCGAGGAGCGGGAGCCTGGCGAGCCGGACGAGATTCGGACGGTGATTCTtttgagccagctgaggcatgggagcctggcgAGCCAGCTGTGGCCTCCCCGGATGCTTCGGAACTTCAGCTACATCGCcgctcctctcacctctctcctcaaagTTGGTCCTTACTCTAAGAAACTGTACCCTGCAGAGAGGAATTATGACGTCGGTGATCGAGAGCTCCTGGCGGTGAAGTCGGcattagaggagtggagacactggctggagggcGCCAAGGACCCATTTGCCACCCTCACCGACCACCGGAACCTGGAGTACATACAGACAGCGAGGAAGATGAATCCATGCCAAGCGAGGTGGACCCTTTTCTTCACAAGATTTGACTTCACGCTGACCCAGAGGAACTTCAAGAAGGGAACACTCCATCTGTTGCAGAGTGAGGACCAGATTCTGCTAGTGGCAACTACGGAACGCAATGCGTTCCTCCCTCACTATGACACACTGGTCCAAAGTGGCATGTATGAGTACTATGCTAGCAAGGGCCAGAAGTCTTTACGCGAGTGCCTCAGTACActgttcaaCGAGTCCTTGGGGAAACCAGCAGTGGTTGCCATGGACAACGGCTGTGGAATAACCTCCAAGGAGCTCAATAACTGGGCTGTGTACAGGCTCTCCAAATTCAACAGgaaaaacaacatgttttcaaGctccatgggtattGGAGAgggggtgcgggaggatggaacaaccagaccccgatctggaaATCTGCGATCTCAGAAAACACAGCCCATCTTCTCCGGCTCTGTTGTTCAGTTCCTACGGCGATCAGGAGGGAGATGTCTACGCCACAGGAGGGCGGGTGCAAGTGGTTATGGAACCAAAGGCGCTGTGCGATGAAGTCAAGACTCCTCTCCAAAATTGACAGGGTGGTTACCAATGCAGCCATGAAGAAGAGCATTGATGATGAAATAGCCAAACTCCCAGACAAGCTGAAAGTGACCTGGCCGGAGGGCAACCCCTGGACCCAGAATGATGTCCAGACAGCAGGCACTCCACTAGGGCCTCTCCATGTGGAAATTCTCAACAAGAAAGGAGAGCCGGCATGTAGGATACCATCAGCCACTCAAAACGCAGCACGGAAACACCTAATGGTGATGTGGAGATCAACTTTCACATTGCAGCACATTCAGCCAAagGGCAGTGCAGATAGGTTTGTGGTGGGTATTGTGAACACACCGCTCTATGTGGGGGTGCCTTTTAAAATCCCACTGAAGCTGGTGGATGTCACAGTCACCCTGCTTGTCCTCCTCCCAACCTCAAGCCCTTTCTGGAATGCAGGTAGCCCAGATTCACTCAAAGTGAAACAAGAGAATCCCATCACTGTGGAGAATGGAACCTCTGTTTGCTTTGATGTCCATGACCAAGCAGGAAACGTCACAGTTCAACCCAAACTGATTGTCCACTGCCAGGGGATCTCTGGTTCGTCTTCCATGGTGGCTGTAGACTGCAGTAACACAGGGGCCGGGACCCTGGTGCTCAAACCAGTCGCCCTCAAAAACATCACAGGAGACCAGATGATTAAAGCTACATTTGATATTCCCGTGACCTGGACGGCTGAGGTGAGTGTGGCGGAGCTGGCCCAGGGGAAGCTGCCCAACGTACTGGTGCTGTCGCAGGTGAAGGAAGAGCACTTTTACCAGGTCTCGTACAAAGACCAGCTGGTGTCTGTCGACACCTCCTTCACTATATTGCCCCGCCCTGACAAGCCAAAACACATGAGGGCCACACTGAGCGACACGACCGTGAGGATGGCAGAGTATGTCATAGATGCTGTGCCCAACAATCCTGCCAGACCTTCAGCCACCAACCTCAGTGGTCTCCAACAACATTGTCATTGCCAGTCGTACTCTGATGGAGGACGTGTCTGAAAATAATGGATGTGTATAATAACCCAGTCGGACTGGAGCTGAGATGGAAGGTGGTGGTCACCATCAAGAGCTCCAAGGGCTCCAGTGACAGAAGCCTGCCTCTCTTTGAGGGCAAAGCCTGCAGATTAGCCGTTCTAATGGAGAGGCCCACATCACTTCCTGGTCAGGATGGGAATGAGTACGTCCTGCACTTCAGACCTGTCATCCCAGGGTTTGGCCCCCAAAAATCCCCTAGTAGCGTTTTGAGCTCCCCTTCCGCTTCTACAATGATGTGGAGAACAGGGAGCAGATGTCTGAACTGACCAGGAAGAAGGACCAGATAAACCAGACGATTGACATCTACAAGAGTCTGTTTGACACCAACAGGCAACTCATCACGGAGCTCGATAAGCTGGGATATCTCTATCTTTAGATCAAGTGTTCAACGCCACCAACAAAGAGGGTCATCTGAAATCGGAGCTCATGAAGAATAGCATGAATGTAGCACAACTGTCATCTATTGGCCACCTGGCGCTGGTGGAGGACGATGACGTGGCCACCGTCATCTCCTGGGAGACATGGACTGTGTGGTCACCATGACAACGGTGGCGACACGGAAGATCTACAACGACACCCAGGGGAGGCAGCAGGTCATGCCCCTGGACACGGTGTTCTAGAGAAACAGCAGCagcaaggcacacacacacacacacacacacaagtacctTTAATAAAACAACATGCAATTGTTGCTTCCTTTCAATGTAGAAGTAAATGAAATACCTCTATAATTTGAATCTTTGTGACCTGTGTTGGGAAAGGTTCTTGGAGTTTTGTTCTCAAAGGTGTTCATGCTTTAGTGAGTTGTACTTGTTTCTTTTTTCAGACCCTTGCCCCACATAAGAAATGGCCAGGCCAGATTTCTTCCCATTAGGAACCCTGTGTTTGCCCGAGACCTCCTTATTTTCCAAGAGAATGCAGAGGGCTGCCAGATGGTATTTGGAAACCTATTGGGAGACACCATTTTGATTGATGACCTGGACTCTGCTAACCACTACAGGAAGGGGGTGGTCCAGAGCAGAATCCCGTTCTCCACCCTCGTGACCCGGCAGGGAGAGAGGATCCACAGCATCGGCAAGTTTGGGGGCTTGCAGAACAAAGCCCCACCAATAGAGAAACTGCGTGGCCAGGTGCTTCGGTGCACCCCTCCCCAAGCAATACCAAACCTTTATGGGCCAGATTGACTTGTTCCAGCAGTACCGGTTGGCCATGCAGAAGCGCATACTGGTGAAGGAGGACTTTGAAGGCCACATGCAATACCTGAAGTCACCAGAGATGGCACAGAAAGAGGAGAAGACACAGCTCAAAGACATTGAGACAAAGCTTGTTCAGTTCAGACGCCTCCTGCCATTGGGATGAAATGGAGTCTTGATGATGGCGGAGAATCGTCCGGTATGGTAACCAAGAGAACAAGGCGGAAGTTATTGGGACAGGACTTTTGATCATGCTTATTTGAGCGACATGAATGTCTATTTTCAATTGGATTCGACGTGTACAATAGAGCATTGTACTATACCATCTGTTATATATTATCCTGAAGAGTTAGTCTCCATCCATTTATTTGTTCAGCATTTTTGTTGATTGTTTGTGATTTcattttacatttaaaatgtaagATGGCAGCTGCTGTATATTAAGCCATTTCATTtaactttttctttattttgctcAGTTTACGATTAACTGTATGTTTGGGAGGTATTGGACAATGTCCAAAGACTATTTTGTATCttgaaataaaaatatttaatgaATTATACAAAACAAA

Function

NR:

description
PREDICTED: structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110535011 True 3834 mRNA 0.50 27 35720089 35866083

Neighbor

gene id symbol gene type direction distance location
adcyap1 LOC100135955 coding upstream 118481 35595222 ~ 35601608 (+)
LOC110535619 NA coding upstream 198506 35514475 ~ 35521583 (+)
LOC110535618 LOC106578705 coding upstream 277853 35428021 ~ 35442236 (+)
LOC110535615 LOC106578708 coding upstream 930343 34782869 ~ 34789746 (+)
trnar-ccg-25 NA coding upstream 952096 34767921 ~ 34767993 (+)
LOC110535623 LOC106578698 coding downstream 2182 35868265 ~ 35893791 (+)
LOC110535625 NA coding downstream 77631 35943714 ~ 35950398 (+)
mlrn mlrn coding downstream 140002 36006085 ~ 36011517 (+)
LOC110535012 LOC106590147 coding downstream 146563 36012646 ~ 36019822 (+)
LOC110535013 LOC105015730 coding downstream 199129 36065212 ~ 36075733 (+)
G972137 NA non-coding upstream 589 35719182 ~ 35719500 (+)
G972126 NA non-coding upstream 6325 35713557 ~ 35713764 (+)
G972076 NA non-coding upstream 39980 35679875 ~ 35680109 (+)
G972074 NA non-coding upstream 42226 35677638 ~ 35677863 (+)
G972068 NA non-coding upstream 44430 35675412 ~ 35675659 (+)
G972266 NA non-coding downstream 9393 35875476 ~ 35875676 (+)
G972271 NA non-coding downstream 15000 35881083 ~ 35881349 (+)
G972427 LOC106578695 non-coding downstream 106948 35973031 ~ 35973610 (+)
G972454 NA non-coding downstream 152146 36018229 ~ 36018554 (+)
G970489 LOC106578645 other upstream 1197749 34516457 ~ 34522340 (+)
G970283 NA other upstream 1540041 34179703 ~ 34180048 (+)
G970054 LOC106578636 other upstream 1549102 34163816 ~ 34170987 (+)
G969752 LOC106578632 other upstream 1925028 33794375 ~ 33795061 (+)
G969456 LOC106578609 other upstream 2115279 33604513 ~ 33604810 (+)
G972725 NA other downstream 383890 36249973 ~ 36250586 (+)
LOC110535658 NA other downstream 1676013 37542062 ~ 37543202 (+)
G973918 NA other downstream 1785055 37651138 ~ 37679368 (+)
lztfl1 LOC106590188 other downstream 1965438 37813177 ~ 37835340 (+)
LOC110535015 LOC106578726 other downstream 2154366 37866715 ~ 38045713 (+)

Expression


Co-expression Network