LOC110535623 (LOC106578698)


Basic Information

Item Value
gene id LOC110535623
gene name LOC106578698
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 35868265 ~ 35893791 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021620734.2
CACACTACAGGCACCCTGGAAGTAAGTTTGCATGATCAGCCTTTCGAGCTGCTGCTGGGAGAGGGAACAAACGTCTAACCTCAATGCTTGAAATACATGTTTAATATTTGTTTACTTGTCGTTTATTTTCGTTGTCTAAAAATGAAGTGCCTTCCCACCGGATTCATCCTTAAAAGTGCCTTATTTCCCTTATTGCTCACCTTTCAATTGATCTATGGAACGCGGTCCCGGTATAACCAGGGGTATAACATGTTCCAGGGAAGCGCATACTCTGGCTCAGAACAAAGACAAAGGAATAAAAACTGGTGCGCATACGTTGTGCACAAGAACGTGAGCTGTGCGGTCGTGGGGGGTATGGAGAGCTTTGTGCAGCCGGAGTCAGCGCCTTGCCCGAAGCATCAGCCCAACTGCGCGCAACAAGTGATGTATCGGACCCAATTCCGCCCCATGTACAAGGTTGGCTATaagctggtgacagagctggagtGGAGGTGCTGTCCAGGCCACCAGGGTCAAGACTGCAAAGACTTGAAAGGCATCCCATCCAGTCAGACAGTGCTGGGGCCTCGGCCCACCCTGCCTCCTGCCCCAGAGACACAGGATCCGGGACAGCAGGCATGGGGTCAGAGTGGCCACCCCTGGGGGGCAGGGAGGCAGCCAGGAAGTCAGACAGGCCAAGGTCCGGCGGGGGGCCAGGGAGGGAGTCAGGCGACACAGCAGCTGGAGGAGGTGGTACAGCGTCTGTCCCAGCAGATTCTAGACATGCAGGCAGCCATGACCAGCCTGTCGGCCAACCTGAGGGTGAACCTGCAGGAGGACGCCAGCAAGATGCTGGTCACGATGCTCAACGTCTTGCGGCAGCCAGACAGCGTGCGTGGGGAGCAGCAGAGCATGCTGCTGCAGGGCCTTTCCCTGGAAAAAGAATACAACACGATGGACATTGACAAGTTCACGAGCAAGATCAACCACCTCACCGACACCATAAACACCAAGAGCAATGTACTGGACGACCTCCAAGCCAGAGTCAACCACCATGACGGACAGCTCCACCTGCTAATGGAGGCCAGCCCggcctcaccccctccctctcctccggcCAATGATGCGACCCTGCGCGCCTATGTGGACACAAAGTTCCACGCCCTGAAGGACGAGATGATGGAGGGCATGGAGATCAAGATGGCAGACCTGAAGAACTCATGTGACTATAAGATCCTGTCGGTGCAGGAGCAGTGTGCGGGCCAGGAGAACAGCTACCTGAGCCTGACCGAGCTCCTCGAGTCCAAGGAGATGAACCTCCGCAAGGAGATCCAGGACTTCAAGAACCAGCTGCCTAATTCACAGAGGGGAGACGGAACCCCTCCAGGGGTGGAGGAGCTGCGAAAGGAGCTGTTCCGGGTCGCTGAGGCCCAGCtgatcctccagtccagcctaGAGAAGAAGTCCAAGCCTGACCCACTCCTGCCCCGTGTGGAAGAGCTGGAGGCCCGTCTCAACATGTCGGAGAGGAGCGAGAAGGTGCGCAGCCTCTTCCTGGAGGAGaagctgaggagagagggggcgGAGGGGGCCGCAGACCTGAAGAAGGCTATGGAGGACAGGATGAGCTCCATGGAAGACCGGGTCACCACTATACTGGTGGAGATAAGCAGCCCTGTATCTGGGGTGCAGACTGCGCTAGAGGCACTGCAGAGTACTCAGGCTCTGGAGGACAGACTCAATTCCCTAGAACAGCTGTGCTCCACAGAGTGCAAGTCTGACCAACCGGCCATAGAGCGCATTCAACAGAACCTCCGGGTCTACAGAACTAGCCTAGACACAATTCAGTCTAACATCAATGGGCATTCAGCTAGTCTTGCAGACATGGAAGAGTTTGTCCAAGGGCAGCTCCTGAACCATACCGCCAGTCTTACAGATGTGCAGGAAGAACTAGGAGCTCTTAAAGAACGTATTGGAGGACAGCAGGGTTCTCTGTCAGCCTTGGGTCTCTCTCTTAGCCAGCAGTCCCTGGAGCTACAGGGGCAGCTTCTGAACCACAGTGCCAGCCTTACAGGCGTGGAAGAAGTGCTAGGAGCTCTCAGTGGGCGTATGGGAGTACAGAAGGGCTCTCTGTCAGACTTGGGTATCTCTCTCAGTGATAATCTTAAAGATGTGCAGGAAGAGCTGGGAGCTCTTAGTAGGCGTATGGGAGAGCAGGAGGGTTCTCTGTCGGCCCTGGGTCTCTCTCTCAGCCAGCAGTCCCTGGAGCTCCAGCAACTGAACACCTGTTGCCTGAGCAGTGCAGGACCAGCCCAGGAGGCCAAGGACCTGCTACAACTCCACCTGACccagagagaggagctgagggcCAGGCTGGAGGAGCTGGACAAGGAGGTGAAGGCTGAGGCAGACCACTGCAGGAACAGGACCGAGGGCATAGCTCTGGACGTTGCCAGCATGGACAGCCGGGTTACCAGCTTGGAGAACATGTGTGGTAGGCTGGAACCCATCTCCAGCAGCCTGCACAGGATCAAGGAAGGGCTGAACAAGCATGTGACCGGCTTGTGGAACTGCATCAACCAGATCAATGGCACCTTGCAAGCCCACACCAAGGACATCAGAGGACTGAAGGGAACATACCAGAACCTCCAGGACCACTACTCAGGTGTTCATGTAGGTGTGGAGGAGTCTGGTAATCCCACCGAGACGAAGCTTGTCCCTCAGGGCCCTGTCCTACCCGTTGGGCCAATACCAGATGGGGCCCTACTACATATGATGGAGACTGGGGAGGCAGGAGCCCCCGGAATCACCATCTCTTCCAAACCGCCCAAAGGGGCCGACGGCAGCATGTCCACCCTCAAGGGCTTCGCTGGAGCCCCAGCCTCCCCACCCTCTACAGGGTATTTAAAGCCTAATATGCCAGTGGTTTCTGGTGAGCGGGTGTCCTTCTCGGCTGGTCTCAACCGCTTGCCCTTCCCTGGGGAGGTGGGTATCATCCGCTTCAACAAGGTGTTGGTAAACGATGGGGGACACTATGACCCTTACACAGGCATCTTTCACGTTCCCATGGAGGGCCGCTACCTGCTGAGTGCCGTGCTGACAGCCCAGAGAGGTGCCAAGGTGGAGGCGATGTTCTCTGTGTCCAACCGCAGCATCCAGAGGCTGGACACGGCCGGTTACCTGCCTGATAATGGTGGAGGAGGTGGGGCTGGCTCCACCAGCTGTGACTGCGGAGGCTCTGCCTCCCTGAGCCTGGTTCTCACTCTGATGCGTGGGGACAGGGCAGGTTTAGTCATGACCGCAGGCAAACTTGCCATCTCGGAGAACACAGAGGTCCTCTCAACATTTAGCGCCGTGcttctctaccccaccccctcaaaaAAATAGCTGCCATGTTATAGACAAAGTTAcccccttaaaaaaaaaaaagagaacccCACCAATGATATTGCTTTATGTAGctccaccctcaaaacaacacCCATTCTACTTTAGATGTATGCCTCGTTCACGTGTTAgccggaactaggaaactcaaaTTTGACTTGCTAATTGATTGTAGTTCTACACGTGTCGtgttcaaccagttagcaagaTGGTCATttctgagtttcctagttcccGACAAGCACGTGAACGTGGCAGTAGTATGCCCAACATTGCATGCCTTCCAGGTATTTTAGTATAACAGGTAGATTGCTTTAACGTACTATCATATGACAGAGCTTTCATACAAAAAGAGATCAAATATAAGTATCAAATATTTGATCATAGGATTCTTATGGAGGGGATGGGGCAGGCTACTGCCATTTATGGAGTATTAACATTTAGTGATTGATTATATTTGAAATGTTTGAATGTGTGCTTGTGTTGATGCGTTCAATTTGTTGTAGTTATTTTGAAATGACTATTTTATGAGAACCATCaattataatactgtacatacaggtaactgacaaattAAAAGAAACCAAAGTTTCTTAATAGGGCGTGGGGCCAccacagcttcaatgcgccttggcatagattctacaagtgtctggaactctattggagggacgcgacaccattcttccacgagaaattccatcatttggggTTTTGTTAATGGTGGTGGAAAACTTTCAGGCACCGgcccagaatctcccataagtgttaaattgggttgatctggtgactgagaccacaatggcatatggtttacattgttttcatgcgcatcaaaccattcagtgaccacttgtggatgggggcattgtcgtGGTAGCCCCAAAAAATTGCTAAAATAATGTAGAAAATGCCCAgcattttatacatgaccctacaCATGATGGGATGTtgattgcttaattaactcagtgttccacctgtgtggaagcaccagctttcaatatacttttgtATCCCTCATTCATCAAGCGTTTCCATTGTTTTGGTAGTTACCTGTAGCATCGTTAGAGGAACTAACGTTAAACAAATAAGCTGGTCATTTTTCTACATGACAAGGGATACAGAACTTTTCAACAAGGACAGTTGTTTTGAAAggtattttttgtatttcaacACATTCCAATGAGTCAATGTTCTTTAGGACCAATGCCTGAAAAGGAAATGTTTCAGTACCTTTTCTTGGATCAGAGGACTAGAATTCAGCCCCGGGGGCCAGTAATAAAATATGTGTTTAAACAGTG
>XM_021620733.2
ACACTACAGGCACCCTGGAAGTAAGTTTGCATGATCAGCCTTTCGAGCTGCTGCTGGGAGAGGGAACAAACGTCTAACCTCAATGCTTGAAATACATGTTTAATATTTGTTTACTTGTCGTTTATTTTCGTTGTCTAAAAATGAAGTGCCTTCCCACCGGATTCATCCTTAAAAGTGCCTTATTTCCCTTATTGCTCACCTTTCAATTGATCTATGGAACGCGGTCCCGGTATAACCAGGGGTATAACATGTTCCAGGGAAGCGCATACTCTGGCTCAGAACAAAGACAAAGGAATAAAAACTGGTGCGCATACGTTGTGCACAAGAACGTGAGCTGTGCGGTCGTGGGGGGTATGGAGAGCTTTGTGCAGCCGGAGTCAGCGCCTTGCCCGAAGCATCAGCCCAACTGCGCGCAACAAGTGATGTATCGGACCCAATTCCGCCCCATGTACAAGGTTGGCTATaagctggtgacagagctggagtGGAGGTGCTGTCCAGGCCACCAGGGTCAAGACTGCAAAGACTTGAAAGGCATCCCATCCAGTCAGACAGTGCTGGGGCCTCGGCCCACCCTGCCTCCTGCCCCAGAGACACAGGATCCGGGACAGCAGGCATGGGGTCAGAGTGGCCACCCCTGGGGGGCAGGGAGGCAGCCAGGAAGTCAGACAGGCCAAGGTCCGGCGGGGGGCCAGGGAGGGAGTCAGGCGACACAGCAGCTGGAGGAGGTGGTACAGCGTCTGTCCCAGCAGATTCTAGACATGCAGGCAGCCATGACCAGCCTGTCGGCCAACCTGAGGGTGAACCTGCAGGAGGACGCCAGCAAGATGCTGGTCACGATGCTCAACGTCTTGCGGCAGCCAGACAGCGTGCGTGGGGAGCAGCAGAGCATGCTGCTGCAGGGCCTTTCCCTGGAAAAAGAATACAACACGATGGACATTGACAAGTTCACGAGCAAGATCAACCACCTCACCGACACCATAAACACCAAGAGCAATGTACTGGACGACCTCCAAGCCAGAGTCAACCACCATGACGGACAGCTCCACCTGCTAATGGAGGCCAGCCCggcctcaccccctccctctcctccggcCAATGATGCGACCCTGCGCGCCTATGTGGACACAAAGTTCCACGCCCTGAAGGACGAGATGATGGAGGGCATGGAGATCAAGATGGCAGACCTGAAGAACTCATGTGACTATAAGATCCTGTCGGTGCAGGAGCAGTGTGCGGGCCAGGAGAACAGCTACCTGAGCCTGACCGAGCTCCTCGAGTCCAAGGAGATGAACCTCCGCAAGGAGATCCAGGACTTCAAGAACCAGCTGCCTAATTCACAGAGGGGAGACGGAACCCCTCCAGGGGTGGAGGAGCTGCGAAAGGAGCTGTTCCGGGTCGCTGAGGCCCAGCtgatcctccagtccagcctaGAGAAGAAGTCCAAGCCTGACCCACTCCTGCCCCGTGTGGAAGAGCTGGAGGCCCGTCTCAACATGTCGGAGAGGAGCGAGAAGGTGCGCAGCCTCTTCCTGGAGGAGaagctgaggagagagggggcgGAGGGGGCCGCAGACCTGAAGAAGGCTATGGAGGACAGGATGAGCTCCATGGAAGACCGGGTCACCACTATACTGGTGGAGATAAGCAGCCCTGTATCTGGGGTGCAGACTGCGCTAGAGGCACTGCAGAGTACTCAGGCTCTGGAGGACAGACTCAATTCCCTAGAACAGCTGTGCTCCACAGAGTGCAAGTCTGACCAACCGGCCATAGAGCGCATTCAACAGAACCTCCGGGTCTACAGAACTAGCCTAGACACAATTCAGTCTAACATCAATGGGCATTCAGCTAGTCTTGCAGACATGGAAGAGTTTGTCCAAGGGCAGCTCCTGAACCATACCGCCAGTCTTACAGATGTGCAGGAAGAACTAGGAGCTCTTAAAGAACGTATTGGAGGACAGCAGGGTTCTCTGTCAGCCTTGGGTCTCTCTCTTAGCCAGCAGTCCCTGGAGCTACAGGGGCAGCTTCTGAACCACAGTGCCAGCCTTACAGGCGTGGAAGAAGTGCTAGGAGCTCTCAGTGGGCGTATGGGAGTACAGAAGGGCTCTCTGTCAGACTTGGGTATCTCTCTCAGTGATAATCTTAAAGATGTGCAGGAAGAGCTGGGAGCTCTTAGTAGGCGTATGGGAGAGCAGGAGGGTTCTCTGTCGGCCCTGGGTCTCTCTCTCAGCCAGCAGTCCCTGGAGCTCCAGCAACTGAACACCTGTTGCCTGAGCAGTGCAGGACCAGCCCAGGAGGCCAAGGACCTGCTACAACTCCACCTGACccagagagaggagctgagggcCAGGCTGGAGGAGCTGGACAAGGAGGTGAAGGCTGAGGCAGACCACTGCAGGAACAGGACCGAGGGCATAGCTCTGGACGTTGCCAGCATGGACAGCCGGGTTACCAGCTTGGAGAACATGTGTGGTAGGCTGGAACCCATCTCCAGCAGCCTGCACAGGATCAAGGAAGGGCTGAACAAGCATGTGACCGGCTTGTGGAACTGCATCAACCAGATCAATGGCACCTTGCAAGCCCACACCAAGGACATCAGAGGACTGAAGGGAACATACCAGAACCTCCAGGACCACTACTCAGGTATCACCCAGGCCCTACATCATCTGACCACCAGTCCTGAGAACAGTGGTGTTCATGTAGGTGTGGAGGAGTCTGGTAATCCCACCGAGACGAAGCTTGTCCCTCAGGGCCCTGTCCTACCCGTTGGGCCAATACCAGATGGGGCCCTACTACATATGATGGAGACTGGGGAGGCAGGAGCCCCCGGAATCACCATCTCTTCCAAACCGCCCAAAGGGGCCGACGGCAGCATGTCCACCCTCAAGGGCTTCGCTGGAGCCCCAGCCTCCCCACCCTCTACAGGGTATTTAAAGCCTAATATGCCAGTGGTTTCTGGTGAGCGGGTGTCCTTCTCGGCTGGTCTCAACCGCTTGCCCTTCCCTGGGGAGGTGGGTATCATCCGCTTCAACAAGGTGTTGGTAAACGATGGGGGACACTATGACCCTTACACAGGCATCTTTCACGTTCCCATGGAGGGCCGCTACCTGCTGAGTGCCGTGCTGACAGCCCAGAGAGGTGCCAAGGTGGAGGCGATGTTCTCTGTGTCCAACCGCAGCATCCAGAGGCTGGACACGGCCGGTTACCTGCCTGATAATGGTGGAGGAGGTGGGGCTGGCTCCACCAGCTGTGACTGCGGAGGCTCTGCCTCCCTGAGCCTGGTTCTCACTCTGATGCGTGGGGACAGGGCAGGTTTAGTCATGACCGCAGGCAAACTTGCCATCTCGGAGAACACAGAGGTCCTCTCAACATTTAGCGCCGTGcttctctaccccaccccctcaaaaAAATAGCTGCCATGTTATAGACAAAGTTAcccccttaaaaaaaaaaaagagaacccCACCAATGATATTGCTTTATGTAGctccaccctcaaaacaacacCCATTCTACTTTAGATGTATGCCTCGTTCACGTGTTAgccggaactaggaaactcaaaTTTGACTTGCTAATTGATTGTAGTTCTACACGTGTCGtgttcaaccagttagcaagaTGGTCATttctgagtttcctagttcccGACAAGCACGTGAACGTGGCAGTAGTATGCCCAACATTGCATGCCTTCCAGGTATTTTAGTATAACAGGTAGATTGCTTTAACGTACTATCATATGACAGAGCTTTCATACAAAAAGAGATCAAATATAAGTATCAAATATTTGATCATAGGATTCTTATGGAGGGGATGGGGCAGGCTACTGCCATTTATGGAGTATTAACATTTAGTGATTGATTATATTTGAAATGTTTGAATGTGTGCTTGTGTTGATGCGTTCAATTTGTTGTAGTTATTTTGAAATGACTATTTTATGAGAACCATCaattataatactgtacatacaggtaactgacaaattAAAAGAAACCAAAGTTTCTTAATAGGGCGTGGGGCCAccacagcttcaatgcgccttggcatagattctacaagtgtctggaactctattggagggacgcgacaccattcttccacgagaaattccatcatttggggTTTTGTTAATGGTGGTGGAAAACTTTCAGGCACCGgcccagaatctcccataagtgttaaattgggttgatctggtgactgagaccacaatggcatatggtttacattgttttcatgcgcatcaaaccattcagtgaccacttgtggatgggggcattgtcgtGGTAGCCCCAAAAAATTGCTAAAATAATGTAGAAAATGCCCAgcattttatacatgaccctacaCATGATGGGATGTtgattgcttaattaactcagtgttccacctgtgtggaagcaccagctttcaatatacttttgtATCCCTCATTCATCAAGCGTTTCCATTGTTTTGGTAGTTACCTGTAGCATCGTTAGAGGAACTAACGTTAAACAAATAAGCTGGTCATTTTTCTACATGACAAGGGATACAGAACTTTTCAACAAGGACAGTTGTTTTGAAAggtattttttgtatttcaacACATTCCAATGAGTCAATGTTCTTTAGGACCAATGCCTGAAAAGGAAATGTTTCAGTACCTTTTCTTGGATCAGAGGACTAGAATTCAGCCCCGGGGGCCAGTAATAAAATATGTGTTTAAACAGTG
>TU1107448
gacgcgacaccattcttccacgagaaattccatcatttggggTTTTGTTAATGGTGGTGGAAAACTTTCAGGCACCGgcccagaatctcccataagtgttaaattgggttgatctggtgactgagaccacaatggcatatggtttacattgttttcatgcgcatcaaaccattcagtgaccacttgtggatgggggcattgtcgtGGTAGCCCCAAAAAATTGCTAAAATAATGTAGAAAATGCCCAgcattttatacatgaccctacaCATGATGGGATGTtgattgcttaattaactcagtgttccacctgtgtggaagcaccagctttcaatatacttttgtATCCCTCATTCATCAAGCGTTTCCATTGTTTTGGTAGTTACCTGTAGCATCGTTAGAGGAACTAACGTTAAACAAATAAGCTGGTCATTTTTCTACATGACAAGGGATACAGAACTTTTCAACAAGGACAGTTGTTTTGAAAggtattttttgtatttcaacACATTCCAATGAGTCAATGTTCTTTAGGACCAATGCCTGAAAAGGAAATGTTTCAGTACCTTTTCTTGGATCAGAGGACTAGAATTCAGCCCCGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021620734.2 False 4670 mRNA 0.52 8 35868265 35893791
XM_021620733.2 False 4717 mRNA 0.52 8 35868266 35893791
TU1107448 True 602 lncRNA 0.41 1 35893158 35893759

Neighbor

gene id symbol gene type direction distance location
LOC110535011 NA coding upstream 2182 35720089 ~ 35866083 (+)
adcyap1 LOC100135955 coding upstream 266657 35595222 ~ 35601608 (+)
LOC110535619 NA coding upstream 346682 35514475 ~ 35521583 (+)
LOC110535618 LOC106578705 coding upstream 426029 35428021 ~ 35442236 (+)
LOC110535615 LOC106578708 coding upstream 1078519 34782869 ~ 34789746 (+)
LOC110535625 NA coding downstream 49923 35943714 ~ 35950398 (+)
mlrn mlrn coding downstream 112294 36006085 ~ 36011517 (+)
LOC110535012 LOC106590147 coding downstream 118855 36012646 ~ 36019822 (+)
LOC110535013 LOC105015730 coding downstream 171421 36065212 ~ 36075733 (+)
LOC110535630 LOC106578722 coding downstream 257289 36151080 ~ 36157644 (+)
G972252 NA non-coding upstream 13559 35854401 ~ 35854706 (+)
G972192 NA non-coding upstream 105758 35762261 ~ 35762507 (+)
G972158 NA non-coding upstream 133726 35734309 ~ 35734539 (+)
G972154 NA non-coding upstream 136131 35731921 ~ 35732134 (+)
G972137 NA non-coding upstream 148765 35719182 ~ 35719500 (+)
G972427 LOC106578695 non-coding downstream 79240 35973031 ~ 35973610 (+)
G972454 NA non-coding downstream 124438 36018229 ~ 36018554 (+)
G972455 LOC108238713 non-coding downstream 132609 36026400 ~ 36026768 (+)
G972458 NA non-coding downstream 136173 36029964 ~ 36030298 (+)
G972460 NA non-coding downstream 138359 36032150 ~ 36032396 (+)
G970489 LOC106578645 other upstream 1345925 34516457 ~ 34522340 (+)
G970283 NA other upstream 1688217 34179703 ~ 34180048 (+)
G970054 LOC106578636 other upstream 1697278 34163816 ~ 34170987 (+)
G969752 LOC106578632 other upstream 2073204 33794375 ~ 33795061 (+)
G969456 LOC106578609 other upstream 2263455 33604513 ~ 33604810 (+)
G972725 NA other downstream 356182 36249973 ~ 36250586 (+)
LOC110535658 NA other downstream 1648305 37542062 ~ 37543202 (+)
G973918 NA other downstream 1757347 37651138 ~ 37679368 (+)
lztfl1 LOC106590188 other downstream 1937730 37813177 ~ 37835340 (+)
LOC110535015 LOC106578726 other downstream 2126658 37866715 ~ 38045713 (+)
G972271 NA non-coding upstream 11809 35881083 ~ 35881349 (+)
G972266 NA non-coding upstream 17482 35875476 ~ 35875676 (+)

Expression


Co-expression Network